Domain in histone families 1 and 5
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Linker_histone | PF00538 | 46 - 107 | 4.8e-10 | linker histone H1 and H5 family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 3795 |
| AbsI | CCTCGAGG | 1 cut(s) | 3234 |
| Acc36I | ACCTGC | 1 cut(s) | 4705 |
| AccB1I | GGYRCC | 1 cut(s) | 3277 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2150 |
| AccI | GTMKAC | 1 cut(s) | 106 |
| AccII | CGCG | 1 cut(s) | 4854 |
| AciI | CCGC | 9 cut(s) | 1826, 1889, 2927, 3709, 4043, 4046, 4203, 4257, 4852 |
| AclI | AACGTT | 1 cut(s) | 1995 |
| AcoI | YGGCCR | 2 cut(s) | 1890, 4204 |
| AcsI | RAATTY | 8 cut(s) | 218, 742, 764, 1047, 1931, 2171, 2416, 2490 |
| AcuI | CTGAAG | 7 cut(s) | 222, 2045, 2571, 2759, 3506, 3840, 4793 |
| AcyI | GRCGYC | 1 cut(s) | 2900 |
| AdeI | CACNNNGTG | 1 cut(s) | 1627 |
| AfaI | GTAC | 7 cut(s) | 681, 900, 1005, 1679, 2346, 3135, 4864 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 431, 2150, 3671, 4414, 4882 |
| AflIII | ACRYGT | 4 cut(s) | 126, 1210, 1379, 1956 |
| AjiI | CACGTC | 1 cut(s) | 129 |
| AjnI | CCWGG | 3 cut(s) | 949, 3613, 3664 |
| Alw21I | GWGCWC | 1 cut(s) | 3734 |
| Alw26I | GTCTC | 6 cut(s) | 290, 2645, 3408, 3781, 3803, 4500 |
| Alw44I | GTGCAC | 1 cut(s) | 3730 |
| AlwNI | CAGNNNCTG | 7 cut(s) | 1981, 4060, 4063, 4174, 4177, 4603, 4771 |
| Ama87I | CYCGRG | 2 cut(s) | 3234, 3477 |
| ApaLI | GTGCAC | 1 cut(s) | 3730 |
| ApoI | RAATTY | 8 cut(s) | 218, 742, 764, 1047, 1931, 2171, 2416, 2490 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 834, 1770, 2820, 3825 |
| AspA2I | CCTAGG | 1 cut(s) | 4298 |
| AspLEI | GCGC | 3 cut(s) | 4083, 4182, 4856 |
| AspS9I | GGNCC | 8 cut(s) | 2153, 2353, 2474, 3097, 3839, 4066, 4355, 4404 |
| AsuC2I | CCSGG | 1 cut(s) | 3036 |
| AsuHPI | GGTGA | 9 cut(s) | 128, 365, 661, 1261, 1489, 1931, 2905, 3423, 4710 |
| AsuNHI | GCTAGC | 1 cut(s) | 2263 |
| AvaI | CYCGRG | 2 cut(s) | 3234, 3477 |
| AvaII | GGWCC | 4 cut(s) | 2153, 2474, 3097, 3839 |
| AvrII | CCTAGG | 1 cut(s) | 4298 |
| AxyI | CCTNAGG | 2 cut(s) | 2349, 3149 |
| BaeGI | GKGCMC | 1 cut(s) | 3734 |
| BamHI | GGATCC | 2 cut(s) | 2243, 3967 |
| BanI | GGYRCC | 1 cut(s) | 3277 |
| BanII | GRGCYC | 2 cut(s) | 3371, 3744 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 882, 914, 987, 1019 |
| BauI | CACGAG | 2 cut(s) | 2688, 2858 |
| BbsI | GAAGAC | 6 cut(s) | 266, 401, 2614, 2903, 3023, 3494 |
| Bbv12I | GWGCWC | 1 cut(s) | 3734 |
| BccI | CCATC | 9 cut(s) | 22, 1031, 2565, 3055, 3108, 3637, 3688, 4711, 4794 |
| BceAI | ACGGC | 3 cut(s) | 110, 3291, 4167 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3711, 3745 |
