Domain in histone families 1 and 5
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Linker_histone | PF00538 | 37 - 96 | 6e-09 | linker histone H1 and H5 family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 993, 1650 |
| Acc36I | ACCTGC | 1 cut(s) | 1413 |
| AccB1I | GGYRCC | 2 cut(s) | 2257, 2550 |
| AccBSI | CCGCTC | 1 cut(s) | 273 |
| AccI | GTMKAC | 2 cut(s) | 1144, 2446 |
| AccII | CGCG | 1 cut(s) | 2548 |
| AciI | CCGC | 9 cut(s) | 273, 590, 1484, 2501, 2533, 2546, 2548, 2866, 3377 |
| AclWI | GGATC | 7 cut(s) | 745, 1399, 1609, 2379, 2725, 3003, 3197 |
| AcoI | YGGCCR | 1 cut(s) | 3418 |
| AcsI | RAATTY | 4 cut(s) | 191, 789, 1839, 3122 |
| AcyI | GRCGYC | 1 cut(s) | 2551 |
| AfaI | GTAC | 2 cut(s) | 618, 3141 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 911, 1809, 2063 |
| AflIII | ACRYGT | 2 cut(s) | 436, 1088 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2476 |
| AjiI | CACGTC | 1 cut(s) | 2568 |
| AjnI | CCWGG | 1 cut(s) | 2521 |
| AleI | CACNNNNGTG | 1 cut(s) | 3246 |
| Alw21I | GWGCWC | 2 cut(s) | 1744, 2873 |
| Alw26I | GTCTC | 2 cut(s) | 647, 1715 |
| Alw44I | GTGCAC | 1 cut(s) | 2869 |
| AlwI | GGATC | 7 cut(s) | 745, 1399, 1609, 2379, 2725, 3003, 3197 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 146 |
| AoxI | GGCC | 4 cut(s) | 2362, 2644, 3398, 3418 |
| ApaLI | GTGCAC | 1 cut(s) | 2869 |
| ApoI | RAATTY | 4 cut(s) | 191, 789, 1839, 3122 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 489, 1245, 1734, 2946 |
| AspA2I | CCTAGG | 3 cut(s) | 2435, 2956, 2990 |
| AspLEI | GCGC | 2 cut(s) | 2553, 3159 |
| AspS9I | GGNCC | 2 cut(s) | 2362, 2960 |
| AsuHPI | GGTGA | 7 cut(s) | 101, 733, 1172, 1177, 1384, 2816, 3222 |
| AvaII | GGWCC | 1 cut(s) | 2960 |
| AvrII | CCTAGG | 3 cut(s) | 2435, 2956, 2990 |
| BaeGI | GKGCMC | 1 cut(s) | 2873 |
| BalI | TGGCCA | 1 cut(s) | 3420 |
| BanI | GGYRCC | 2 cut(s) | 2257, 2550 |
| BauI | CACGAG | 1 cut(s) | 3074 |
| BbsI | GAAGAC | 2 cut(s) | 534, 1140 |
| Bbv12I | GWGCWC | 2 cut(s) | 1744, 2873 |
| BbvCI | CCTCAGC | 1 cut(s) | 2621 |
| BccI | CCATC | 6 cut(s) | 1634, 1745, 2128, 2236, 2267, 2389 |
| BceAI | ACGGC | 2 cut(s) | 488, 2982 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2297, 2331 |
| BciT130I | CCWGG | 1 cut(s) | 2523 |
| BciVI | GTATCC | 1 cut(s) | 3223 |
| BclI | TGATCA | 1 cut(s) | 2022 |
| BcoDI | GTCTC | 2 cut(s) | 647, 1715 |
| BfaI | CTAG | 9 cut(s) | 701, 953, 1148, 1850, 2436, 2721, 2957, 2991, 3315 |
| BfmI | CTRYAG | 1 cut(s) | 3135 |
| BfoI | RGCGCY | 1 cut(s) | 2554 |
| BfuAI | ACCTGC | 1 cut(s) | 1413 |
| BfuI | GTATCC | 1 cut(s) | 3223 |
