Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000827

Physical Location & Seq

Genomic Coordinates Forward (+)

19268925 .. 19269683

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG223300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGATAAGTTATCTCAACCGGTGGTGCAAAATACAGATCATCATGGTCAACAAAAGATGTTGAAATCCAAGCCAACAACAATGGCAGAAAGTCCACAGCTCAAGTCAGCATCAGTGGAAGATCTTCCTCAAACAGCAAAAGGGCTGCAACAGAAGAAGCTGTGCCATATGAACTTGCGTTCACGCAGCCAAGCTGCATCACAACCTGAGCTTGTTGTATCAATGGCAAAATCATTGCCCTCAGAACACCATTATGAGCAGCCACAAGAAATGAAGCATCAAGGCCTACGCAGGCCTAAGTTGAATTCACACAATCAGCATAATGGTGAACTTCAGCCCCCAAAGCATCTTGAGCAGCCACAGAAACCAAGTGGCAGGCCTCCTAAACGAAAACTGGATGTGGCTGCAAATGAAGATGTATCATTGCCTGCTAAGTATCAGAAGCTGCAGGATGAACCAGAAAATCAAAGACAAGAGAGGCCTCCTAAGTTGAAAAGAAATATGGTTTTGGGTCTTTTTGCCGCATCAAAATATGAACCTGCTCTGTCGATGACAGAATCACTGTTCTTAAAGGTGAATCCAGATATTGAGCATCATGATGAGCTGCAGCCCCAGAAGCATCCTGAGCAACCACAAAAACGAAGGGGCAGGCCTCGAAAGTTGAATCCAGATAATGAGCTTGTGAAGGACTGCCACACCCAAAGCAACCTGAGCAGCCACAAAATCCAAAAAGACAACGAGGGAGGCCCTGTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

252

Amino Acids

28.72

Weight (kDa)

9.52

Isoelectric Point (pI)