| BciT130I | CCWGG | 3 cut(s) | 951, 3615, 3666 |
| BclI | TGATCA | 2 cut(s) | 3337, 4506 |
| BcnI | CCSGG | 1 cut(s) | 3036 |
| BcoDI | GTCTC | 6 cut(s) | 290, 2645, 3408, 3781, 3803, 4500 |
| BfaI | CTAG | 8 cut(s) | 366, 1452, 2264, 2600, 3026, 3836, 3980, 4299 |
| BfmI | CTRYAG | 9 cut(s) | 747, 1341, 1896, 3521, 3804, 4376, 4520, 4604, 4763 |
| BfuAI | ACCTGC | 1 cut(s) | 4705 |
| BglII | AGATCT | 1 cut(s) | 2217 |
| BlnI | CCTAGG | 1 cut(s) | 4298 |
| Bme1390I | CCNGG | 4 cut(s) | 951, 3036, 3615, 3666 |
| Bme18I | GGWCC | 4 cut(s) | 2153, 2474, 3097, 3839 |
| BmeT110I | CYCGRG | 2 cut(s) | 3234, 3477 |
| BmgBI | CACGTC | 1 cut(s) | 129 |
| BmgT120I | GGNCC | 8 cut(s) | 2153, 2353, 2474, 3097, 3839, 4066, 4355, 4404 |
| BmiI | GGNNCC | 5 cut(s) | 2245, 3279, 3619, 3969, 4406 |
| BmrFI | CCNGG | 4 cut(s) | 951, 3036, 3615, 3666 |
| BmtI | GCTAGC | 1 cut(s) | 2267 |
| BpiI | GAAGAC | 6 cut(s) | 266, 401, 2614, 2903, 3023, 3494 |
| BpmI | CTGGAG | 7 cut(s) | 528, 867, 972, 1509, 2669, 3687, 3720 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2799, 3000 |
| BpuEI | CTTGAG | 4 cut(s) | 289, 3636, 4542, 4888 |
| BpuMI | CCSGG | 1 cut(s) | 3036 |
| Bsa29I | ATCGAT | 1 cut(s) | 2366 |
| BsaAI | YACGTR | 1 cut(s) | 1382 |
| BsaHI | GRCGYC | 1 cut(s) | 2900 |
| BsaI | GGTCTC | 2 cut(s) | 2645, 3803 |
| BsaJI | CCNNGG | 4 cut(s) | 2283, 2329, 3371, 4298 |
| BsaWI | WCCGGW | 1 cut(s) | 70 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 431, 2150, 3671, 4414, 4882 |
| Bse1I | ACTGG | 5 cut(s) | 541, 2926, 3595, 3769, 4347 |
| Bse21I | CCTNAGG | 2 cut(s) | 2349, 3149 |
| Bse3DI | GCAATG | 3 cut(s) | 3924, 4100, 4580 |
| BseBI | CCWGG | 3 cut(s) | 951, 3615, 3666 |
| BseCI | ATCGAT | 1 cut(s) | 2366 |
| BseDI | CCNNGG | 4 cut(s) | 2283, 2329, 3371, 4298 |
| BseGI | GGATG | 6 cut(s) | 2116, 2293, 3097, 3454, 4294, 4423 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 431, 2150, 3671, 4414, 4882 |
| BseMI | GCAATG | 3 cut(s) | 3924, 4100, 4580 |
| BseNI | ACTGG | 5 cut(s) | 541, 2926, 3595, 3769, 4347 |
| BseRI | GAGGAG | 1 cut(s) | 188 |
| BseSI | GKGCMC | 1 cut(s) | 3734 |
| BseYI | CCCAGC | 5 cut(s) | 2247, 2655, 3951, 4063, 4352 |
| BsgI | GTGCAG | 4 cut(s) | 1245, 1401, 2024, 2066 |
| Bsh1236I | CGCG | 1 cut(s) | 4854 |
| BshNI | GGYRCC | 1 cut(s) | 3277 |
| BshVI | ATCGAT | 1 cut(s) | 2366 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3734 |
| BsiHKCI | CYCGRG | 2 cut(s) | 3234, 3477 |
| BsiSI | CCGG | 2 cut(s) | 71, 3035 |
| BslFI | GGGAC | 5 cut(s) | 365, 2588, 2755, 4029, 4143 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 431, 2150, 3671, 4414, 4882 |