| BglII | AGATCT | 1 cut(s) | 2786 |
| BlnI | CCTAGG | 3 cut(s) | 2435, 2956, 2990 |
| Bme1390I | CCNGG | 1 cut(s) | 2523 |
| Bme18I | GGWCC | 1 cut(s) | 2960 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2476 |
| BmgBI | CACGTC | 1 cut(s) | 2568 |
| BmgT120I | GGNCC | 2 cut(s) | 2362, 2960 |
| BmiI | GGNNCC | 4 cut(s) | 348, 486, 2259, 2552 |
| BmrFI | CCNGG | 1 cut(s) | 2523 |
| BmsI | GCATC | 8 cut(s) | 938, 1624, 1690, 1999, 2636, 2965, 3277, 3304 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1140 |
| BpiI | GAAGAC | 2 cut(s) | 534, 1140 |
| BpmI | CTGGAG | 2 cut(s) | 726, 1590 |
| Bpu10I | CCTNAGC | 2 cut(s) | 45, 2621 |
| BpuEI | CTTGAG | 4 cut(s) | 63, 262, 2438, 3086 |
| BsaHI | GRCGYC | 1 cut(s) | 2551 |
| BsaJI | CCNNGG | 9 cut(s) | 609, 1803, 2062, 2213, 2435, 2546, 2896, 2956, 2990 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 267, 297 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 911, 1809, 2063 |
| Bse118I | RCCGGY | 1 cut(s) | 3432 |
| Bse1I | ACTGG | 5 cut(s) | 454, 1250, 1307, 2719, 3421 |
| Bse3DI | GCAATG | 3 cut(s) | 1026, 1481, 1796 |
| BseBI | CCWGG | 1 cut(s) | 2523 |
| BseDI | CCNNGG | 9 cut(s) | 609, 1803, 2062, 2213, 2435, 2546, 2896, 2956, 2990 |
| BseGI | GGATG | 7 cut(s) | 953, 1405, 1756, 1988, 2092, 2278, 2758 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 911, 1809, 2063 |
| BseMI | GCAATG | 3 cut(s) | 1026, 1481, 1796 |
| BseMII | CTCAG | 5 cut(s) | 36, 138, 837, 2073, 2612 |
| BseNI | ACTGG | 5 cut(s) | 454, 1250, 1307, 2719, 3421 |
| BseRI | GAGGAG | 6 cut(s) | 927, 2105, 2294, 2351, 2771, 3278 |
| BseSI | GKGCMC | 1 cut(s) | 2873 |
| BseYI | CCCAGC | 4 cut(s) | 376, 2359, 2856, 3066 |
| BsgI | GTGCAG | 1 cut(s) | 1869 |
| Bsh1236I | CGCG | 1 cut(s) | 2548 |
| Bsh1285I | CGRYCG | 1 cut(s) | 910 |
| BshFI | GGCC | 4 cut(s) | 2364, 2646, 3400, 3420 |
| BshNI | GGYRCC | 2 cut(s) | 2257, 2550 |
| BsiEI | CGRYCG | 1 cut(s) | 910 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1744, 2873 |
| BsiSI | CCGG | 3 cut(s) | 314, 3206, 3433 |
| BslFI | GGGAC | 1 cut(s) | 1821 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 911, 1809, 2063 |
| BsmAI | GTCTC | 2 cut(s) | 647, 1715 |
| BsmFI | GGGAC | 1 cut(s) | 1821 |
| BsmI | GAATGC | 1 cut(s) | 2799 |
| BsnI | GGCC | 4 cut(s) | 2364, 2646, 3400, 3420 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1744, 2873 |
| Bsp19I | CCATGG | 2 cut(s) | 609, 2062 |
| BspACI | CCGC | 9 cut(s) | 273, 590, 1484, 2501, 2533, 2546, 2548, 2866, 3377 |
| BspANI | GGCC | 4 cut(s) | 2364, 2646, 3400, 3420 |