73.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08780
fragaria_vesca	FvH4_5g27971
malus_domestica	MD06G1045800.v1.1
prunus_persica	Prupe.5G053600_v2.0.a1 Prupe.5G053600_v2.0.a1
pyrus_communis	pycom06g03880
rosa_chinensis	RchiOBHm_Chr7g0206261 RchiOBHm_Chr7g0206321 RchiOBHm_Chr7g0206331
rosa_laevigata	RLG00000003320 RLG00000003321 RLG00000003322 RLG00000003323 RLG00000003332 RLG00000003335
rosa_multiflora	Rmu_co8193150.1_g000001 Rmu_co8257597.1_g000001 Rmu_sc0000076.1_g000010 Rmu_sc0000076.1_g000011 Rmu_sc0004084.1_g000032 Rmu_sc0004084.1_g000049 Rmu_sc0005065.1_g000013 Rmu_sc0005065.1_g000014 Rmu_sc0006841.1_g000008 Rmu_sc0006841.1_g000010 Rmu_sc0006841.1_g000011 Rmu_sc0007739.1_g000013 Rmu_sc0007739.1_g000014
rosa_roxburghii	Rroxscaffold_3G00251630 Rroxscaffold_3G00251640 Rroxscaffold_3G00251710 Rroxscaffold_3G00251720 Rroxscaffold_3G00251730 Rroxscaffold_3G00251740 Rroxscaffold_3G00251800
rosa_rugosa	Rorug07G0096200
rosa_samantha	Rh7AG226900 Rh7AG227000 Rh7AG227100 Rh7AG227200 Rh7AG228200 Rh7AG228300 Rh7BG223200 Rh7BG223300 Rh7BG224500 Rh7BG224600 Rh7CG241200 Rh7CG241300 Rh7CG241400 Rh7CG241500 Rh7CG241600 Rh7CG242800 Rh7DG234300 Rh7DG234400 Rh7DG234500 Rh7DG234600 Rh7DG234700 Rh7DG234800 Rh7DG235400 Rh7DG235500 Rh7DG235600
rosa_wichuraiana	Rw7G019490 Rw7G019520 Rw7G019560 Rw7G019600 Rw7G019610 Rw7G019660 Rw7G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	547
AciI	CCGC	1 cut(s)	522
AcsI	RAATTY	1 cut(s)	304
AcuI	CTGAAG	1 cut(s)	317
AgeI	ACCGGT	1 cut(s)	19
AgsI	TTSAA	4 cut(s)	64, 304, 493, 664
AluBI	AGCT	7 cut(s)	100, 160, 194, 211, 445, 604, 679
AluI	AGCT	7 cut(s)	100, 160, 194, 211, 445, 604, 679
AlwNI	CAGNNNCTG	1 cut(s)	445
AoxI	GGCC	6 cut(s)	283, 293, 377, 479, 650, 745
ApoI	RAATTY	1 cut(s)	304
AsiGI	ACCGGT	1 cut(s)	19
Asp700I	GAANNNNTTC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	746
AsuHPI	GGTGA	2 cut(s)	338, 586
BfmI	CTRYAG	2 cut(s)	446, 605
BfuAI	ACCTGC	1 cut(s)	547
BglII	AGATCT	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	746
BmsI	GCATC	7 cut(s)	119, 206, 286, 355, 533, 601, 628
Bpu10I	CCTNAGC	3 cut(s)	207, 624, 710
BpuEI	CTTGAG	2 cut(s)	86, 371
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	1 cut(s)	735
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	399
Bse3DI	GCAATG	2 cut(s)	233, 422
BseGI	GGATG	3 cut(s)	403, 457, 619
BseMI	GCAATG	2 cut(s)	233, 422
BseMII	CTCAG	4 cut(s)	198, 255, 615, 701
BseNI	ACTGG	1 cut(s)	399
BshFI	GGCC	6 cut(s)	285, 295, 379, 481, 652, 747
BshTI	ACCGGT	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	20
BsnI	GGCC	6 cut(s)	285, 295, 379, 481, 652, 747
Bsp143I	GATC	2 cut(s)	37, 121
BspACI	CCGC	1 cut(s)	522
BspANI	GGCC	6 cut(s)	285, 295, 379, 481, 652, 747
BspCNI	CTCAG	4 cut(s)	199, 254, 616, 702
BspHI	TCATGA	1 cut(s)	595
BspMAI	CTGCAG	2 cut(s)	450, 609
BspMI	ACCTGC	1 cut(s)	547
BsrDI	GCAATG	2 cut(s)	233, 422
BsrFI	RCCGGY	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	399
BssAI	RCCGGY	1 cut(s)	19
BssMI	GATC	2 cut(s)	37, 121
Bst4CI	ACNGT	1 cut(s)	564
BstC8I	GCNNGC	4 cut(s)	293, 377, 429, 650
BstDEI	CTNAG	7 cut(s)	207, 241, 297, 432, 486, 624, 710
BstF5I	GGATG	3 cut(s)	403, 457, 619
BstKTI	GATC	2 cut(s)	40, 124
BstMBI	GATC	2 cut(s)	37, 121
BstMWI	GCNNNNNNNGC	5 cut(s)	343, 352, 616, 625, 711