| BsmAI | GTCTC | 6 cut(s) | 290, 2645, 3408, 3781, 3803, 4500 |
| BsmBI | CGTCTC | 3 cut(s) | 290, 3408, 3781 |
| BsmFI | GGGAC | 5 cut(s) | 365, 2588, 2755, 4029, 4143 |
| BsmI | GAATGC | 2 cut(s) | 2629, 3571 |
| Bso31I | GGTCTC | 2 cut(s) | 2645, 3803 |
| BsoBI | CYCGRG | 2 cut(s) | 3234, 3477 |
| Bsp1286I | GDGCHC | 3 cut(s) | 3371, 3734, 3744 |
| Bsp1407I | TGTACA | 3 cut(s) | 679, 898, 3133 |
| Bsp19I | CCATGG | 1 cut(s) | 2283 |
| BspACI | CCGC | 9 cut(s) | 1826, 1889, 2927, 3709, 4043, 4046, 4203, 4257, 4852 |
| BspDI | ATCGAT | 1 cut(s) | 2366 |
| BspFNI | CGCG | 1 cut(s) | 4854 |
| BspHI | TCATGA | 1 cut(s) | 2515 |
| BspLI | GGNNCC | 5 cut(s) | 2245, 3279, 3619, 3969, 4406 |
| BspMAI | CTGCAG | 6 cut(s) | 751, 1345, 3525, 4380, 4608, 4767 |
| BspMI | ACCTGC | 1 cut(s) | 4705 |
| BspOI | GCTAGC | 1 cut(s) | 2267 |
| BspQI | GCTCTTC | 1 cut(s) | 1170 |
| BspT107I | GGYRCC | 1 cut(s) | 3277 |
| BspTNI | GGTCTC | 2 cut(s) | 2645, 3803 |
| BsrDI | GCAATG | 3 cut(s) | 3924, 4100, 4580 |
| BsrGI | TGTACA | 3 cut(s) | 679, 898, 3133 |
| BsrI | ACTGG | 5 cut(s) | 541, 2926, 3595, 3769, 4347 |
| BssECI | CCNNGG | 4 cut(s) | 2283, 2329, 3371, 4298 |
| BssNI | GRCGYC | 1 cut(s) | 2900 |
| BssSI | CACGAG | 2 cut(s) | 2688, 2858 |
| BssT1I | CCWWGG | 3 cut(s) | 2283, 2329, 4298 |
| Bst2BI | CACGAG | 2 cut(s) | 2688, 2858 |
| Bst2UI | CCWGG | 3 cut(s) | 951, 3615, 3666 |
| Bst6I | CTCTTC | 3 cut(s) | 1170, 1455, 2448 |
| BstACI | GRCGYC | 1 cut(s) | 2900 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1981, 2437, 2924, 4177 |
| BstAUI | TGTACA | 3 cut(s) | 679, 898, 3133 |
| BstBAI | YACGTR | 1 cut(s) | 1382 |
| BstC8I | GCNNGC | 6 cut(s) | 15, 39, 2265, 4257, 4587, 4808 |
| BstDSI | CCRYGG | 2 cut(s) | 2283, 3371 |
| BstF5I | GGATG | 6 cut(s) | 2116, 2293, 3097, 3454, 4294, 4423 |
| BstFNI | CGCG | 1 cut(s) | 4854 |
| BstHHI | GCGC | 3 cut(s) | 4083, 4182, 4856 |
| BstMAI | GTCTC | 6 cut(s) | 290, 2645, 3408, 3781, 3803, 4500 |
| BstNI | CCWGG | 3 cut(s) | 951, 3615, 3666 |
| BstNSI | RCATGY | 3 cut(s) | 1214, 1960, 2440 |
| BstSCI | CCNGG | 4 cut(s) | 949, 3034, 3613, 3664 |
| BstSFI | CTRYAG | 9 cut(s) | 747, 1341, 1896, 3521, 3804, 4376, 4520, 4604, 4763 |
| BstSLI | GKGCMC | 1 cut(s) | 3734 |
| BstUI | CGCG | 1 cut(s) | 4854 |
| BstV2I | GAAGAC | 6 cut(s) | 266, 401, 2614, 2903, 3023, 3494 |
| Bsu15I | ATCGAT | 1 cut(s) | 2366 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2349, 3149 |
| BsuTUI | ATCGAT | 1 cut(s) | 2366 |
| BtgI | CCRYGG | 2 cut(s) | 2283, 3371 |
| BtgZI | GCGATG | 2 cut(s) | 3561, 4200 |
| BtrI | CACGTC | 1 cut(s) | 129 |
| BtsCI | GGATG | 6 cut(s) | 2116, 2293, 3097, 3454, 4294, 4423 |