| BspCNI | CTCAG | 5 cut(s) | 37, 139, 838, 2074, 2613 |
| BspFNI | CGCG | 1 cut(s) | 2548 |
| BspHI | TCATGA | 2 cut(s) | 229, 3271 |
| BspLI | GGNNCC | 4 cut(s) | 348, 486, 2259, 2552 |
| BspMI | ACCTGC | 1 cut(s) | 1413 |
| BspPI | GGATC | 7 cut(s) | 745, 1399, 1609, 2379, 2725, 3003, 3197 |
| BspQI | GCTCTTC | 1 cut(s) | 2610 |
| BspT107I | GGYRCC | 2 cut(s) | 2257, 2550 |
| BsrBI | CCGCTC | 1 cut(s) | 273 |
| BsrDI | GCAATG | 3 cut(s) | 1026, 1481, 1796 |
| BsrFI | RCCGGY | 1 cut(s) | 3432 |
| BsrI | ACTGG | 5 cut(s) | 454, 1250, 1307, 2719, 3421 |
| BssAI | RCCGGY | 1 cut(s) | 3432 |
| BssECI | CCNNGG | 9 cut(s) | 609, 1803, 2062, 2213, 2435, 2546, 2896, 2956, 2990 |
| BssNAI | GTATAC | 1 cut(s) | 2447 |
| BssNI | GRCGYC | 1 cut(s) | 2551 |
| BssSI | CACGAG | 1 cut(s) | 3074 |
| BssT1I | CCWWGG | 6 cut(s) | 609, 2062, 2435, 2896, 2956, 2990 |
| Bst1107I | GTATAC | 1 cut(s) | 2447 |
| Bst2BI | CACGAG | 1 cut(s) | 3074 |
| Bst2UI | CCWGG | 1 cut(s) | 2523 |
| Bst4CI | ACNGT | 8 cut(s) | 215, 302, 1200, 1770, 1812, 2780, 3182, 3331 |
| Bst6I | CTCTTC | 4 cut(s) | 359, 495, 645, 2610 |
| BstACI | GRCGYC | 1 cut(s) | 2551 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 889, 3154 |
| BstC8I | GCNNGC | 1 cut(s) | 2289 |
| BstDEI | CTNAG | 8 cut(s) | 45, 147, 263, 846, 924, 2082, 2262, 2621 |
| BstDSI | CCRYGG | 4 cut(s) | 609, 1803, 2062, 2546 |
| BstF5I | GGATG | 7 cut(s) | 953, 1405, 1756, 1988, 2092, 2278, 2758 |
| BstFNI | CGCG | 1 cut(s) | 2548 |
| BstH2I | RGCGCY | 1 cut(s) | 2554 |
| BstHHI | GCGC | 2 cut(s) | 2553, 3159 |
| BstMAI | GTCTC | 2 cut(s) | 647, 1715 |
| BstMCI | CGRYCG | 1 cut(s) | 910 |
| BstNI | CCWGG | 1 cut(s) | 2523 |
| BstNSI | RCATGY | 4 cut(s) | 440, 470, 1092, 2409 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1140 |
| BstSCI | CCNGG | 1 cut(s) | 2521 |
| BstSFI | CTRYAG | 1 cut(s) | 3135 |
| BstSLI | GKGCMC | 1 cut(s) | 2873 |
| BstUI | CGCG | 1 cut(s) | 2548 |
| BstV2I | GAAGAC | 2 cut(s) | 534, 1140 |
| BstX2I | RGATCY | 5 cut(s) | 737, 1391, 1601, 2717, 2786 |
| BstYI | RGATCY | 5 cut(s) | 737, 1391, 1601, 2717, 2786 |
| BstZ17I | GTATAC | 1 cut(s) | 2447 |
| BsuI | GTATCC | 1 cut(s) | 3223 |
| BsuRI | GGCC | 4 cut(s) | 2364, 2646, 3400, 3420 |
| BtgI | CCRYGG | 4 cut(s) | 609, 1803, 2062, 2546 |
| BtrI | CACGTC | 1 cut(s) | 2568 |
| BtsCI | GGATG | 7 cut(s) | 953, 1405, 1756, 1988, 2092, 2278, 2758 |
| BtsI | GCAGTG | 3 cut(s) | 1272, 1464, 1683 |
| BveI | ACCTGC | 1 cut(s) | 1413 |
| Cac8I | GCNNGC | 1 cut(s) | 2289 |
| CaiI | CAGNNNCTG | 1 cut(s) | 146 |
| CciI | TCATGA | 2 cut(s) | 229, 3271 |
| CfoI | GCGC | 2 cut(s) | 2553, 3159 |
