Domain in histone families 1 and 5
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Linker_histone | PF00538 | 76 - 137 | 2.3e-10 | linker histone H1 and H5 family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 666, 3954 |
| AbsI | CCTCGAGG | 1 cut(s) | 3393 |
| Acc16I | TGCGCA | 1 cut(s) | 1203 |
| AccB1I | GGYRCC | 1 cut(s) | 3436 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2297 |
| AccI | GTMKAC | 1 cut(s) | 196 |
| AclI | AACGTT | 1 cut(s) | 2112 |
| AcoI | YGGCCR | 2 cut(s) | 6, 4366 |
| AcsI | RAATTY | 8 cut(s) | 308, 807, 841, 1146, 2063, 2563, 2612, 2637 |
| AcuI | CTGAAG | 8 cut(s) | 312, 2192, 2718, 2906, 3665, 3801, 3999, 4788 |
| AcyI | GRCGYC | 1 cut(s) | 3047 |
| AdeI | CACNNNGTG | 1 cut(s) | 1759 |
| AfaI | GTAC | 5 cut(s) | 999, 1104, 1811, 2493, 3294 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 2297, 3830, 4576 |
| AflII | CTTAAG | 1 cut(s) | 4460 |
| AflIII | ACRYGT | 3 cut(s) | 1240, 1342, 1511 |
| AjnI | CCWGG | 6 cut(s) | 1048, 2885, 3193, 3772, 3823, 4642 |
| Alw21I | GWGCWC | 1 cut(s) | 3893 |
| Alw26I | GTCTC | 8 cut(s) | 66, 783, 2792, 3567, 3813, 3940, 3962, 4662 |
| Alw44I | GTGCAC | 1 cut(s) | 3889 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 2128, 3779, 4219, 4222, 4336, 4339 |
| Ama87I | CYCGRG | 2 cut(s) | 3393, 3636 |
| AoxI | GGCC | 9 cut(s) | 6, 2500, 2701, 3288, 3821, 4225, 4366, 4517, 4565 |
| ApaLI | GTGCAC | 1 cut(s) | 3889 |
| ApoI | RAATTY | 8 cut(s) | 308, 807, 841, 1146, 2063, 2563, 2612, 2637 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 933, 1902, 2967, 3984 |
| AspLEI | GCGC | 4 cut(s) | 1204, 3457, 3528, 4344 |
| AspS9I | GGNCC | 9 cut(s) | 1913, 2300, 2500, 2621, 3256, 3998, 4225, 4517, 4566 |
| AsuC2I | CCSGG | 1 cut(s) | 34 |
| AsuHPI | GGTGA | 7 cut(s) | 218, 455, 1393, 1621, 3052, 3296, 3582 |
| AsuII | TTCGAA | 3 cut(s) | 2260, 3697, 4756 |
| AsuNHI | GCTAGC | 1 cut(s) | 2410 |
| AvaI | CYCGRG | 2 cut(s) | 3393, 3636 |
| AvaII | GGWCC | 5 cut(s) | 1913, 2300, 2621, 3256, 3998 |
| AxyI | CCTNAGG | 1 cut(s) | 2496 |
| BaeGI | GKGCMC | 1 cut(s) | 3893 |
| BamHI | GGATCC | 2 cut(s) | 2390, 4126 |
| BanI | GGYRCC | 1 cut(s) | 3436 |
| BanII | GRGCYC | 3 cut(s) | 3903, 4805, 4852 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 981, 1013, 1086, 1118 |
| BauI | CACGAG | 1 cut(s) | 2835 |
| BbsI | GAAGAC | 6 cut(s) | 356, 491, 2761, 3050, 3182, 3653 |
