Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007739.1

Orthogroup ID

OG0000827

Physical Location & Seq

Genomic Coordinates Forward (+)

53476 .. 54519

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007739.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ctgacaccaaatgaccaatcttgtcgaacacaacctgagcaaaagcagcagcagaggcaactaggtctttcgggtaaacgaccatctgaatcttattgtgaagtagcagaggcacctaaataccaggatgagaaccatcaagcagaaaatgtgattaaggagaaggctgtacagtcaagtcacctgagtcttgaattgacagtaagtgagcagtcctgtcaaggacaattggagaaacatgagcaacaaccgcagaggcaattacgtcctcgaggtaaaaagtcagctgggtctgattgtggagtggcaacagcacctgaatgccaggagcagcagcccagagatccaatccaggaaagaatgaagcttgatcataaaccagcagagcagaggcaattgcgcccacgttgccagaggtgctccaagtctgaattgtctctcactacatctatggtcaaattatcaccaagaaaaaatcaggatactgaaaggaaaacagaggaaaagactggagagctgaagacatcactggaggaaacaggccaaggacagctgcagcagaggcagcttcgaacgagaagcaaaaacctgtctgaatccaagcattcattgctttcaaacactggaatgtcacaagggatcagccaggagccgaaaattcatctcaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

223

Amino Acids

25.35

Weight (kDa)

8.95

Isoelectric Point (pI)

