Rw7G019660

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000827
Physical Location & Seq
Forward (+)
21885887 .. 21894469
8583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G019660.1

Sequence Viewer

Length: 4563 bp
ATGCCACGGACACAGTGTATTTCGTGCCCTGGGTCACCTAGAACACAAATGATAAACAAGCTTGCTGGTGCTGTGATGGAGAAGCTCGCATTTTCAGACCCCTCCAAAACACTCACACCAGATCAGAAGAATGAAATCAAACGACGTCTTTGTAGACTCTTACCTGCGTTTCACACACCCGATCATCCCACCTATGCCGTGATGATTCGTAGGGCAATTGAGGAGTTGAATGAGGAACAGGGGTCAACTGAAGAAGCAATATCAAAATATATTAGAGAGAAGTTTGACGGTTTGCCATTGGCTCATGCAAGTTTCTTGAGTCTTCACTTGAAGAAGCTAAATGAGAGGGGAGAAATTGTTTGTGTATCAAAAAATTGTTATATGCATCCAACTGATAAAGGTGATTCTCTTTCTAGAAGAAAGTGTGTCCCGAAACAAAAGAAGACTCGGAAGGGTTGGGGAAAAGGAAACTCAGCTAAAGGAAATGAACATAAAACATTAGCAGAAGAACAAGTTGAAGTGACTGAGAAACAGAGAAAGCAGAGGAAGCAAAGTCAAAAACCGCAGTATTGTAAGGCAGTTGACAACCAAACTGGATCTCCAGAGCAAGTCAATGGACAACAATGTCAAAGACAAATGGAAGAAATTGCTGCAATTGCTGAAAAGAAAAGTCAAGAACAAATTGAAGAAGATCAGCAGAGTAAGGTGATTGATGATAAAAAAGAATCTCCTGATGCACAGCAAGGAGAAGTAATTAAACAACAAATTCAAGGTATTGCAGTCATTGTTGTTCCCCGAAATTCCACGGAACAGATATATAAAGTCCCCGAAGAACAAGAAGTTGAAGTGACTGAACAACAGCAGCAGCACGGGCAGCAAAGTCAAGAACTGAGTCAAGAAGAACAGCATAGTATGGTAATTGACTGTCAAAATGGATCTCCAGATGAAGAAAATGTACAGCAAGATGAAGTGAATAGGCTGAAAAGTCAAAATCAAGTGCAATTACCTGGAGTGATAGTCGAAAAGCAGAACATTGAACAGATATATAAAGAAGATGAAGTACAAGTAGAAGTAACTGAACAACTGAGAGAAGATGGGCAGGAAATTCAAGATTCAATTCAAGCAGAACAGTGTAGTAAGATGATTGAAGATAAATATGGCTCTACAGATGCGCAGCAAGAGAGAGTGAATGGACATGAAAATCAGAAACATATGCAAGATGTTGCGTTGATTGTTGATAAGCAGAATGTTGAAGTCAAGAAGTATCAAGTGAATGAAGAGCAAGTTGAAGTGATTGAACAAAAGGCAGAAAATGTGAAGCAAAGTGCAGAACCAATACAGCACATAAAGGTGATTGATTGTCAAAATGGATCTTCAAAGCAACAAAATGAACAGAAAGATGAAGTGAATGGACACCAAAGTGAAAATCAAATGCAAGTAACTGCAGTGAATGATGTTGAAAAGTCTAATTTTTCAGAACAGATACGTAATGTGAATGAAGAAGAACAAGTTGAAGTGACTGCACAGAGAGAATATGGGCAGCAAAGTCAAGAAGAGCAACATAACAAGGTGATTGACTGTCAAAATGGATCTCCAGAGCAACAAAATAAACAGCAAGAATATGTGAATGAGGATCAATTGCAAGAAATCATTGTGAGTTGTGAAAAGCAGATTGACACAAAACTGAAACACAAAGTGGCTGATGAGCGTATTGAAGTAAGTATGGATAAAATAGTTGAAGAACAGTACCAAACTAAAGAACAATTGTGTGAAGTGATTGAACAACATAGTCAAGCTGTCAAAAGAGATATACAGTTACATGGAGAAGCAGTTGAAGCAATTCGGTCTGGACCAGAGGCACAGCAAAGTGATATGATTTCAGAACAAAATAGACTGCAAGACCAAATTGAATTAATAAGTATGCAGGAGTTATTGCCTAAGAAGCAAGAGAAAGATGCGGCTACTGTTGTCAATTCAAATGTTTCTATTGCAAGTCAGAAATTTTCCCACCATGTTTCGTCAAACTTGTCTGAGGTGCAGGGAAAGATGCAGAAGCTGCTGGAAAATAACATTAAGGTGCAGGAAAAGACACATAAGCTGCTGGAAAATAACATTAAGGTGCAGGAAAAGACACTTCAGGTTCAGGAAAAGTTGTTTGAGCTGTTGAAGGAGTTAGCAGATACCATTCGAAATCCTGTTATAGAAAAAAGATCAATGCCAATCATTGCTCCTTGTGGAGAGAGGGAATATATAGATTGTGGATTTCCAGCAAAACAGAAGCACCAACCTGAGATCTCAGCTCAAACAAAAGCATTGGGATCCCAGCTGAATGAAATGCTAGCATCTCTTGAACTACCCATGGACGCAGCAGAGTTATTTTTAAAGCAGGGAAAGCTATGCAACCTTGGTCAGCAACAAGTACCTAAGGGCCAGAACAAATCAATTAAGAATATGCCTGATGCTGAACAACCTCAACAACAGGAGATTGGAAATTCAGAATTGTTGCGGGAACTGCCAACAATGGAAGAAGAGAATGAAGAATTATCTGGACCTGTTAGAAAGAGAATTCGTTTAAGCATTGAAGCAAATCATGAGAAAGAAAAGCAACTGCAAGTGCATAATGCTGAAGGCCATCCTGATCTTCGTAGTCAAGAGAAGCCGTCTGTATCTGTGCTAGTCCCAAGTTTTCCAGATGTCTTCTTGCACTCGCCAAACTATGAGCAGGGGACCCAGCAACCAAAAGTTCAAAAGACAGAAAGACCTCATGAAATCAAATCGCTGTCAGTGGAGGGAGGAATTATTGCTCATGTATCCAGGACAAACCTTATAGAATCTTCTGTTGATTTGCTTCAGGAAGAACAGGAGATTGTTCCTGAGCTAACATATCAAGAAAACCTTCAAGGGCAAGAACAAGAAATGCAGTCATTTAGTCACAAGAAGCATCAACAAGCTATTCTTTCTGATGTGGTGAAGACGCCTGATTTCCTATTAGCAACTGATGAAGACCATCAACCAGAAAATGTGATTAAGGAGAAGGCTGTACAGTCAAGTCACCTGAGTCTTGAATTGACAGCAAGTGAGCAATCCAGTCAAAGACAATTGGAGAAACAGCAGCAACAACCGCAGAGGCAGTTACGTCCTCGAGGTAAAAAGTCAGCTGAGTCTGATTGTGGAGTGGCAACGGCACCTGAATGCCAGCAGGAGCAGCAGCTCAGATATCCAATGCAGGAAAGAATGAAGCTTGATCATAAACCAGCAGAGCAGAGTCAATTGTGCCCACGGTGCCAGAGGCACTCTGAGTCTGAACCGTCTCTCACTACATCTATGGTTGAATTATCACCAAGAAAAAGTCAGGATACTGACAGTCAAACAGAGGAAAAGACTCCAGAGCTGAAGACATCAGCAGAGGAAACAGGCCAAAGACAGGTCCAGCAGAGGCAGCTTCGAACAAGAAGCAAAAACCTGTCTGAATTCAAGCAAACATCACTTTCAAATACTGGAATGTCACAAGTGGATAAGCCAGGAGCCGAAGATTTGTCTCAACTGAAAAGGCAGCCTCAAGTGGAAAAGCCTGGAGTTGGAGATCCATCTCAATCGAAGAAGAAACAAGTTAACCGCTTAAATAAGCGAAAGTGGTGCACTCCAGAGCCCACAACAATGCCCAACGCCATTGGTGCAATCGTCACTTACCAGAGACGGTCAAGTCAAACTATAGAGCCCAACCCTGAAGCATTTCAGGATCTAGGACCAACACTCGCAGACCATTTGGAGCAAAAAGAGAATCATCATGGTCAACGAAAGAAGCTCAAATCAGCAAAAGAAAGTCCTGATGAGTTGGCTCTCACTTCCCAGCATCTTGTGGTGGATCCTCACATTCTAGTAAAGCCTCCAGTGCTCAATCCAGCTGCAGTGGGACAATTGCCTCAAACAACAAAAGAGCTGCCGCAGAAACAGCAGCTGCTGCACCATATGAAACTGCGCTCGTGCAGCCAAGCTGCATCGCAATCTGAACCTGATGTTTTGATAGTGGGACTATTGCCTCAAACAACAAAAGAGCTGCCACAGAAACAGCTGCTGCCCCATATGAAACTACACTCAGGCAGCCAAGCTGCATCGCAATCTGAACCCGATGTTTCGATGATTGATACGTTGCCCGCAGAGCACCATTCTGAGCAGCCACAAGAACAGAAGCATCCTAAGTGGCCACAGAAGCAAAGAGGGAGGACTCCTAAACCAAAACTGGATAGAGCTGGGCCTGTTAAGCATCAACAGCTGCAGAAACAACCAAAAAGACGAGGGAGGCCCCCTAAGTTGGATGTAAATACTATATCAGGGAGAAAATTGATCTCAAAGAACAAACAGAAGCAACCAAAGAGTCCAGGGAAGGCAAAATCTCGAAAAGTGATCAAAGGAAAACTACAGAGTCAAGTGAGGGGAAAGCCTCAAAAAGTGACTCAAGGAACACCAAAGAGTCAAGTGAGGGGAAGGCTTCAAAAAATGTCTGAAGAAACAGTACAGAGTCAAGTTAGGGACAGGGCTCGAGAAGTGACTGAAGGAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