| Bbv12I | GWGCWC | 1 cut(s) | 3893 |
| BccI | CCATC | 7 cut(s) | 112, 1130, 2712, 3214, 3267, 3847, 4464 |
| BceAI | ACGGC | 4 cut(s) | 224, 3275, 3450, 4329 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1618, 1652, 3870, 3904 |
| BciT130I | CCWGG | 6 cut(s) | 1050, 2887, 3195, 3774, 3825, 4644 |
| BciVI | GTATCC | 2 cut(s) | 2893, 3601 |
| BclI | TGATCA | 3 cut(s) | 757, 3496, 4668 |
| BcnI | CCSGG | 1 cut(s) | 34 |
| BcoDI | GTCTC | 8 cut(s) | 66, 783, 2792, 3567, 3813, 3940, 3962, 4662 |
| BfaI | CTAG | 7 cut(s) | 456, 1584, 2411, 2747, 3185, 3995, 4139 |
| BfmI | CTRYAG | 5 cut(s) | 1194, 1473, 3680, 4538, 4682 |
| BfrI | CTTAAG | 1 cut(s) | 4460 |
| BfuI | GTATCC | 2 cut(s) | 2893, 3601 |
| BglII | AGATCT | 1 cut(s) | 2364 |
| Bme1390I | CCNGG | 7 cut(s) | 34, 1050, 2887, 3195, 3774, 3825, 4644 |
| Bme18I | GGWCC | 5 cut(s) | 1913, 2300, 2621, 3256, 3998 |
| BmeT110I | CYCGRG | 2 cut(s) | 3393, 3636 |
| BmgT120I | GGNCC | 9 cut(s) | 1913, 2300, 2500, 2621, 3256, 3998, 4225, 4517, 4566 |
| BmiI | GGNNCC | 5 cut(s) | 2392, 3438, 4128, 4568, 4870 |
| BmrFI | CCNGG | 7 cut(s) | 34, 1050, 2887, 3195, 3774, 3825, 4644 |
| BmsI | GCATC | 8 cut(s) | 766, 1189, 2008, 2423, 2521, 3022, 3245, 4123 |
| BmtI | GCTAGC | 1 cut(s) | 2414 |
| BpiI | GAAGAC | 6 cut(s) | 356, 491, 2761, 3050, 3182, 3653 |
| BpmI | CTGGAG | 9 cut(s) | 627, 966, 1071, 1641, 2322, 2816, 3374, 3846, 3879 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2946, 3159 |
| Bpu14I | TTCGAA | 3 cut(s) | 2260, 3697, 4756 |
| BpuEI | CTTGAG | 4 cut(s) | 379, 3283, 3795, 4704 |
| BpuMI | CCSGG | 1 cut(s) | 34 |
| BsaAI | YACGTR | 2 cut(s) | 251, 1514 |
| BsaBI | GATNNNNATC | 1 cut(s) | 25 |
| BsaHI | GRCGYC | 1 cut(s) | 3047 |
| BsaI | GGTCTC | 3 cut(s) | 66, 2792, 3962 |
| BsaJI | CCNNGG | 4 cut(s) | 33, 2430, 2476, 4643 |
| BsaWI | WCCGGW | 1 cut(s) | 160 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 384, 414, 625, 655, 1878, 1908, 1982, 2012 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 2297, 3830, 4576 |
| Bse1I | ACTGG | 8 cut(s) | 9, 206, 640, 3073, 3357, 3754, 3928, 4509 |
| Bse21I | CCTNAGG | 1 cut(s) | 2496 |
| Bse3DI | GCAATG | 1 cut(s) | 4259 |
| Bse8I | GATNNNNATC | 1 cut(s) | 25 |
| BseBI | CCWGG | 6 cut(s) | 1050, 2887, 3195, 3774, 3825, 4644 |
| BseDI | CCNNGG | 4 cut(s) | 33, 2430, 2476, 4643 |
| BseGI | GGATG | 3 cut(s) | 2704, 3256, 4585 |