BstSFI	CTRYAG	2 cut(s)	446, 605
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	6 cut(s)	285, 295, 379, 481, 652, 747
BtsCI	GGATG	3 cut(s)	403, 457, 619
BtsIMutI	CAGTG	2 cut(s)	120, 560
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	4 cut(s)	293, 377, 429, 650
CaiI	CAGNNNCTG	1 cut(s)	445
CciI	TCATGA	1 cut(s)	595
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	746
CspAI	ACCGGT	1 cut(s)	19
CviAII	CATG	2 cut(s)	44, 596
DdeI	CTNAG	7 cut(s)	207, 241, 297, 432, 486, 624, 710
DpnI	GATC	2 cut(s)	39, 123
DpnII	GATC	2 cut(s)	37, 121
Eco147I	AGGCCT	5 cut(s)	285, 295, 379, 481, 652
Eco57I	CTGAAG	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	746
EcoRI	GAATTC	1 cut(s)	304
FaeI	CATG	2 cut(s)	47, 599
FaiI	YATR	8 cut(s)	45, 168, 170, 255, 321, 503, 534, 597
FatI	CATG	2 cut(s)	43, 595
FauNDI	CATATG	1 cut(s)	168
FokI	GGATG	3 cut(s)	410, 464, 606
HaeIII	GGCC	6 cut(s)	285, 295, 379, 481, 652, 747
HapII	CCGG	1 cut(s)	20
Hin1II	CATG	2 cut(s)	47, 599
HincII	GTYRAC	1 cut(s)	50
HindII	GTYRAC	1 cut(s)	50
HinfI	GANTC	3 cut(s)	557, 577, 664
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	338, 586
Hpy166II	GTNNAC	4 cut(s)	50, 95, 182, 329
Hpy188I	TCNGA	2 cut(s)	244, 441
Hpy188III	TCNNGA	5 cut(s)	350, 581, 596, 623, 668
Hpy8I	GTNNAC	4 cut(s)	50, 95, 182, 329
HpyAV	CCTTC	2 cut(s)	636, 679
HpyCH4III	ACNGT	1 cut(s)	564
HpyCH4V	TGCA	6 cut(s)	28, 148, 197, 407, 448, 607
HpyF10VI	GCNNNNNNNGC	5 cut(s)	343, 352, 616, 625, 711
HpyF3I	CTNAG	7 cut(s)	207, 241, 297, 432, 486, 624, 710
Hsp92II	CATG	2 cut(s)	47, 599
Kzo9I	GATC	2 cut(s)	37, 121
LweI	GCATC	7 cut(s)	119, 206, 286, 355, 533, 601, 628
MalI	GATC	2 cut(s)	39, 123
MboI	GATC	2 cut(s)	37, 121
MboII	GAAGA	4 cut(s)	116, 131, 166, 425
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	1 cut(s)	304
MnlI	CCTC	8 cut(s)	138, 250, 390, 471, 492, 663, 733, 737
MroXI	GAANNNNTTC	1 cut(s)	123
MseI	TTAA	1 cut(s)	569
MslI	CAYNNNNRTG	3 cut(s)	252, 324, 597
MspI	CCGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	5 cut(s)	343, 352, 616, 625, 711
NdeI	CATATG	1 cut(s)	168
NdeII	GATC	2 cut(s)	37, 121
NlaIII	CATG	2 cut(s)	47, 599
PagI	TCATGA	1 cut(s)	595
PceI	AGGCCT	5 cut(s)	285, 295, 379, 481, 652
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	3 cut(s)	557, 577, 664
PinAI	ACCGGT	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	746
PstI	CTGCAG	2 cut(s)	450, 609
PstNI	CAGNNNCTG	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	121
RseI	CAYNNNNRTG	3 cut(s)	252, 324, 597
SaqAI	TTAA	1 cut(s)	569
Sau3AI	GATC	2 cut(s)	37, 121
Sau96I	GGNCC	1 cut(s)	746
SfaNI	GCATC	7 cut(s)	119, 206, 286, 355, 533, 601, 628
SfcI	CTRYAG	2 cut(s)	446, 605
SmiMI	CAYNNNNRTG	3 cut(s)	252, 324, 597
SmlI	CTYRAG	2 cut(s)	101, 350
SmoI	CTYRAG	2 cut(s)	101, 350
Sse9I	AATT	1 cut(s)	304
SseBI	AGGCCT	5 cut(s)	285, 295, 379, 481, 652
SsiI	CCGC	1 cut(s)	522
StuI	AGGCCT	5 cut(s)	285, 295, 379, 481, 652
TaaI	ACNGT	1 cut(s)	564
TaqI	TCGA	2 cut(s)	548, 655
TasI	AATT	1 cut(s)	304
TauI	GCSGC	1 cut(s)	524
TfiI	GAWTC	3 cut(s)	557, 577, 664
Tru1I	TTAA	1 cut(s)	569
Tru9I	TTAA	1 cut(s)	569
TscAI	CASTG	2 cut(s)	120, 567
TspDTI	ATGAA	5 cut(s)	185, 287, 426, 468, 549
TspRI	CASTG	2 cut(s)	120, 567
XapI	RAATTY	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.