1520

Amino Acids

172.77

Weight (kDa)

6.27

Isoelectric Point (pI)

65.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 62 - 123 1.6e-10 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 624, 3702
AatII GACGTC 1 cut(s) 148
AbsI CCTCGAGG 1 cut(s) 3141
Acc16I TGCGCA 1 cut(s) 1173
Acc36I ACCTGC 1 cut(s) 172
AccB1I GGYRCC 2 cut(s) 3184, 3282
AccI GTMKAC 1 cut(s) 154
AciI CCGC 7 cut(s) 563, 1958, 2506, 3122, 3616, 3944, 4155
AcoI YGGCCR 1 cut(s) 4202
AcsI RAATTY 7 cut(s) 765, 799, 1104, 2000, 2491, 2565, 3470
AcuI CTGAAG 7 cut(s) 270, 2120, 2646, 2834, 3413, 3747, 4524
AcyI GRCGYC 2 cut(s) 145, 2975
AdeI CACNNNGTG 1 cut(s) 1696
AfaI GTAC 6 cut(s) 957, 1062, 1748, 2421, 3042, 4515
AfiI CCNNNNNNNGG 3 cut(s) 3424, 3578, 4312
AjnI CCWGG 6 cut(s) 28, 1006, 2813, 3520, 3571, 4378
AleI CACNNNNGTG 1 cut(s) 1419
Alw21I GWGCWC 3 cut(s) 3641, 3897, 4164
Alw26I GTCTC 3 cut(s) 3315, 3543, 3688
Alw44I GTGCAC 1 cut(s) 3637
AlwNI CAGNNNCTG 4 cut(s) 2056, 3958, 3961, 4075
Ama87I CYCGRG 2 cut(s) 3141, 4539
AoxI GGCC 6 cut(s) 2428, 2629, 3415, 4202, 4253, 4301
ApaLI GTGCAC 1 cut(s) 3637
ApoI RAATTY 7 cut(s) 765, 799, 1104, 2000, 2491, 2565, 3470
AseI ATTAAT 1 cut(s) 1913
Asp700I GAANNNNTTC 3 cut(s) 1839, 2895, 3732
AspLEI GCGC 2 cut(s) 1174, 3981
AspS9I GGNCC 8 cut(s) 1850, 2428, 2549, 2727, 3427, 3746, 4253, 4302
AsuHPI GGTGA 8 cut(s) 27, 413, 718, 1363, 1582, 2980, 3044, 3330
AsuII TTCGAA 2 cut(s) 2188, 3445
AsuNHI GCTAGC 1 cut(s) 2338
AvaI CYCGRG 2 cut(s) 3141, 4539
AvaII GGWCC 5 cut(s) 1850, 2549, 2727, 3427, 3746
AxyI CCTNAGG 1 cut(s) 2424
BaeGI GKGCMC 3 cut(s) 29, 3278, 3641
BalI TGGCCA 1 cut(s) 4204
BamHI GGATCC 2 cut(s) 2318, 3865
BanI GGYRCC 2 cut(s) 3184, 3282
BanII GRGCYC 3 cut(s) 3651, 3720, 4540
BarI GAAGNNNNNNTAC 6 cut(s) 939, 971, 1044, 1076, 4497, 4529
BauI CACGAG 1 cut(s) 3982
BbsI GAAGAC 6 cut(s) 314, 449, 2689, 2978, 3009, 3401
Bbv12I GWGCWC 3 cut(s) 3641, 3897, 4164
BccI CCATC 5 cut(s) 70, 1088, 2640, 3015, 3595
BceAI ACGGC 3 cut(s) 182, 2644, 3198
BcgI CGANNNNNNTGC 2 cut(s) 3618, 3652
BciT130I CCWGG 6 cut(s) 30, 1008, 2815, 3522, 3573, 4380