| BseJI | GATNNNNATC | 1 cut(s) | 25 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 2297, 3830, 4576 |
| BseMI | GCAATG | 1 cut(s) | 4259 |
| BseNI | ACTGG | 8 cut(s) | 9, 206, 640, 3073, 3357, 3754, 3928, 4509 |
| BseRI | GAGGAG | 2 cut(s) | 75, 278 |
| BseSI | GKGCMC | 1 cut(s) | 3893 |
| BseYI | CCCAGC | 5 cut(s) | 2394, 2802, 4110, 4222, 4514 |
| BsgI | GTGCAG | 6 cut(s) | 1377, 1533, 2141, 2171, 2213, 4223 |
| BshFI | GGCC | 9 cut(s) | 8, 2502, 2703, 3290, 3823, 4227, 4368, 4519, 4567 |
| BshNI | GGYRCC | 1 cut(s) | 3436 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3893 |
| BsiHKCI | CYCGRG | 2 cut(s) | 3393, 3636 |
| BsiSI | CCGG | 3 cut(s) | 33, 161, 3538 |
| BslFI | GGGAC | 5 cut(s) | 455, 851, 2735, 4188, 4305 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 2297, 3830, 4576 |
| BsmAI | GTCTC | 8 cut(s) | 66, 783, 2792, 3567, 3813, 3940, 3962, 4662 |
| BsmBI | CGTCTC | 2 cut(s) | 783, 3940 |
| BsmFI | GGGAC | 5 cut(s) | 455, 851, 2735, 4188, 4305 |
| BsmI | GAATGC | 1 cut(s) | 3730 |
| BsnI | GGCC | 9 cut(s) | 8, 2502, 2703, 3290, 3823, 4227, 4368, 4519, 4567 |
| Bso31I | GGTCTC | 3 cut(s) | 66, 2792, 3962 |
| BsoBI | CYCGRG | 2 cut(s) | 3393, 3636 |
| Bsp119I | TTCGAA | 3 cut(s) | 2260, 3697, 4756 |
| Bsp1286I | GDGCHC | 4 cut(s) | 3893, 3903, 4805, 4852 |
| Bsp1407I | TGTACA | 1 cut(s) | 997 |
| Bsp19I | CCATGG | 1 cut(s) | 2430 |
| BspANI | GGCC | 9 cut(s) | 8, 2502, 2703, 3290, 3823, 4227, 4368, 4519, 4567 |
| BspHI | TCATGA | 2 cut(s) | 2662, 3004 |
| BspLI | GGNNCC | 5 cut(s) | 2392, 3438, 4128, 4568, 4870 |
| BspMAI | CTGCAG | 2 cut(s) | 1477, 3684 |
| BspOI | GCTAGC | 1 cut(s) | 2414 |
| BspQI | GCTCTTC | 2 cut(s) | 1302, 1587 |
| BspT104I | TTCGAA | 3 cut(s) | 2260, 3697, 4756 |
| BspT107I | GGYRCC | 1 cut(s) | 3436 |
| BspTI | CTTAAG | 1 cut(s) | 4460 |
| BspTNI | GGTCTC | 3 cut(s) | 66, 2792, 3962 |
| BsrDI | GCAATG | 1 cut(s) | 4259 |
| BsrGI | TGTACA | 1 cut(s) | 997 |
| BsrI | ACTGG | 8 cut(s) | 9, 206, 640, 3073, 3357, 3754, 3928, 4509 |
| BssECI | CCNNGG | 4 cut(s) | 33, 2430, 2476, 4643 |
| BssNI | GRCGYC | 1 cut(s) | 3047 |
| BssSI | CACGAG | 1 cut(s) | 2835 |
| BssT1I | CCWWGG | 2 cut(s) | 2430, 2476 |
| Bst2BI | CACGAG | 1 cut(s) | 2835 |
| Bst2UI | CCWGG | 6 cut(s) | 1050, 2887, 3195, 3774, 3825, 4644 |
| Bst6I | CTCTTC | 4 cut(s) | 52, 1302, 1587, 2595 |
| BstACI | GRCGYC | 1 cut(s) | 3047 |