66.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08780
fragaria_vesca	FvH4_5g27971
malus_domestica	MD06G1045800.v1.1
prunus_persica	Prupe.5G053600_v2.0.a1 Prupe.5G053600_v2.0.a1
pyrus_communis	pycom06g03880
rosa_chinensis	RchiOBHm_Chr7g0206261 RchiOBHm_Chr7g0206321 RchiOBHm_Chr7g0206331
rosa_laevigata	RLG00000003320 RLG00000003321 RLG00000003322 RLG00000003323 RLG00000003332 RLG00000003335
rosa_multiflora	Rmu_co8193150.1_g000001 Rmu_co8257597.1_g000001 Rmu_sc0000076.1_g000010 Rmu_sc0000076.1_g000011 Rmu_sc0004084.1_g000032 Rmu_sc0004084.1_g000049 Rmu_sc0005065.1_g000013 Rmu_sc0005065.1_g000014 Rmu_sc0006841.1_g000008 Rmu_sc0006841.1_g000010 Rmu_sc0006841.1_g000011 Rmu_sc0007739.1_g000013 Rmu_sc0007739.1_g000014
rosa_roxburghii	Rroxscaffold_3G00251630 Rroxscaffold_3G00251640 Rroxscaffold_3G00251710 Rroxscaffold_3G00251720 Rroxscaffold_3G00251730 Rroxscaffold_3G00251740 Rroxscaffold_3G00251800
rosa_rugosa	Rorug07G0096200
rosa_samantha	Rh7AG226900 Rh7AG227000 Rh7AG227100 Rh7AG227200 Rh7AG228200 Rh7AG228300 Rh7BG223200 Rh7BG223300 Rh7BG224500 Rh7BG224600 Rh7CG241200 Rh7CG241300 Rh7CG241400 Rh7CG241500 Rh7CG241600 Rh7CG242800 Rh7DG234300 Rh7DG234400 Rh7DG234500 Rh7DG234600 Rh7DG234700 Rh7DG234800 Rh7DG235400 Rh7DG235500 Rh7DG235600
rosa_wichuraiana	Rw7G019490 Rw7G019520 Rw7G019560 Rw7G019600 Rw7G019610 Rw7G019660 Rw7G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	270
AccB1I	GGYRCC	1 cut(s)	112
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	2 cut(s)	338, 647
AcsI	RAATTY	1 cut(s)	657
AcuI	CTGAAG	1 cut(s)	539
AfaI	GTAC	1 cut(s)	171
AgsI	TTSAA	2 cut(s)	194, 618
AjnI	CCWGG	4 cut(s)	123, 324, 351, 645
AluBI	AGCT	5 cut(s)	287, 367, 517, 553, 568
AluI	AGCT	5 cut(s)	287, 367, 517, 553, 568
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	1 cut(s)	441
AlwI	GGATC	2 cut(s)	338, 647
AlwNI	CAGNNNCTG	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	270
AoxI	GGCC	1 cut(s)	541
ApeKI	GCWGC	7 cut(s)	46, 49, 331, 334, 553, 556, 565
ApoI	RAATTY	1 cut(s)	657
AspLEI	GCGC	1 cut(s)	402
AsuHPI	GGTGA	2 cut(s)	173, 456
AsuII	TTCGAA	1 cut(s)	571
AvaI	CYCGRG	1 cut(s)	270
BanI	GGYRCC	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	527
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	7 cut(s)	58, 61, 343, 346, 540, 568, 577
BccI	CCATC	2 cut(s)	91, 144
BciT130I	CCWGG	4 cut(s)	125, 326, 353, 647
BciVI	GTATCC	1 cut(s)	475
BclI	TGATCA	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	441
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	554
BfuI	GTATCC	1 cut(s)	475
BisI	GCNGC	7 cut(s)	47, 50, 332, 335, 554, 557, 566
BlsI	GCNGC	7 cut(s)	48, 51, 333, 336, 555, 558, 567
Bme1390I	CCNGG	4 cut(s)	125, 326, 353, 647
BmeT110I	CYCGRG	1 cut(s)	270
BmiI	GGNNCC	2 cut(s)	114, 651
BmrFI	CCNGG	4 cut(s)	125, 326, 353, 647
BpiI	GAAGAC	1 cut(s)	527
BpmI	CTGGAG	2 cut(s)	531, 551
Bpu10I	CCTNAGC	1 cut(s)	36
Bpu14I	TTCGAA	1 cut(s)	571
BsaJI	CCNNGG	1 cut(s)	544
Bse1I	ACTGG	3 cut(s)	514, 534, 628
Bse3DI	GCAATG	1 cut(s)	608
BseBI	CCWGG	4 cut(s)	125, 326, 353, 647
BseDI	CCNNGG	1 cut(s)	544
BseGI	GGATG	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	608
BseMII	CTCAG	2 cut(s)	27, 176
BseNI	ACTGG	3 cut(s)	514, 534, 628
BseXI	GCAGC	7 cut(s)	58, 61, 343, 346, 540, 568, 577
BseYI	CCCAGC	1 cut(s)	287
BshFI	GGCC	1 cut(s)	543
BshNI	GGYRCC	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	422
BsiHKCI	CYCGRG	1 cut(s)	270
BsmAI	GTCTC	1 cut(s)	441
BsmI	GAATGC	2 cut(s)	326, 604
BsnI	GGCC	1 cut(s)	543
BsoBI	CYCGRG	1 cut(s)	270
Bsp119I	TTCGAA	1 cut(s)	571
Bsp1286I	GDGCHC	1 cut(s)	422
Bsp1407I	TGTACA	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	343, 370, 639
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	1 cut(s)	543
BspCNI	CTCAG	2 cut(s)	28, 177
BspLI	GGNNCC	2 cut(s)	114, 651
BspMAI	CTGCAG	1 cut(s)	558
BspPI	GGATC	2 cut(s)	338, 647
BspT104I	TTCGAA	1 cut(s)	571
BspT107I	GGYRCC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	608
BsrGI	TGTACA	1 cut(s)	169
BsrI	ACTGG	3 cut(s)	514, 534, 628
BssECI	CCNNGG	1 cut(s)	544
BssMI	GATC	3 cut(s)	343, 370, 639
BssT1I	CCWWGG	1 cut(s)	544
Bst2UI	CCWGG	4 cut(s)	125, 326, 353, 647
Bst4CI	ACNGT	2 cut(s)	174, 202
BstAPI	GCANNNNNTGC	1 cut(s)	610
BstAUI	TGTACA	1 cut(s)	169
BstBI	TTCGAA	1 cut(s)	571
BstDEI	CTNAG	2 cut(s)	36, 185
BstF5I	GGATG	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	3 cut(s)	346, 373, 642
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	3 cut(s)	343, 370, 639
BstMWI	GCNNNNNNNGC	8 cut(s)	46, 55, 250, 408, 417, 562, 565, 610
BstNI	CCWGG	4 cut(s)	125, 326, 353, 647