BciVI GTATCC 2 cut(s) 2821, 3349
BclI TGATCA 2 cut(s) 3244, 4404
BcoDI GTCTC 3 cut(s) 3315, 3543, 3688
BfaI CTAG 6 cut(s) 39, 414, 2339, 2675, 3743, 3878
BfmI CTRYAG 6 cut(s) 1164, 1443, 3711, 3906, 4274, 4418
BfuAI ACCTGC 1 cut(s) 172
BfuI GTATCC 2 cut(s) 2821, 3349
BglII AGATCT 1 cut(s) 2292
Bme1390I CCNGG 6 cut(s) 30, 1008, 2815, 3522, 3573, 4380
Bme18I GGWCC 5 cut(s) 1850, 2549, 2727, 3427, 3746
BmeT110I CYCGRG 2 cut(s) 3141, 4539
BmgT120I GGNCC 8 cut(s) 1850, 2428, 2549, 2727, 3427, 3746, 4253, 4302
BmiI GGNNCC 9 cut(s) 2320, 2728, 2729, 3186, 3284, 3526, 3867, 4304, 4558
BmrFI CCNGG 6 cut(s) 30, 1008, 2815, 3522, 3573, 4380
BmtI GCTAGC 1 cut(s) 2342
BpiI GAAGAC 6 cut(s) 314, 449, 2689, 2978, 3009, 3401
BpmI CTGGAG 8 cut(s) 585, 924, 1029, 1578, 3369, 3594, 3627, 3873
Bpu10I CCTNAGC 1 cut(s) 2874
Bpu14I TTCGAA 2 cut(s) 2188, 3445
BpuEI CTTGAG 3 cut(s) 337, 3543, 4440
BsaAI YACGTR 1 cut(s) 1487
BsaHI GRCGYC 2 cut(s) 145, 2975
BsaJI CCNNGG 8 cut(s) 5, 28, 29, 804, 2358, 2404, 3278, 4379
BsaXI ACNNNNNCTCC 8 cut(s) 342, 372, 583, 613, 1002, 1032, 1815, 1845
Bsc4I CCNNNNNNNGG 3 cut(s) 3424, 3578, 4312
Bse1I ACTGG 5 cut(s) 598, 3087, 3502, 3890, 4245
Bse21I CCTNAGG 1 cut(s) 2424
Bse3DI GCAATG 1 cut(s) 2223
BseBI CCWGG 6 cut(s) 30, 1008, 2815, 3522, 3573, 4380
BseDI CCNNGG 8 cut(s) 5, 28, 29, 804, 2358, 2404, 3278, 4379
BseGI GGATG 5 cut(s) 184, 385, 2632, 4192, 4321
BseLI CCNNNNNNNGG 3 cut(s) 3424, 3578, 4312
BseMI GCAATG 1 cut(s) 2223
BseNI ACTGG 5 cut(s) 598, 3087, 3502, 3890, 4245
BseRI GAGGAG 1 cut(s) 236
BseSI GKGCMC 3 cut(s) 29, 3278, 3641
BseYI CCCAGC 4 cut(s) 2322, 2730, 3849, 4250
BsgI GTGCAG 7 cut(s) 1347, 1506, 2057, 2099, 2141, 3947, 4006
BshFI GGCC 6 cut(s) 2430, 2631, 3417, 4204, 4255, 4303
BshNI GGYRCC 2 cut(s) 3184, 3282
BsiHKAI GWGCWC 3 cut(s) 3641, 3897, 4164
BsiHKCI CYCGRG 2 cut(s) 3141, 4539
BslFI GGGAC 7 cut(s) 413, 809, 2663, 2740, 3927, 4044, 4544
BslI CCNNNNNNNGG 3 cut(s) 3424, 3578, 4312
BsmAI GTCTC 3 cut(s) 3315, 3543, 3688
BsmBI CGTCTC 2 cut(s) 3315, 3688
BsmFI GGGAC 7 cut(s) 413, 809, 2663, 2740, 3927, 4044, 4544
BsmI GAATGC 1 cut(s) 3197
BsnI GGCC 6 cut(s) 2430, 2631, 3417, 4204, 4255, 4303
BsoBI CYCGRG 2 cut(s) 3141, 4539
Bsp119I TTCGAA 2 cut(s) 2188, 3445
Bsp1286I GDGCHC 8 cut(s) 29, 3278, 3641, 3651, 3720, 3897, 4164, 4540