| BstAFI | CTTAAG | 1 cut(s) | 4460 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 2128, 3071, 4339 |
| BstAUI | TGTACA | 1 cut(s) | 997 |
| BstBAI | YACGTR | 2 cut(s) | 251, 1514 |
| BstBI | TTCGAA | 3 cut(s) | 2260, 3697, 4756 |
| BstC8I | GCNNGC | 4 cut(s) | 105, 129, 2412, 3453 |
| BstDSI | CCRYGG | 1 cut(s) | 2430 |
| BstF5I | GGATG | 3 cut(s) | 2704, 3256, 4585 |
| BstHHI | GCGC | 4 cut(s) | 1204, 3457, 3528, 4344 |
| BstMAI | GTCTC | 8 cut(s) | 66, 783, 2792, 3567, 3813, 3940, 3962, 4662 |
| BstNI | CCWGG | 6 cut(s) | 1050, 2887, 3195, 3774, 3825, 4644 |
| BstNSI | RCATGY | 2 cut(s) | 1244, 1346 |
| BstSCI | CCNGG | 7 cut(s) | 32, 1048, 2885, 3193, 3772, 3823, 4642 |
| BstSFI | CTRYAG | 5 cut(s) | 1194, 1473, 3680, 4538, 4682 |
| BstSLI | GKGCMC | 1 cut(s) | 3893 |
| BstSNI | TACGTA | 1 cut(s) | 251 |
| BstV2I | GAAGAC | 6 cut(s) | 356, 491, 2761, 3050, 3182, 3653 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2496 |
| BsuI | GTATCC | 2 cut(s) | 2893, 3601 |
| BsuRI | GGCC | 9 cut(s) | 8, 2502, 2703, 3290, 3823, 4227, 4368, 4519, 4567 |
| BtgI | CCRYGG | 1 cut(s) | 2430 |
| BtgZI | GCGATG | 1 cut(s) | 3720 |
| BtsCI | GGATG | 3 cut(s) | 2704, 3256, 4585 |
| BtsI | GCAGTG | 3 cut(s) | 1482, 4083, 4176 |
| Cac8I | GCNNGC | 4 cut(s) | 105, 129, 2412, 3453 |
| CaiI | CAGNNNCTG | 6 cut(s) | 2128, 3779, 4219, 4222, 4336, 4339 |
| CciI | TCATGA | 2 cut(s) | 2662, 3004 |
| CfoI | GCGC | 4 cut(s) | 1204, 3457, 3528, 4344 |
| Cfr13I | GGNCC | 9 cut(s) | 1913, 2300, 2500, 2621, 3256, 3998, 4225, 4517, 4566 |
| CseI | GACGC | 4 cut(s) | 2444, 3055, 4365, 4517 |
| Csp6I | GTAC | 5 cut(s) | 998, 1103, 1810, 2492, 3293 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4059, 4094 |
| CviQI | GTAC | 5 cut(s) | 998, 1103, 1810, 2492, 3293 |
| DraI | TTTAAA | 1 cut(s) | 2454 |
| DraIII | CACNNNGTG | 1 cut(s) | 1759 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 666, 3954 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 666, 3954 |
| EaeI | YGGCCR | 2 cut(s) | 6, 4366 |
| Eam1104I | CTCTTC | 4 cut(s) | 52, 1302, 1587, 2595 |
| EarI | CTCTTC | 4 cut(s) | 52, 1302, 1587, 2595 |
| Eco105I | TACGTA | 1 cut(s) | 251 |
| Eco130I | CCWWGG | 2 cut(s) | 2430, 2476 |
| Eco147I | AGGCCT | 1 cut(s) | 3823 |
| Eco24I | GRGCYC | 3 cut(s) | 3903, 4805, 4852 |
| Eco31I | GGTCTC | 3 cut(s) | 66, 2792, 3962 |
| Eco32I | GATATC | 1 cut(s) | 178 |