BstSCI	CCNGG	4 cut(s)	123, 324, 351, 645
BstSFI	CTRYAG	1 cut(s)	554
BstV1I	GCAGC	7 cut(s)	58, 61, 343, 346, 540, 568, 577
BstV2I	GAAGAC	1 cut(s)	527
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuI	GTATCC	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	543
BtsCI	GGATG	1 cut(s)	133
BtsIMutI	CAGTG	2 cut(s)	527, 621
CaiI	CAGNNNCTG	1 cut(s)	317
CfoI	GCGC	1 cut(s)	402
Csp6I	GTAC	1 cut(s)	170
CviAII	CATG	1 cut(s)	239
CviQI	GTAC	1 cut(s)	170
DdeI	CTNAG	2 cut(s)	36, 185
DpnI	GATC	3 cut(s)	345, 372, 641
DpnII	GATC	3 cut(s)	343, 370, 639
Eco130I	CCWWGG	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	539
Eco88I	CYCGRG	1 cut(s)	270
EcoRII	CCWGG	4 cut(s)	123, 324, 351, 645
EcoT14I	CCWWGG	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	544
FaeI	CATG	1 cut(s)	242
FaiI	YATR	3 cut(s)	240, 375, 452
FatI	CATG	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	7 cut(s)	47, 50, 332, 335, 554, 557, 566
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	7 cut(s)	47, 50, 332, 335, 554, 557, 566
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	7 cut(s)	47, 50, 332, 335, 554, 557, 566
GsaI	CCCAGC	1 cut(s)	291
GsuI	CTGGAG	2 cut(s)	531, 551
HaeIII	GGCC	1 cut(s)	543
HhaI	GCGC	1 cut(s)	402
Hin1II	CATG	1 cut(s)	242
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	3 cut(s)	89, 187, 596
HphI	GGTGA	2 cut(s)	173, 456
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	4 cut(s)	88, 295, 430, 595
Hpy188III	TCNNGA	2 cut(s)	191, 479
Hpy8I	GTNNAC	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	2 cut(s)	174, 202
HpyCH4IV	ACGT	2 cut(s)	265, 406
HpyCH4V	TGCA	1 cut(s)	556
HpyF10VI	GCNNNNNNNGC	8 cut(s)	46, 55, 250, 408, 417, 562, 565, 610
HpyF3I	CTNAG	2 cut(s)	36, 185
HpySE526I	ACGT	2 cut(s)	265, 406
Hsp92II	CATG	1 cut(s)	242
HspAI	GCGC	1 cut(s)	400
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	3 cut(s)	343, 370, 639
LmnI	GCTCC	3 cut(s)	328, 425, 649
Lsp1109I	GCAGC	7 cut(s)	58, 61, 343, 346, 540, 568, 577
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	2 cut(s)	265, 406
MaeIII	GTNAC	2 cut(s)	179, 630
MalI	GATC	3 cut(s)	345, 372, 641
MboI	GATC	3 cut(s)	343, 370, 639
MboII	GAAGA	1 cut(s)	532
MfeI	CAATTG	2 cut(s)	227, 395
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	422
MluCI	AATT	7 cut(s)	194, 227, 260, 395, 431, 458, 657
MlyI	GAGTC	1 cut(s)	196
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	2 cut(s)	319, 626
MspA1I	CMGCKG	2 cut(s)	287, 553
MspR9I	CCNGG	4 cut(s)	125, 326, 353, 647
MunI	CAATTG	2 cut(s)	227, 395
Mva1269I	GAATGC	2 cut(s)	326, 604
MvaI	CCWGG	4 cut(s)	125, 326, 353, 647
MwoI	GCNNNNNNNGC	8 cut(s)	46, 55, 250, 408, 417, 562, 565, 610
NdeII	GATC	3 cut(s)	343, 370, 639
NlaIII	CATG	1 cut(s)	242
NlaIV	GGNNCC	2 cut(s)	114, 651
NmuCI	GTSAC	2 cut(s)	179, 630
NspV	TTCGAA	1 cut(s)	571
PaeR7I	CTCGAG	1 cut(s)	270
PctI	GAATGC	2 cut(s)	326, 604
PfeI	GAWTC	2 cut(s)	89, 596
PfoI	TCCNGGA	1 cut(s)	351
PkrI	GCNGC	7 cut(s)	48, 51, 333, 336, 555, 558, 567
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
Psp6I	CCWGG	4 cut(s)	123, 324, 351, 645
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	4 cut(s)	123, 324, 351, 645
PspN4I	GGNNCC	2 cut(s)	114, 651
PspXI	VCTCGAGB	1 cut(s)	270
PstI	CTGCAG	1 cut(s)	558
PstNI	CAGNNNCTG	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	343
PvuII	CAGCTG	2 cut(s)	287, 553
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
RseI	CAYNNNNRTG	2 cut(s)	319, 626
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	7 cut(s)	47, 50, 332, 335, 554, 557, 566
Sau3AI	GATC	3 cut(s)	343, 370, 639
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	4 cut(s)	125, 326, 353, 647
SduI	GDGCHC	1 cut(s)	422
SfcI	CTRYAG	1 cut(s)	554
Sfr274I	CTCGAG	1 cut(s)	270
SfuI	TTCGAA	1 cut(s)	571
SlaI	CTCGAG	1 cut(s)	270
SmiMI	CAYNNNNRTG	2 cut(s)	319, 626
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
Sse9I	AATT	7 cut(s)	194, 227, 260, 395, 431, 458, 657
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	4 cut(s)	123, 324, 351, 645
StyI	CCWWGG	1 cut(s)	544
TaaI	ACNGT	2 cut(s)	174, 202
TaiI	ACGT	2 cut(s)	268, 409
TaqI	TCGA	3 cut(s)	25, 271, 571
TasI	AATT	7 cut(s)	194, 227, 260, 395, 431, 458, 657
TatI	WGTACW	1 cut(s)	169
TfiI	GAWTC	2 cut(s)	89, 596
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	2 cut(s)	534, 628
TseFI	GTSAC	2 cut(s)	179, 630
TseI	GCWGC	7 cut(s)	46, 49, 331, 334, 553, 556, 565
Tsp45I	GTSAC	2 cut(s)	179, 630
TspDTI	ATGAA	3 cut(s)	377, 597, 650
TspRI	CASTG	2 cut(s)	534, 628
XapI	RAATTY	1 cut(s)	657
XhoI	CTCGAG	1 cut(s)	270
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.