Bsp1407I TGTACA 2 cut(s) 955, 3040
Bsp19I CCATGG 1 cut(s) 2358
BspACI CCGC 7 cut(s) 563, 1958, 2506, 3122, 3616, 3944, 4155
BspANI GGCC 6 cut(s) 2430, 2631, 3417, 4204, 4255, 4303
BspHI TCATGA 2 cut(s) 2590, 2764
BspLI GGNNCC 9 cut(s) 2320, 2728, 2729, 3186, 3284, 3526, 3867, 4304, 4558
BspMAI CTGCAG 3 cut(s) 1447, 3910, 4278
BspMI ACCTGC 1 cut(s) 172
BspOI GCTAGC 1 cut(s) 2342
BspQI GCTCTTC 2 cut(s) 1272, 1548
BspT104I TTCGAA 2 cut(s) 2188, 3445
BspT107I GGYRCC 2 cut(s) 3184, 3282
BsrDI GCAATG 1 cut(s) 2223
BsrGI TGTACA 2 cut(s) 955, 3040
BsrI ACTGG 5 cut(s) 598, 3087, 3502, 3890, 4245
BssECI CCNNGG 8 cut(s) 5, 28, 29, 804, 2358, 2404, 3278, 4379
BssNI GRCGYC 2 cut(s) 145, 2975
BssSI CACGAG 1 cut(s) 3982
BssT1I CCWWGG 2 cut(s) 2358, 2404
Bst2BI CACGAG 1 cut(s) 3982
Bst2UI CCWGG 6 cut(s) 30, 1008, 2815, 3522, 3573, 4380
Bst6I CTCTTC 3 cut(s) 1272, 1548, 2523
BstACI GRCGYC 2 cut(s) 145, 2975
BstAPI GCANNNNNTGC 2 cut(s) 2056, 3961
BstAUI TGTACA 2 cut(s) 955, 3040
BstBAI YACGTR 1 cut(s) 1487
BstBI TTCGAA 2 cut(s) 2188, 3445
BstC8I GCNNGC 5 cut(s) 63, 87, 2340, 3197, 4155
BstDSI CCRYGG 4 cut(s) 5, 804, 2358, 3278
BstEII GGTNACC 1 cut(s) 33
BstF5I GGATG 5 cut(s) 184, 385, 2632, 4192, 4321
BstHHI GCGC 2 cut(s) 1174, 3981
BstMAI GTCTC 3 cut(s) 3315, 3543, 3688
BstNI CCWGG 6 cut(s) 30, 1008, 2815, 3522, 3573, 4380
BstPI GGTNACC 1 cut(s) 33
BstSCI CCNGG 6 cut(s) 28, 1006, 2813, 3520, 3571, 4378
BstSFI CTRYAG 6 cut(s) 1164, 1443, 3711, 3906, 4274, 4418
BstSLI GKGCMC 3 cut(s) 29, 3278, 3641
BstSNI TACGTA 1 cut(s) 1487
BstV2I GAAGAC 6 cut(s) 314, 449, 2689, 2978, 3009, 3401
BstX2I RGATCY 9 cut(s) 596, 935, 1370, 1589, 2292, 2318, 3583, 3739, 3865
BstYI RGATCY 9 cut(s) 596, 935, 1370, 1589, 2292, 2318, 3583, 3739, 3865
Bsu36I CCTNAGG 1 cut(s) 2424
BsuI GTATCC 2 cut(s) 2821, 3349
BsuRI GGCC 6 cut(s) 2430, 2631, 3417, 4204, 4255, 4303
BtgI CCRYGG 4 cut(s) 5, 804, 2358, 3278
BtgZI GCGATG 2 cut(s) 3984, 4098
BtsCI GGATG 5 cut(s) 184, 385, 2632, 4192, 4321
BtsI GCAGTG 2 cut(s) 1452, 3915
BtsIMutI CAGTG 6 cut(s) 20, 1136, 1452, 2790, 3897, 3915
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 5 cut(s) 63, 87, 2340, 3197, 4155
CaiI CAGNNNCTG 4 cut(s) 2056, 3958, 3961, 4075
CciI TCATGA 2 cut(s) 2590, 2764
CfoI GCGC 2 cut(s) 1174, 3981
Cfr13I GGNCC 8 cut(s) 1850, 2428, 2549, 2727, 3427, 3746, 4253, 4302