| BtsI | GCAGTG | 2 cut(s) | 1350, 4017 |
| BtsIMutI | CAGTG | 5 cut(s) | 1350, 1893, 2715, 3762, 4017 |
| BveI | ACCTGC | 1 cut(s) | 4705 |
| Cac8I | GCNNGC | 6 cut(s) | 15, 39, 2265, 4257, 4587, 4808 |
| CaiI | CAGNNNCTG | 7 cut(s) | 1981, 4060, 4063, 4174, 4177, 4603, 4771 |
| CciI | TCATGA | 1 cut(s) | 2515 |
| CfoI | GCGC | 3 cut(s) | 4083, 4182, 4856 |
| Cfr13I | GGNCC | 8 cut(s) | 2153, 2353, 2474, 3097, 3839, 4066, 4355, 4404 |
| ClaI | ATCGAT | 1 cut(s) | 2366 |
| CseI | GACGC | 1 cut(s) | 2908 |
| Csp6I | GTAC | 7 cut(s) | 680, 899, 1004, 1678, 2345, 3134, 4863 |
| CviQI | GTAC | 7 cut(s) | 680, 899, 1004, 1678, 2345, 3134, 4863 |
| DraI | TTTAAA | 2 cut(s) | 2307, 4728 |
| DraIII | CACNNNGTG | 1 cut(s) | 1627 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3795 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3795 |
| EaeI | YGGCCR | 2 cut(s) | 1890, 4204 |
| Eam1104I | CTCTTC | 3 cut(s) | 1170, 1455, 2448 |
| EarI | CTCTTC | 3 cut(s) | 1170, 1455, 2448 |
| Eco130I | CCWWGG | 3 cut(s) | 2283, 2329, 4298 |
| Eco147I | AGGCCT | 2 cut(s) | 4639, 4810 |
| Eco24I | GRGCYC | 2 cut(s) | 3371, 3744 |
| Eco31I | GGTCTC | 2 cut(s) | 2645, 3803 |
| Eco47I | GGWCC | 4 cut(s) | 2153, 2474, 3097, 3839 |
| Eco57I | CTGAAG | 7 cut(s) | 222, 2045, 2571, 2759, 3506, 3840, 4793 |
| Eco81I | CCTNAGG | 2 cut(s) | 2349, 3149 |
| Eco88I | CYCGRG | 2 cut(s) | 3234, 3477 |
| EcoO109I | RGGNCCY | 1 cut(s) | 4404 |
| EcoRII | CCWGG | 3 cut(s) | 949, 3613, 3664 |
| EcoT14I | CCWWGG | 3 cut(s) | 2283, 2329, 4298 |
| EcoT38I | GRGCYC | 2 cut(s) | 3371, 3744 |
| ErhI | CCWWGG | 3 cut(s) | 2283, 2329, 4298 |
| Esp3I | CGTCTC | 3 cut(s) | 290, 3408, 3781 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2544, 2576, 2805, 2837, 2865, 2897 |
| FaqI | GGGAC | 5 cut(s) | 365, 2588, 2755, 4029, 4143 |
| FauI | CCCGC | 1 cut(s) | 4264 |
| FauNDI | CATATG | 2 cut(s) | 1110, 4071 |
| FbaI | TGATCA | 2 cut(s) | 3337, 4506 |
| FblI | GTMKAC | 1 cut(s) | 106 |
| FokI | GGATG | 6 cut(s) | 2103, 2300, 3104, 3461, 4281, 4430 |
| FriOI | GRGCYC | 2 cut(s) | 3371, 3744 |
| FspBI | CTAG | 8 cut(s) | 366, 1452, 2264, 2600, 3026, 3836, 3980, 4299 |
| GlaI | GCGC | 3 cut(s) | 4082, 4181, 4855 |
| GsaI | CCCAGC | 5 cut(s) | 2251, 2659, 3955, 4067, 4356 |
| GsuI | CTGGAG | 7 cut(s) | 528, 867, 972, 1509, 2669, 3687, 3720 |
| HapII | CCGG | 2 cut(s) | 71, 3035 |
| HgaI | GACGC | 1 cut(s) | 2908 |
| HhaI | GCGC | 3 cut(s) | 4083, 4182, 4856 |
| Hin1I | GRCGYC | 1 cut(s) | 2900 |
| Hin6I | GCGC | 3 cut(s) | 4081, 4180, 4854 |
| HinP1I | GCGC | 3 cut(s) | 4081, 4180, 4854 |