| Cfr10I | RCCGGY | 1 cut(s) | 3432 |
| Cfr13I | GGNCC | 2 cut(s) | 2362, 2960 |
| Cfr42I | CCGCGG | 1 cut(s) | 2549 |
| CseI | GACGC | 1 cut(s) | 2531 |
| Csp6I | GTAC | 2 cut(s) | 617, 3140 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3096, 3131 |
| CviQI | GTAC | 2 cut(s) | 617, 3140 |
| DdeI | CTNAG | 8 cut(s) | 45, 147, 263, 846, 924, 2082, 2262, 2621 |
| DinI | GGCGCC | 1 cut(s) | 2552 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 993, 1650 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2476 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 993, 1650 |
| EaeI | YGGCCR | 1 cut(s) | 3418 |
| Eam1104I | CTCTTC | 4 cut(s) | 359, 495, 645, 2610 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2476 |
| EarI | CTCTTC | 4 cut(s) | 359, 495, 645, 2610 |
| Eco130I | CCWWGG | 6 cut(s) | 609, 2062, 2435, 2896, 2956, 2990 |
| Eco147I | AGGCCT | 1 cut(s) | 3400 |
| Eco47I | GGWCC | 1 cut(s) | 2960 |
| EcoRII | CCWGG | 1 cut(s) | 2521 |
| EcoT14I | CCWWGG | 6 cut(s) | 609, 2062, 2435, 2896, 2956, 2990 |
| EcoT22I | ATGCAT | 1 cut(s) | 2407 |
| EgeI | GGCGCC | 1 cut(s) | 2552 |
| EheI | GGCGCC | 1 cut(s) | 2552 |
| ErhI | CCWWGG | 6 cut(s) | 609, 2062, 2435, 2896, 2956, 2990 |
| FaqI | GGGAC | 1 cut(s) | 1821 |
| FauNDI | CATATG | 1 cut(s) | 3162 |
| FbaI | TGATCA | 1 cut(s) | 2022 |
| FblI | GTMKAC | 2 cut(s) | 1144, 2446 |
| FokI | GGATG | 7 cut(s) | 960, 1412, 1763, 1975, 2099, 2285, 2765 |
| FspBI | CTAG | 9 cut(s) | 701, 953, 1148, 1850, 2436, 2721, 2957, 2991, 3315 |
| GlaI | GCGC | 2 cut(s) | 2552, 3158 |
| GsaI | CCCAGC | 4 cut(s) | 380, 2363, 2860, 3070 |
| GsuI | CTGGAG | 2 cut(s) | 726, 1590 |
| HaeII | RGCGCY | 1 cut(s) | 2554 |
| HaeIII | GGCC | 4 cut(s) | 2364, 2646, 3400, 3420 |
| HapII | CCGG | 3 cut(s) | 314, 3206, 3433 |
| HgaI | GACGC | 1 cut(s) | 2531 |
| HhaI | GCGC | 2 cut(s) | 2553, 3159 |
| Hin1I | GRCGYC | 1 cut(s) | 2551 |
| Hin6I | GCGC | 2 cut(s) | 2551, 3157 |
| HinP1I | GCGC | 2 cut(s) | 2551, 3157 |
| HpaII | CCGG | 3 cut(s) | 314, 3206, 3433 |
| HphI | GGTGA | 7 cut(s) | 101, 733, 1172, 1177, 1384, 2816, 3222 |
| Hpy166II | GTNNAC | 6 cut(s) | 1145, 1352, 2447, 2565, 2871, 3334 |
| Hpy8I | GTNNAC | 6 cut(s) | 1145, 1352, 2447, 2565, 2871, 3334 |
| HpyAV | CCTTC | 8 cut(s) | 130, 155, 336, 1817, 2248, 2375, 2603, 2748 |
| HpyCH4III | ACNGT | 8 cut(s) | 215, 302, 1200, 1770, 1812, 2780, 3182, 3331 |
| HpyCH4IV | ACGT | 4 cut(s) | 531, 1546, 1581, 2567 |
| HpyF3I | CTNAG | 8 cut(s) | 45, 147, 263, 846, 924, 2082, 2262, 2621 |
| HpySE526I | ACGT | 4 cut(s) | 531, 1546, 1581, 2567 |