| Eco47I | GGWCC | 5 cut(s) | 1913, 2300, 2621, 3256, 3998 |
| Eco57I | CTGAAG | 8 cut(s) | 312, 2192, 2718, 2906, 3665, 3801, 3999, 4788 |
| Eco81I | CCTNAGG | 1 cut(s) | 2496 |
| Eco88I | CYCGRG | 2 cut(s) | 3393, 3636 |
| EcoO109I | RGGNCCY | 1 cut(s) | 4566 |
| EcoRI | GAATTC | 1 cut(s) | 2637 |
| EcoRII | CCWGG | 6 cut(s) | 1048, 2885, 3193, 3772, 3823, 4642 |
| EcoRV | GATATC | 1 cut(s) | 178 |
| EcoT14I | CCWWGG | 2 cut(s) | 2430, 2476 |
| EcoT38I | GRGCYC | 3 cut(s) | 3903, 4805, 4852 |
| ErhI | CCWWGG | 2 cut(s) | 2430, 2476 |
| Esp3I | CGTCTC | 2 cut(s) | 783, 3940 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2952, 2984, 3012, 3044 |
| FaqI | GGGAC | 5 cut(s) | 455, 851, 2735, 4188, 4305 |
| FauI | CCCGC | 1 cut(s) | 2571 |
| FauNDI | CATATG | 1 cut(s) | 4230 |
| FbaI | TGATCA | 3 cut(s) | 757, 3496, 4668 |
| FblI | GTMKAC | 1 cut(s) | 196 |
| FokI | GGATG | 3 cut(s) | 2691, 3263, 4592 |
| FriOI | GRGCYC | 3 cut(s) | 3903, 4805, 4852 |
| FspBI | CTAG | 7 cut(s) | 456, 1584, 2411, 2747, 3185, 3995, 4139 |
| FspI | TGCGCA | 1 cut(s) | 1203 |
| GlaI | GCGC | 4 cut(s) | 1203, 3456, 3527, 4343 |
| GsaI | CCCAGC | 5 cut(s) | 2398, 2806, 4114, 4226, 4518 |
| GsuI | CTGGAG | 9 cut(s) | 627, 966, 1071, 1641, 2322, 2816, 3374, 3846, 3879 |
| HaeIII | GGCC | 9 cut(s) | 8, 2502, 2703, 3290, 3823, 4227, 4368, 4519, 4567 |
| HapII | CCGG | 3 cut(s) | 33, 161, 3538 |
| HgaI | GACGC | 4 cut(s) | 2444, 3055, 4365, 4517 |
| HhaI | GCGC | 4 cut(s) | 1204, 3457, 3528, 4344 |
| Hin1I | GRCGYC | 1 cut(s) | 3047 |
| Hin6I | GCGC | 4 cut(s) | 1202, 3455, 3526, 4342 |
| HinP1I | GCGC | 4 cut(s) | 1202, 3455, 3526, 4342 |
| HincII | GTYRAC | 3 cut(s) | 288, 625, 4046 |
| HindII | GTYRAC | 3 cut(s) | 288, 625, 4046 |
| HindIII | AAGCTT | 2 cut(s) | 101, 3491 |
| HpaII | CCGG | 3 cut(s) | 33, 161, 3538 |
| HphI | GGTGA | 7 cut(s) | 218, 455, 1393, 1621, 3052, 3296, 3582 |
| Hpy166II | GTNNAC | 7 cut(s) | 197, 288, 625, 3200, 3295, 3891, 4046 |
| Hpy8I | GTNNAC | 7 cut(s) | 197, 288, 625, 3200, 3295, 3891, 4046 |
| Hpy99I | CGWCG | 1 cut(s) | 4381 |
| HpyCH4IV | ACGT | 5 cut(s) | 250, 792, 1513, 2112, 3388 |
| HpySE526I | ACGT | 5 cut(s) | 250, 792, 1513, 2112, 3388 |
| Hsp92I | GRCGYC | 1 cut(s) | 3047 |
| HspAI | GCGC | 4 cut(s) | 1202, 3455, 3526, 4342 |
| Ksp22I | TGATCA | 3 cut(s) | 757, 3496, 4668 |
| LguI | GCTCTTC | 2 cut(s) | 1302, 1587 |