| HincII | GTYRAC | 3 cut(s) | 198, 526, 3887 |
| HindII | GTYRAC | 3 cut(s) | 198, 526, 3887 |
| HindIII | AAGCTT | 2 cut(s) | 11, 3332 |
| HpaII | CCGG | 2 cut(s) | 71, 3035 |
| HphI | GGTGA | 9 cut(s) | 128, 365, 661, 1261, 1489, 1931, 2905, 3423, 4710 |
| Hpy166II | GTNNAC | 6 cut(s) | 107, 198, 526, 3041, 3732, 3887 |
| Hpy8I | GTNNAC | 6 cut(s) | 107, 198, 526, 3041, 3732, 3887 |
| HpyAV | CCTTC | 8 cut(s) | 707, 2086, 2546, 2707, 2831, 3059, 3121, 4480 |
| HpyCH4IV | ACGT | 5 cut(s) | 128, 1381, 1468, 1995, 3229 |
| HpySE526I | ACGT | 5 cut(s) | 128, 1381, 1468, 1995, 3229 |
| Hsp92I | GRCGYC | 1 cut(s) | 2900 |
| HspAI | GCGC | 3 cut(s) | 4081, 4180, 4854 |
| Ksp22I | TGATCA | 2 cut(s) | 3337, 4506 |
| LguI | GCTCTTC | 1 cut(s) | 1170 |
| LmnI | GCTCC | 6 cut(s) | 3068, 3205, 3295, 3617, 3862, 4705 |
| MaeI | CTAG | 8 cut(s) | 366, 1452, 2264, 2600, 3026, 3836, 3980, 4299 |
| MaeII | ACGT | 5 cut(s) | 128, 1381, 1468, 1995, 3229 |
| MfeI | CAATTG | 9 cut(s) | 168, 597, 1568, 1694, 3191, 3362, 3635, 4019, 4133 |
| MhlI | GDGCHC | 3 cut(s) | 3371, 3734, 3744 |
| MmeI | TCCRAC | 4 cut(s) | 365, 3652, 4395, 4629 |
| MroXI | GAANNNNTTC | 4 cut(s) | 834, 1770, 2820, 3825 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1247, 2042 |
| MspA1I | CMGCKG | 5 cut(s) | 2251, 3251, 3520, 4060, 4174 |
| MspI | CCGG | 2 cut(s) | 71, 3035 |
| MspR9I | CCNGG | 4 cut(s) | 951, 3036, 3615, 3666 |
| MunI | CAATTG | 9 cut(s) | 168, 597, 1568, 1694, 3191, 3362, 3635, 4019, 4133 |
| Mva1269I | GAATGC | 2 cut(s) | 2629, 3571 |
| MvaI | CCWGG | 3 cut(s) | 951, 3615, 3666 |
| MvnI | CGCG | 1 cut(s) | 4854 |
| NciI | CCSGG | 1 cut(s) | 3036 |
| NcoI | CCATGG | 1 cut(s) | 2283 |
| NdeI | CATATG | 2 cut(s) | 1110, 4071 |
| NheI | GCTAGC | 1 cut(s) | 2263 |
| NlaIV | GGNNCC | 5 cut(s) | 2245, 3279, 3619, 3969, 4406 |
| NmuCI | GTSAC | 7 cut(s) | 790, 1411, 2855, 2975, 3597, 3775, 4552 |
| NspI | RCATGY | 3 cut(s) | 1214, 1960, 2440 |
| PaeR7I | CTCGAG | 2 cut(s) | 3234, 3477 |
| PagI | TCATGA | 1 cut(s) | 2515 |
| PceI | AGGCCT | 2 cut(s) | 4639, 4810 |
| PciI | ACATGT | 2 cut(s) | 1210, 1956 |
| PciSI | GCTCTTC | 1 cut(s) | 1170 |
| PctI | GAATGC | 2 cut(s) | 2629, 3571 |
| PdmI | GAANNNNTTC | 4 cut(s) | 834, 1770, 2820, 3825 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2150 |
| Ppu21I | YACGTR | 1 cut(s) | 1382 |
| PscI | ACATGT | 2 cut(s) | 1210, 1956 |
| Psp1406I | AACGTT | 1 cut(s) | 1995 |
| Psp6I | CCWGG | 3 cut(s) | 949, 3613, 3664 |
| PspFI | CCCAGC | 5 cut(s) | 2247, 2655, 3951, 4063, 4352 |
| PspGI | CCWGG | 3 cut(s) | 949, 3613, 3664 |
| PspN4I | GGNNCC | 5 cut(s) | 2245, 3279, 3619, 3969, 4406 |