| Hsp92I | GRCGYC | 1 cut(s) | 2551 |
| HspAI | GCGC | 2 cut(s) | 2551, 3157 |
| KasI | GGCGCC | 1 cut(s) | 2550 |
| Ksp22I | TGATCA | 1 cut(s) | 2022 |
| KspI | CCGCGG | 1 cut(s) | 2549 |
| LguI | GCTCTTC | 1 cut(s) | 2610 |
| LmnI | GCTCC | 8 cut(s) | 346, 880, 1486, 2092, 2281, 2305, 2338, 3265 |
| LweI | GCATC | 8 cut(s) | 938, 1624, 1690, 1999, 2636, 2965, 3277, 3304 |
| MaeI | CTAG | 9 cut(s) | 701, 953, 1148, 1850, 2436, 2721, 2957, 2991, 3315 |
| MaeII | ACGT | 4 cut(s) | 531, 1546, 1581, 2567 |
| MaeIII | GTNAC | 8 cut(s) | 631, 1099, 1315, 1678, 1812, 1845, 2299, 2822 |
| MbiI | CCGCTC | 1 cut(s) | 273 |
| MfeI | CAATTG | 3 cut(s) | 1523, 1938, 2537 |
| MflI | RGATCY | 5 cut(s) | 737, 1391, 1601, 2717, 2786 |
| MhlI | GDGCHC | 2 cut(s) | 1744, 2873 |
| MlsI | TGGCCA | 1 cut(s) | 3420 |
| MluNI | TGGCCA | 1 cut(s) | 3420 |
| Mly113I | GGCGCC | 1 cut(s) | 2551 |
| MlyI | GAGTC | 4 cut(s) | 253, 694, 706, 3329 |
| Mox20I | TGGCCA | 1 cut(s) | 3420 |
| Mph1103I | ATGCAT | 1 cut(s) | 2407 |
| MroXI | GAANNNNTTC | 4 cut(s) | 489, 1245, 1734, 2946 |
| MscI | TGGCCA | 1 cut(s) | 3420 |
| MseI | TTAA | 3 cut(s) | 1206, 1946, 2484 |
| MslI | CAYNNNNRTG | 2 cut(s) | 3246, 3273 |
| Msp20I | TGGCCA | 1 cut(s) | 3420 |
| MspA1I | CMGCKG | 6 cut(s) | 2533, 2548, 3145, 3154, 3365, 3426 |
| MspI | CCGG | 3 cut(s) | 314, 3206, 3433 |
| MspR9I | CCNGG | 1 cut(s) | 2523 |
| MunI | CAATTG | 3 cut(s) | 1523, 1938, 2537 |
| Mva1269I | GAATGC | 1 cut(s) | 2799 |
| MvaI | CCWGG | 1 cut(s) | 2523 |
| MvnI | CGCG | 1 cut(s) | 2548 |
| NarI | GGCGCC | 1 cut(s) | 2551 |
| NcoI | CCATGG | 2 cut(s) | 609, 2062 |
| NdeI | CATATG | 1 cut(s) | 3162 |
| NlaIV | GGNNCC | 4 cut(s) | 348, 486, 2259, 2552 |
| NmeAIII | GCCGAG | 1 cut(s) | 2194 |
| NmuCI | GTSAC | 6 cut(s) | 631, 1099, 1315, 1678, 2299, 2822 |
| NsiI | ATGCAT | 1 cut(s) | 2407 |
| NspI | RCATGY | 4 cut(s) | 440, 470, 1092, 2409 |
| OliI | CACNNNNGTG | 1 cut(s) | 3246 |
| PagI | TCATGA | 2 cut(s) | 229, 3271 |
| PceI | AGGCCT | 1 cut(s) | 3400 |
| PciI | ACATGT | 2 cut(s) | 436, 1088 |
| PciSI | GCTCTTC | 1 cut(s) | 2610 |
| PctI | GAATGC | 1 cut(s) | 2799 |
| PdmI | GAANNNNTTC | 4 cut(s) | 489, 1245, 1734, 2946 |
| PfeI | GAWTC | 7 cut(s) | 237, 329, 1964, 2234, 2833, 3224, 3307 |
| Ple19I | CGATCG | 1 cut(s) | 910 |
| PleI | GAGTC | 4 cut(s) | 252, 693, 705, 3329 |
| PluTI | GGCGCC | 1 cut(s) | 2554 |
| PpsI | GAGTC | 4 cut(s) | 252, 693, 705, 3329 |
| PscI | ACATGT | 2 cut(s) | 436, 1088 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1140 |
| Psp6I | CCWGG | 1 cut(s) | 2521 |
| PspFI | CCCAGC | 4 cut(s) | 376, 2359, 2856, 3066 |
