Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000827

Physical Location & Seq

Genomic Coordinates Forward (+)

23326257 .. 23327735

Gene Structure 1479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG234300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCGGCGAGTTCCGCAAGATTTTCATCTGCTGGGGAAGAAAGAAATGGAGAAGGAAGAGGAGTTAAAGGAGACCCAGATCATACACAAATGATAAACAAGCTTGCTGGTGCTGTGATGGAGAAACTCTTACCTGTGTTTCACACGCCCGATCACCCCACCTATGCCGTGATGATACGCAGGGCAATTGAGGAGTTGAATGAGGAACGGGGGTCAACTGAAGAAGCAATATCAAAATTTATTAGAGAGAAGTTTGACGGTTTGCCATTGGCTCATGCAAGTTTCTTGAGTCTTCACTTGAAGAAGCTAAACGAGAGGGGAGAAATTGTTTGTGTATCAAAAAATTGTTATATGCTTCCAACTGATAAAGGTGATTCTCTTTCTAGAAGAAAGCGTGTCCCGAAACAAAAGAAGACTCGGAAGGGTTGGGGAAAAAGAAAATCAGCTAAAGGAAAAGAACATAAAACATTAGCAGAAGAACAAGTTGAAGTGACTGAGAAACAGAGAAAGCAGGGGAAGCAAAGTCAAAAACCACAGTATTGTAAGGCAGTTGACAACCAAACTGGAGCTCCAGAGCAAGTCAATGGACAACAATGTCAAAGAAAAATGGAAGAAATTGCTGCAATTGCTGAAAAGAAAAGAACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

216

Amino Acids

24.31

Weight (kDa)