CseI GACGC 2 cut(s) 2372, 2983
Csp6I GTAC 6 cut(s) 956, 1061, 1747, 2420, 3041, 4514
CviAII CATG 9 cut(s) 305, 1196, 1820, 2012, 2359, 2591, 2765, 2807, 3788
CviQI GTAC 6 cut(s) 956, 1061, 1747, 2420, 3041, 4514
DraI TTTAAA 1 cut(s) 2382
DraIII CACNNNGTG 1 cut(s) 1696
DrdI GACNNNNNNGTC 2 cut(s) 624, 3702
DseDI GACNNNNNNGTC 2 cut(s) 624, 3702
EaeI YGGCCR 1 cut(s) 4202
Eam1104I CTCTTC 3 cut(s) 1272, 1548, 2523
EarI CTCTTC 3 cut(s) 1272, 1548, 2523
Eco105I TACGTA 1 cut(s) 1487
Eco130I CCWWGG 2 cut(s) 2358, 2404
Eco24I GRGCYC 3 cut(s) 3651, 3720, 4540
Eco32I GATATC 1 cut(s) 3218
Eco47I GGWCC 5 cut(s) 1850, 2549, 2727, 3427, 3746
Eco57I CTGAAG 7 cut(s) 270, 2120, 2646, 2834, 3413, 3747, 4524
Eco81I CCTNAGG 1 cut(s) 2424
Eco88I CYCGRG 2 cut(s) 3141, 4539
Eco91I GGTNACC 1 cut(s) 33
EcoO109I RGGNCCY 2 cut(s) 2727, 4302
EcoO65I GGTNACC 1 cut(s) 33
EcoRI GAATTC 2 cut(s) 2565, 3470
EcoRII CCWGG 6 cut(s) 28, 1006, 2813, 3520, 3571, 4378
EcoRV GATATC 1 cut(s) 3218
EcoT14I CCWWGG 2 cut(s) 2358, 2404
EcoT22I ATGCAT 1 cut(s) 387
EcoT38I GRGCYC 3 cut(s) 3651, 3720, 4540
ErhI CCWWGG 2 cut(s) 2358, 2404
Esp3I CGTCTC 2 cut(s) 3315, 3688
FaeI CATG 9 cut(s) 308, 1199, 1823, 2015, 2362, 2594, 2768, 2810, 3791
FalI AAGNNNNNCTT 4 cut(s) 2880, 2912, 2940, 2972
FaqI GGGAC 7 cut(s) 413, 809, 2663, 2740, 3927, 4044, 4544
FatI CATG 9 cut(s) 304, 1195, 1819, 2011, 2358, 2590, 2764, 2806, 3787
FauI CCCGC 2 cut(s) 2499, 4162
FauNDI CATATG 3 cut(s) 1212, 3969, 4083
FbaI TGATCA 2 cut(s) 3244, 4404
FblI GTMKAC 1 cut(s) 154
FokI GGATG 5 cut(s) 171, 372, 2619, 4179, 4328
FriOI GRGCYC 3 cut(s) 3651, 3720, 4540
FspBI CTAG 6 cut(s) 39, 414, 2339, 2675, 3743, 3878
FspI TGCGCA 1 cut(s) 1173
GlaI GCGC 2 cut(s) 1173, 3980
GsaI CCCAGC 4 cut(s) 2326, 2734, 3853, 4254
GsuI CTGGAG 8 cut(s) 585, 924, 1029, 1578, 3369, 3594, 3627, 3873
HaeIII GGCC 6 cut(s) 2430, 2631, 3417, 4204, 4255, 4303
HgaI GACGC 2 cut(s) 2372, 2983
HhaI GCGC 2 cut(s) 1174, 3981
Hin1I GRCGYC 2 cut(s) 145, 2975
Hin1II CATG 9 cut(s) 308, 1199, 1823, 2015, 2362, 2594, 2768, 2810, 3791
Hin6I GCGC 2 cut(s) 1172, 3979
HinP1I GCGC 2 cut(s) 1172, 3979
HincII GTYRAC 4 cut(s) 246, 583, 3613, 3794
HindII GTYRAC 4 cut(s) 246, 583, 3613, 3794
HindIII AAGCTT 2 cut(s) 59, 3239
HpaI GTTAAC 1 cut(s) 3613
HphI GGTGA 8 cut(s) 27, 413, 718, 1363, 1582, 2980, 3044, 3330