| LmnI | GCTCC | 5 cut(s) | 3076, 3227, 3364, 3776, 4021 |
| LweI | GCATC | 8 cut(s) | 766, 1189, 2008, 2423, 2521, 3022, 3245, 4123 |
| MaeI | CTAG | 7 cut(s) | 456, 1584, 2411, 2747, 3185, 3995, 4139 |
| MaeII | ACGT | 5 cut(s) | 250, 792, 1513, 2112, 3388 |
| MfeI | CAATTG | 7 cut(s) | 258, 696, 1700, 1826, 3521, 4178, 4295 |
| MhlI | GDGCHC | 4 cut(s) | 3893, 3903, 4805, 4852 |
| MmeI | TCCRAC | 3 cut(s) | 455, 3811, 4557 |
| MroXI | GAANNNNTTC | 4 cut(s) | 933, 1902, 2967, 3984 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1379, 2147, 2189, 3752, 4431 |
| MspA1I | CMGCKG | 5 cut(s) | 2398, 3410, 3679, 4219, 4336 |
| MspCI | CTTAAG | 1 cut(s) | 4460 |
| MspI | CCGG | 3 cut(s) | 33, 161, 3538 |
| MspR9I | CCNGG | 7 cut(s) | 34, 1050, 2887, 3195, 3774, 3825, 4644 |
| MunI | CAATTG | 7 cut(s) | 258, 696, 1700, 1826, 3521, 4178, 4295 |
| Mva1269I | GAATGC | 1 cut(s) | 3730 |
| MvaI | CCWGG | 6 cut(s) | 1050, 2887, 3195, 3774, 3825, 4644 |
| NciI | CCSGG | 1 cut(s) | 34 |
| NcoI | CCATGG | 1 cut(s) | 2430 |
| NdeI | CATATG | 1 cut(s) | 4230 |
| NheI | GCTAGC | 1 cut(s) | 2410 |
| NlaIV | GGNNCC | 5 cut(s) | 2392, 3438, 4128, 4568, 4870 |
| NmuCI | GTSAC | 9 cut(s) | 562, 889, 1543, 3134, 3302, 3756, 3934, 4714, 4858 |
| NsbI | TGCGCA | 1 cut(s) | 1203 |
| NspI | RCATGY | 2 cut(s) | 1244, 1346 |
| NspV | TTCGAA | 3 cut(s) | 2260, 3697, 4756 |
| PaeR7I | CTCGAG | 2 cut(s) | 3393, 3636 |
| PagI | TCATGA | 2 cut(s) | 2662, 3004 |
| PceI | AGGCCT | 1 cut(s) | 3823 |
| PciI | ACATGT | 2 cut(s) | 1240, 1342 |
| PciSI | GCTCTTC | 2 cut(s) | 1302, 1587 |
| PctI | GAATGC | 1 cut(s) | 3730 |
| PdmI | GAANNNNTTC | 4 cut(s) | 933, 1902, 2967, 3984 |
| PfeI | GAWTC | 9 cut(s) | 446, 767, 934, 2903, 3212, 3722, 3766, 3785, 4033 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2297 |
| PfoI | TCCNGGA | 1 cut(s) | 2885 |
| Ppu21I | YACGTR | 2 cut(s) | 251, 1514 |
| PscI | ACATGT | 2 cut(s) | 1240, 1342 |
| Psp1406I | AACGTT | 1 cut(s) | 2112 |
| Psp6I | CCWGG | 6 cut(s) | 1048, 2885, 3193, 3772, 3823, 4642 |
| PspFI | CCCAGC | 5 cut(s) | 2394, 2802, 4110, 4222, 4514 |
| PspGI | CCWGG | 6 cut(s) | 1048, 2885, 3193, 3772, 3823, 4642 |
| PspN4I | GGNNCC | 5 cut(s) | 2392, 3438, 4128, 4568, 4870 |
| PspPI | GGNCC | 9 cut(s) | 1913, 2300, 2500, 2621, 3256, 3998, 4225, 4517, 4566 |
| PspXI | VCTCGAGB | 1 cut(s) | 3393 |
| PstI | CTGCAG | 2 cut(s) | 1477, 3684 |