9.67

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	52 - 113	5.2e-11	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08780
fragaria_vesca	FvH4_5g27971
malus_domestica	MD06G1045800.v1.1
prunus_persica	Prupe.5G053600_v2.0.a1 Prupe.5G053600_v2.0.a1
pyrus_communis	pycom06g03880
rosa_chinensis	RchiOBHm_Chr7g0206261 RchiOBHm_Chr7g0206321 RchiOBHm_Chr7g0206331
rosa_laevigata	RLG00000003320 RLG00000003321 RLG00000003322 RLG00000003323 RLG00000003332 RLG00000003335
rosa_multiflora	Rmu_co8193150.1_g000001 Rmu_co8257597.1_g000001 Rmu_sc0000076.1_g000010 Rmu_sc0000076.1_g000011 Rmu_sc0004084.1_g000032 Rmu_sc0004084.1_g000049 Rmu_sc0005065.1_g000013 Rmu_sc0005065.1_g000014 Rmu_sc0006841.1_g000008 Rmu_sc0006841.1_g000010 Rmu_sc0006841.1_g000011 Rmu_sc0007739.1_g000013 Rmu_sc0007739.1_g000014
rosa_roxburghii	Rroxscaffold_3G00251630 Rroxscaffold_3G00251640 Rroxscaffold_3G00251710 Rroxscaffold_3G00251720 Rroxscaffold_3G00251730 Rroxscaffold_3G00251740 Rroxscaffold_3G00251800
rosa_rugosa	Rorug07G0096200
rosa_samantha	Rh7AG226900 Rh7AG227000 Rh7AG227100 Rh7AG227200 Rh7AG228200 Rh7AG228300 Rh7BG223200 Rh7BG223300 Rh7BG224500 Rh7BG224600 Rh7CG241200 Rh7CG241300 Rh7CG241400 Rh7CG241500 Rh7CG241600 Rh7CG242800 Rh7DG234300 Rh7DG234400 Rh7DG234500 Rh7DG234600 Rh7DG234700 Rh7DG234800 Rh7DG235400 Rh7DG235500 Rh7DG235600
rosa_wichuraiana	Rw7G019490 Rw7G019520 Rw7G019560 Rw7G019600 Rw7G019610 Rw7G019660 Rw7G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	594
AciI	CCGC	2 cut(s)	5, 15
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	240
AgsI	TTSAA	3 cut(s)	199, 301, 488
AluBI	AGCT	4 cut(s)	103, 307, 446, 569
AluI	AGCT	4 cut(s)	103, 307, 446, 569
Alw21I	GWGCWC	1 cut(s)	571
Alw26I	GTCTC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	620
ApoI	RAATTY	1 cut(s)	236
AsuHPI	GGTGA	2 cut(s)	146, 383
BanII	GRGCYC	1 cut(s)	571
BbsI	GAAGAC	2 cut(s)	284, 419
Bbv12I	GWGCWC	1 cut(s)	571
BbvI	GCAGC	1 cut(s)	607
BccI	CCATC	1 cut(s)	112
BceAI	ACGGC	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	1 cut(s)	384
BisI	GCNGC	2 cut(s)	6, 621
BlsI	GCNGC	2 cut(s)	7, 622
BpiI	GAAGAC	2 cut(s)	284, 419
BpmI	CTGGAG	2 cut(s)	555, 585
BpuEI	CTTGAG	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	25
BsaI	GGTCTC	1 cut(s)	66
BsaXI	ACNNNNNCTCC	4 cut(s)	312, 342, 553, 583
Bse1I	ACTGG	1 cut(s)	568
Bse8I	GATNNNNATC	1 cut(s)	25
BseJI	GATNNNNATC	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	2 cut(s)	75, 206
BseXI	GCAGC	1 cut(s)	607
BseYI	CCCAGC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	571
BslFI	GGGAC	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	383
Bso31I	GGTCTC	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp143I	GATC	2 cut(s)	79, 151
BspACI	CCGC	2 cut(s)	5, 15
BspCNI	CTCAG	1 cut(s)	487
BspTNI	GGTCTC	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	568
BssMI	GATC	2 cut(s)	79, 151
Bst4CI	ACNGT	2 cut(s)	260, 537
Bst6I	CTCTTC	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	495
BstKTI	GATC	2 cut(s)	82, 154
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	2 cut(s)	79, 151
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 517, 626
BstV1I	GCAGC	1 cut(s)	607
BstV2I	GAAGAC	2 cut(s)	284, 419
Cac8I	GCNNGC	1 cut(s)	105
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	5 cut(s)	103, 272, 307, 446, 569
CviKI_1	RGCY	5 cut(s)	103, 272, 307, 446, 569
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	2 cut(s)	81, 153
DpnII	GATC	2 cut(s)	79, 151
DrdI	GACNNNNNNGTC	1 cut(s)	594
DseDI	GACNNNNNNGTC	1 cut(s)	594
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	569
Eco24I	GRGCYC	1 cut(s)	571
Eco31I	GGTCTC	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	569
Eco57I	CTGAAG	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	569
EcoT38I	GRGCYC	1 cut(s)	571
FaeI	CATG	1 cut(s)	278
FaiI	YATR	6 cut(s)	84, 165, 276, 351, 353, 462
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	6, 621
FriOI	GRGCYC	1 cut(s)	571
Fsp4HI	GCNGC	2 cut(s)	6, 621
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	2 cut(s)	6, 621
GsaI	CCCAGC	1 cut(s)	36
GsuI	CTGGAG	2 cut(s)	555, 585
Hin1II	CATG	1 cut(s)	278
HincII	GTYRAC	2 cut(s)	216, 553
HindII	GTYRAC	2 cut(s)	216, 553
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	3 cut(s)	289, 374, 415
HphI	GGTGA	2 cut(s)	146, 383
Hpy166II	GTNNAC	2 cut(s)	216, 553
Hpy188I	TCNGA	1 cut(s)	420
Hpy188III	TCNNGA	4 cut(s)	286, 384, 400, 572
Hpy8I	GTNNAC	2 cut(s)	216, 553
HpyAV	CCTTC	2 cut(s)	47, 415
HpyCH4III	ACNGT	2 cut(s)	260, 537
HpyCH4V	TGCA	2 cut(s)	278, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 517, 626
HpyF3I	CTNAG	1 cut(s)	495
Hsp92II	CATG	1 cut(s)	278
Kzo9I	GATC	2 cut(s)	79, 151
LmnI	GCTCC	2 cut(s)	566, 574
LpnPI	CCDG	8 cut(s)	18, 90, 93, 147, 166, 497, 549, 585
Lsp1109I	GCAGC	1 cut(s)	607
MaeI	CTAG	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	2 cut(s)	81, 153
MboI	GATC	2 cut(s)	79, 151
MboII	GAAGA	9 cut(s)	50, 69, 233, 284, 313, 399, 424, 488, 623
MfeI	CAATTG	2 cut(s)	186, 624
MhlI	GDGCHC	1 cut(s)	571
MluCI	AATT	7 cut(s)	186, 236, 324, 343, 615, 624, 646
MlyI	GAGTC	2 cut(s)	298, 409
MmeI	TCCRAC	1 cut(s)	383
MnlI	CCTC	4 cut(s)	53, 184, 196, 309
MseI	TTAA	1 cut(s)	66
MunI	CAATTG	2 cut(s)	186, 624
MwoI	GCNNNNNNNGC	3 cut(s)	14, 517, 626
NdeII	GATC	2 cut(s)	79, 151
NlaIII	CATG	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	490
PfeI	GAWTC	1 cut(s)	374
PkrI	GCNGC	2 cut(s)	7, 622
PleI	GAGTC	2 cut(s)	297, 409
PpsI	GAGTC	2 cut(s)	297, 409
Psp124BI	GAGCTC	1 cut(s)	571
PspFI	CCCAGC	1 cut(s)	32
SacI	GAGCTC	1 cut(s)	571
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	2 cut(s)	6, 621
Sau3AI	GATC	2 cut(s)	79, 151
SchI	GAGTC	2 cut(s)	298, 409
SduI	GDGCHC	1 cut(s)	571
SetI	ASST	7 cut(s)	105, 136, 164, 309, 373, 448, 571
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	7 cut(s)	186, 236, 324, 343, 615, 624, 646
SsiI	CCGC	2 cut(s)	5, 15
SspMI	CTAG	1 cut(s)	384
SstI	GAGCTC	1 cut(s)	571
TaaI	ACNGT	2 cut(s)	260, 537
TasI	AATT	7 cut(s)	186, 236, 324, 343, 615, 624, 646
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	1 cut(s)	620
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	1 cut(s)	15
XapI	RAATTY	1 cut(s)	236
XbaI	TCTAGA	1 cut(s)	383
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.