Hpy166II GTNNAC 6 cut(s) 155, 246, 583, 3613, 3639, 3794
Hpy8I GTNNAC 6 cut(s) 155, 246, 583, 3613, 3639, 3794
Hpy99I CGWCG 1 cut(s) 147
HpyAV CCTTC 8 cut(s) 445, 2161, 2621, 2906, 3028, 4378, 4479, 4547
HpyCH4IV ACGT 4 cut(s) 145, 1486, 3136, 4148
HpySE526I ACGT 4 cut(s) 145, 1486, 3136, 4148
Hsp92I GRCGYC 2 cut(s) 145, 2975
Hsp92II CATG 9 cut(s) 308, 1199, 1823, 2015, 2362, 2594, 2768, 2810, 3791
HspAI GCGC 2 cut(s) 1172, 3979
KflI GGGWCCC 1 cut(s) 2727
Ksp22I TGATCA 2 cut(s) 3244, 4404
KspAI GTTAAC 1 cut(s) 3613
LguI GCTCTTC 2 cut(s) 1272, 1548
LmnI GCTCC 4 cut(s) 2233, 3202, 3524, 3769
MaeI CTAG 6 cut(s) 39, 414, 2339, 2675, 3743, 3878
MaeII ACGT 4 cut(s) 145, 1486, 3136, 4148
MfeI CAATTG 7 cut(s) 216, 654, 1637, 1763, 3098, 3269, 3917
MflI RGATCY 9 cut(s) 596, 935, 1370, 1589, 2292, 2318, 3583, 3739, 3865
MhlI GDGCHC 8 cut(s) 29, 3278, 3641, 3651, 3720, 3897, 4164, 4540
MlsI TGGCCA 1 cut(s) 4204
MluNI TGGCCA 1 cut(s) 4204
MmeI TCCRAC 3 cut(s) 413, 3559, 4293
Mox20I TGGCCA 1 cut(s) 4204
Mph1103I ATGCAT 1 cut(s) 387
MroXI GAANNNNTTC 3 cut(s) 1839, 2895, 3732
MscI TGGCCA 1 cut(s) 4204
MslI CAYNNNNRTG 6 cut(s) 1349, 1419, 2075, 2117, 3190, 3656
Msp20I TGGCCA 1 cut(s) 4204
MspA1I CMGCKG 6 cut(s) 2326, 3158, 3905, 3958, 4072, 4273
MspR9I CCNGG 6 cut(s) 30, 1008, 2815, 3522, 3573, 4380
MunI CAATTG 7 cut(s) 216, 654, 1637, 1763, 3098, 3269, 3917
Mva1269I GAATGC 1 cut(s) 3197
MvaI CCWGG 6 cut(s) 30, 1008, 2815, 3522, 3573, 4380
NcoI CCATGG 1 cut(s) 2358
NdeI CATATG 3 cut(s) 1212, 3969, 4083
NheI GCTAGC 1 cut(s) 2338
NlaIII CATG 9 cut(s) 308, 1199, 1823, 2015, 2362, 2594, 2768, 2810, 3791
NlaIV GGNNCC 9 cut(s) 2320, 2728, 2729, 3186, 3284, 3526, 3867, 4304, 4558
NsbI TGCGCA 1 cut(s) 1173
NsiI ATGCAT 1 cut(s) 387
NspV TTCGAA 2 cut(s) 2188, 3445
OliI CACNNNNGTG 1 cut(s) 1419
PaeR7I CTCGAG 2 cut(s) 3141, 4539
PagI TCATGA 2 cut(s) 2590, 2764
PasI CCCWGGG 1 cut(s) 29
PciSI GCTCTTC 2 cut(s) 1272, 1548
PctI GAATGC 1 cut(s) 3197
PdmI GAANNNNTTC 3 cut(s) 1839, 2895, 3732
PfeI GAWTC 6 cut(s) 205, 404, 725, 1112, 2831, 3781
PfoI TCCNGGA 1 cut(s) 2813
Ppu21I YACGTR 1 cut(s) 1487
PpuMI RGGWCCY 1 cut(s) 2727
PshBI ATTAAT 1 cut(s) 1913
Psp5II RGGWCCY 1 cut(s) 2727
Psp6I CCWGG 6 cut(s) 28, 1006, 2813, 3520, 3571, 4378
PspEI GGTNACC 1 cut(s) 33