| PspGI | CCWGG | 1 cut(s) | 2521 |
| PspN4I | GGNNCC | 4 cut(s) | 348, 486, 2259, 2552 |
| PspPI | GGNCC | 2 cut(s) | 2362, 2960 |
| PstNI | CAGNNNCTG | 1 cut(s) | 146 |
| PsuI | RGATCY | 5 cut(s) | 737, 1391, 1601, 2717, 2786 |
| PvuI | CGATCG | 1 cut(s) | 910 |
| PvuII | CAGCTG | 4 cut(s) | 3145, 3154, 3365, 3426 |
| RsaI | GTAC | 2 cut(s) | 618, 3141 |
| RsaNI | GTAC | 2 cut(s) | 617, 3140 |
| RseI | CAYNNNNRTG | 2 cut(s) | 3246, 3273 |
| SacII | CCGCGG | 1 cut(s) | 2549 |
| SapI | GCTCTTC | 1 cut(s) | 2610 |
| SaqAI | TTAA | 3 cut(s) | 1206, 1946, 2484 |
| Sau96I | GGNCC | 2 cut(s) | 2362, 2960 |
| SchI | GAGTC | 4 cut(s) | 253, 694, 706, 3329 |
| ScrFI | CCNGG | 1 cut(s) | 2523 |
| SduI | GDGCHC | 2 cut(s) | 1744, 2873 |
| SfaNI | GCATC | 8 cut(s) | 938, 1624, 1690, 1999, 2636, 2965, 3277, 3304 |
| SfcI | CTRYAG | 1 cut(s) | 3135 |
| SfoI | GGCGCC | 1 cut(s) | 2552 |
| Sfr303I | CCGCGG | 1 cut(s) | 2549 |
| SgrBI | CCGCGG | 1 cut(s) | 2549 |
| SinI | GGWCC | 1 cut(s) | 2960 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 3246, 3273 |
| SmlI | CTYRAG | 4 cut(s) | 78, 241, 2417, 3101 |
| SmoI | CTYRAG | 4 cut(s) | 78, 241, 2417, 3101 |
| SseBI | AGGCCT | 1 cut(s) | 3400 |
| SsiI | CCGC | 9 cut(s) | 273, 590, 1484, 2501, 2533, 2546, 2548, 2866, 3377 |
| SspDI | GGCGCC | 1 cut(s) | 2550 |
| SspMI | CTAG | 9 cut(s) | 701, 953, 1148, 1850, 2436, 2721, 2957, 2991, 3315 |
| StuI | AGGCCT | 1 cut(s) | 3400 |
| StyD4I | CCNGG | 1 cut(s) | 2521 |
| StyI | CCWWGG | 6 cut(s) | 609, 2062, 2435, 2896, 2956, 2990 |
| TaaI | ACNGT | 8 cut(s) | 215, 302, 1200, 1770, 1812, 2780, 3182, 3331 |
| TaiI | ACGT | 4 cut(s) | 534, 1549, 1584, 2570 |
| TatI | WGTACW | 2 cut(s) | 616, 3139 |
| TauI | GCSGC | 3 cut(s) | 2536, 2551, 3379 |
| TfiI | GAWTC | 7 cut(s) | 237, 329, 1964, 2234, 2833, 3224, 3307 |
| Tru1I | TTAA | 3 cut(s) | 1206, 1946, 2484 |
| Tru9I | TTAA | 3 cut(s) | 1206, 1946, 2484 |
| TseFI | GTSAC | 6 cut(s) | 631, 1099, 1315, 1678, 2299, 2822 |
| Tsp45I | GTSAC | 6 cut(s) | 631, 1099, 1315, 1678, 2299, 2822 |
| TspGWI | ACGGA | 2 cut(s) | 697, 2318 |
| VneI | GTGCAC | 1 cut(s) | 2869 |
| VpaK11BI | GGWCC | 1 cut(s) | 2960 |
| XapI | RAATTY | 4 cut(s) | 191, 789, 1839, 3122 |
| XbaI | TCTAGA | 1 cut(s) | 700 |
| XceI | RCATGY | 4 cut(s) | 440, 470, 1092, 2409 |
| XmaJI | CCTAGG | 3 cut(s) | 2435, 2956, 2990 |
| XmiI | GTMKAC | 2 cut(s) | 1144, 2446 |
| XmnI | GAANNNNTTC | 4 cut(s) | 489, 1245, 1734, 2946 |
| XspI | CTAG | 9 cut(s) | 701, 953, 1148, 1850, 2436, 2721, 2957, 2991, 3315 |
| Zsp2I | ATGCAT | 1 cut(s) | 2407 |