| PstNI | CAGNNNCTG | 6 cut(s) | 2128, 3779, 4219, 4222, 4336, 4339 |
| PvuII | CAGCTG | 5 cut(s) | 2398, 3410, 3679, 4219, 4336 |
| RsaI | GTAC | 5 cut(s) | 999, 1104, 1811, 2493, 3294 |
| RsaNI | GTAC | 5 cut(s) | 998, 1103, 1810, 2492, 3293 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1379, 2147, 2189, 3752, 4431 |
| SapI | GCTCTTC | 2 cut(s) | 1302, 1587 |
| Sau96I | GGNCC | 9 cut(s) | 1913, 2300, 2500, 2621, 3256, 3998, 4225, 4517, 4566 |
| ScrFI | CCNGG | 7 cut(s) | 34, 1050, 2887, 3195, 3774, 3825, 4644 |
| SduI | GDGCHC | 4 cut(s) | 3893, 3903, 4805, 4852 |
| SfaNI | GCATC | 8 cut(s) | 766, 1189, 2008, 2423, 2521, 3022, 3245, 4123 |
| SfcI | CTRYAG | 5 cut(s) | 1194, 1473, 3680, 4538, 4682 |
| Sfr274I | CTCGAG | 2 cut(s) | 3393, 3636 |
| SfuI | TTCGAA | 3 cut(s) | 2260, 3697, 4756 |
| SinI | GGWCC | 5 cut(s) | 1913, 2300, 2621, 3256, 3998 |
| SlaI | CTCGAG | 2 cut(s) | 3393, 3636 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1379, 2147, 2189, 3752, 4431 |
| SmlI | CTYRAG | 7 cut(s) | 358, 3298, 3393, 3636, 3810, 4460, 4719 |
| SmoI | CTYRAG | 7 cut(s) | 358, 3298, 3393, 3636, 3810, 4460, 4719 |
| SnaBI | TACGTA | 1 cut(s) | 251 |
| SseBI | AGGCCT | 1 cut(s) | 3823 |
| SspMI | CTAG | 7 cut(s) | 456, 1584, 2411, 2747, 3185, 3995, 4139 |
| StuI | AGGCCT | 1 cut(s) | 3823 |
| StyD4I | CCNGG | 7 cut(s) | 32, 1048, 2885, 3193, 3772, 3823, 4642 |
| StyI | CCWWGG | 2 cut(s) | 2430, 2476 |
| TaiI | ACGT | 5 cut(s) | 253, 795, 1516, 2115, 3391 |
| TaqII | GACCGA | 1 cut(s) | 1896 |
| TatI | WGTACW | 2 cut(s) | 997, 1102 |
| TauI | GCSGC | 6 cut(s) | 8, 17, 2024, 4204, 4207, 4368 |
| TfiI | GAWTC | 9 cut(s) | 446, 767, 934, 2903, 3212, 3722, 3766, 3785, 4033 |
| TseFI | GTSAC | 9 cut(s) | 562, 889, 1543, 3134, 3302, 3756, 3934, 4714, 4858 |
| Tsp45I | GTSAC | 9 cut(s) | 562, 889, 1543, 3134, 3302, 3756, 3934, 4714, 4858 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2297 |
| Vha464I | CTTAAG | 1 cut(s) | 4460 |
| VneI | GTGCAC | 1 cut(s) | 3889 |
| VpaK11BI | GGWCC | 5 cut(s) | 1913, 2300, 2621, 3256, 3998 |
| XapI | RAATTY | 8 cut(s) | 308, 807, 841, 1146, 2063, 2563, 2612, 2637 |
| XbaI | TCTAGA | 1 cut(s) | 455 |
| XceI | RCATGY | 2 cut(s) | 1244, 1346 |
| XhoI | CTCGAG | 2 cut(s) | 3393, 3636 |
| XmiI | GTMKAC | 1 cut(s) | 196 |
| XmnI | GAANNNNTTC | 4 cut(s) | 933, 1902, 2967, 3984 |
| XspI | CTAG | 7 cut(s) | 456, 1584, 2411, 2747, 3185, 3995, 4139 |