PspFI CCCAGC 4 cut(s) 2322, 2730, 3849, 4250
PspGI CCWGG 6 cut(s) 28, 1006, 2813, 3520, 3571, 4378
PspN4I GGNNCC 9 cut(s) 2320, 2728, 2729, 3186, 3284, 3526, 3867, 4304, 4558
PspPI GGNCC 8 cut(s) 1850, 2428, 2549, 2727, 3427, 3746, 4253, 4302
PspPPI RGGWCCY 1 cut(s) 2727
PspXI VCTCGAGB 1 cut(s) 3141
PstI CTGCAG 3 cut(s) 1447, 3910, 4278
PstNI CAGNNNCTG 4 cut(s) 2056, 3958, 3961, 4075
PsuI RGATCY 9 cut(s) 596, 935, 1370, 1589, 2292, 2318, 3583, 3739, 3865
PvuII CAGCTG 6 cut(s) 2326, 3158, 3905, 3958, 4072, 4273
RsaI GTAC 6 cut(s) 957, 1062, 1748, 2421, 3042, 4515
RsaNI GTAC 6 cut(s) 956, 1061, 1747, 2420, 3041, 4514
RseI CAYNNNNRTG 6 cut(s) 1349, 1419, 2075, 2117, 3190, 3656
SapI GCTCTTC 2 cut(s) 1272, 1548
Sau96I GGNCC 8 cut(s) 1850, 2428, 2549, 2727, 3427, 3746, 4253, 4302
ScrFI CCNGG 6 cut(s) 30, 1008, 2815, 3522, 3573, 4380
SduI GDGCHC 8 cut(s) 29, 3278, 3641, 3651, 3720, 3897, 4164, 4540
SfcI CTRYAG 6 cut(s) 1164, 1443, 3711, 3906, 4274, 4418
Sfr274I CTCGAG 2 cut(s) 3141, 4539
SfuI TTCGAA 2 cut(s) 2188, 3445
SinI GGWCC 5 cut(s) 1850, 2549, 2727, 3427, 3746
SlaI CTCGAG 2 cut(s) 3141, 4539
SmiMI CAYNNNNRTG 6 cut(s) 1349, 1419, 2075, 2117, 3190, 3656
SmlI CTYRAG 5 cut(s) 316, 3141, 3558, 4455, 4539
SmoI CTYRAG 5 cut(s) 316, 3141, 3558, 4455, 4539
SnaBI TACGTA 1 cut(s) 1487
SsiI CCGC 7 cut(s) 563, 1958, 2506, 3122, 3616, 3944, 4155
SspMI CTAG 6 cut(s) 39, 414, 2339, 2675, 3743, 3878
StyD4I CCNGG 6 cut(s) 28, 1006, 2813, 3520, 3571, 4378
StyI CCWWGG 2 cut(s) 2358, 2404
TaiI ACGT 4 cut(s) 148, 1489, 3139, 4151
TaqI TCGA 8 cut(s) 1020, 2188, 3142, 3445, 3596, 4136, 4396, 4540
TaqII GACCGA 1 cut(s) 1833
TatI WGTACW 4 cut(s) 955, 1060, 3040, 4513
TauI GCSGC 2 cut(s) 1961, 3946
TfiI GAWTC 6 cut(s) 205, 404, 725, 1112, 2831, 3781
TscAI CASTG 6 cut(s) 20, 1136, 1452, 2790, 3897, 3915
TspGWI ACGGA 2 cut(s) 22, 821
TspRI CASTG 6 cut(s) 20, 1136, 1452, 2790, 3897, 3915
VneI GTGCAC 1 cut(s) 3637
VpaK11BI GGWCC 5 cut(s) 1850, 2549, 2727, 3427, 3746
VspI ATTAAT 1 cut(s) 1913
XapI RAATTY 7 cut(s) 765, 799, 1104, 2000, 2491, 2565, 3470
XbaI TCTAGA 1 cut(s) 413
XhoI CTCGAG 2 cut(s) 3141, 4539
XmiI GTMKAC 1 cut(s) 154
XmnI GAANNNNTTC 3 cut(s) 1839, 2895, 3732
XspI CTAG 6 cut(s) 39, 414, 2339, 2675, 3743, 3878
ZraI GACGTC 1 cut(s) 146
Zsp2I ATGCAT 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.