| PspPI | GGNCC | 8 cut(s) | 2153, 2353, 2474, 3097, 3839, 4066, 4355, 4404 |
| PspXI | VCTCGAGB | 1 cut(s) | 3234 |
| PstI | CTGCAG | 6 cut(s) | 751, 1345, 3525, 4380, 4608, 4767 |
| PstNI | CAGNNNCTG | 7 cut(s) | 1981, 4060, 4063, 4174, 4177, 4603, 4771 |
| PvuII | CAGCTG | 5 cut(s) | 2251, 3251, 3520, 4060, 4174 |
| RsaI | GTAC | 7 cut(s) | 681, 900, 1005, 1679, 2346, 3135, 4864 |
| RsaNI | GTAC | 7 cut(s) | 680, 899, 1004, 1678, 2345, 3134, 4863 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1247, 2042 |
| SapI | GCTCTTC | 1 cut(s) | 1170 |
| Sau96I | GGNCC | 8 cut(s) | 2153, 2353, 2474, 3097, 3839, 4066, 4355, 4404 |
| ScrFI | CCNGG | 4 cut(s) | 951, 3036, 3615, 3666 |
| SduI | GDGCHC | 3 cut(s) | 3371, 3734, 3744 |
| SfcI | CTRYAG | 9 cut(s) | 747, 1341, 1896, 3521, 3804, 4376, 4520, 4604, 4763 |
| Sfr274I | CTCGAG | 2 cut(s) | 3234, 3477 |
| SinI | GGWCC | 4 cut(s) | 2153, 2474, 3097, 3839 |
| SlaI | CTCGAG | 2 cut(s) | 3234, 3477 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1247, 2042 |
| SmlI | CTYRAG | 6 cut(s) | 268, 3234, 3477, 3651, 4557, 4867 |
| SmoI | CTYRAG | 6 cut(s) | 268, 3234, 3477, 3651, 4557, 4867 |
| SseBI | AGGCCT | 2 cut(s) | 4639, 4810 |
| SsiI | CCGC | 9 cut(s) | 1826, 1889, 2927, 3709, 4043, 4046, 4203, 4257, 4852 |
| SspI | AATATT | 1 cut(s) | 1366 |
| SspMI | CTAG | 8 cut(s) | 366, 1452, 2264, 2600, 3026, 3836, 3980, 4299 |
| StuI | AGGCCT | 2 cut(s) | 4639, 4810 |
| StyD4I | CCNGG | 4 cut(s) | 949, 3034, 3613, 3664 |
| StyI | CCWWGG | 3 cut(s) | 2283, 2329, 4298 |
| TaiI | ACGT | 5 cut(s) | 131, 1384, 1471, 1998, 3232 |
| TaqII | GACCGA | 1 cut(s) | 1764 |
| TatI | WGTACW | 4 cut(s) | 679, 898, 1003, 3133 |
| TauI | GCSGC | 5 cut(s) | 1892, 4045, 4048, 4206, 4854 |
| TscAI | CASTG | 5 cut(s) | 1350, 1900, 2715, 3769, 4017 |
| TseFI | GTSAC | 7 cut(s) | 790, 1411, 2855, 2975, 3597, 3775, 4552 |
| Tsp45I | GTSAC | 7 cut(s) | 790, 1411, 2855, 2975, 3597, 3775, 4552 |
| TspGWI | ACGGA | 1 cut(s) | 2578 |
| TspRI | CASTG | 5 cut(s) | 1350, 1900, 2715, 3769, 4017 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2150 |
| VneI | GTGCAC | 1 cut(s) | 3730 |
| VpaK11BI | GGWCC | 4 cut(s) | 2153, 2474, 3097, 3839 |
| XapI | RAATTY | 8 cut(s) | 218, 742, 764, 1047, 1931, 2171, 2416, 2490 |
| XbaI | TCTAGA | 1 cut(s) | 365 |
| XceI | RCATGY | 3 cut(s) | 1214, 1960, 2440 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 4797 |
| XhoI | CTCGAG | 2 cut(s) | 3234, 3477 |
| XmaJI | CCTAGG | 1 cut(s) | 4298 |
| XmiI | GTMKAC | 1 cut(s) | 106 |
| XmnI | GAANNNNTTC | 4 cut(s) | 834, 1770, 2820, 3825 |
| XspI | CTAG | 8 cut(s) | 366, 1452, 2264, 2600, 3026, 3836, 3980, 4299 |