Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000827

Physical Location & Seq

Genomic Coordinates Forward (+)

21785175 .. 21786739

Gene Structure 1565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G019600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCTGAAGGCCATCCTTCTTCGTAGTCAAGAGAAGCTGTCTGTATCTCTGCTAGTCCCAAGTTATCCAGATGTCTTTGTGCACTCACCAAACTATGAGCTGGAGACCCAGCAACCAAAAGTTCAAAAGACAGAAAGACCTCTCGAAATCAAATCGCTGTCAGTTGAGGGAGGAATTATTGCTCATGTATCTAGGACAAACCTTATAGAATCTTCTGTCGATTTGCTTCAGGAAGAACAGGAGATTGTTCCAGAGCTAACATATCAAGAAAACCTTAAAGAGCAAGAACAAGAAATGCAGTCATTTAGTCACGAGAAGCATCAACAAGCTATTCTTTCTGATGTGGTGAAGACGCCTGATTTCCTATTAGCAACTGGTGCGGAGCAGGGGTTGGAAAATGTGATTAAAGAAAATGCTGTTGAGCTTGAACTAACACTAAATGACCAATCTTGTCGAACACAACCTGAAAAGCAGCAGCAGAGGCAACTAGGTCTTCCGGGTAAACGACCATCTGAATCTTATTATGAAGTACCAGAGGCACCTAAATATCAGGATGAGGACCATCAAGCAGAAAATGTGATTAAGGAGAAGGCTGTACAGTCAAGTCACCTGAGTCTTGAATTGATAGAGCAGCAGCCCAGAGATCCAATCCAGGAAAGAATGAAGCTTGATCATAAATCAGCAGAGCAGAGGCAATTGCGCCCACATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

237

Amino Acids

27.23

Weight (kDa)

5.01

Isoelectric Point (pI)

64.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08780
fragaria_vesca	FvH4_5g27971
malus_domestica	MD06G1045800.v1.1
prunus_persica	Prupe.5G053600_v2.0.a1 Prupe.5G053600_v2.0.a1
pyrus_communis	pycom06g03880
rosa_chinensis	RchiOBHm_Chr7g0206261 RchiOBHm_Chr7g0206321 RchiOBHm_Chr7g0206331
rosa_laevigata	RLG00000003320 RLG00000003321 RLG00000003322 RLG00000003323 RLG00000003332 RLG00000003335
rosa_multiflora	Rmu_co8193150.1_g000001 Rmu_co8257597.1_g000001 Rmu_sc0000076.1_g000010 Rmu_sc0000076.1_g000011 Rmu_sc0004084.1_g000032 Rmu_sc0004084.1_g000049 Rmu_sc0005065.1_g000013 Rmu_sc0005065.1_g000014 Rmu_sc0006841.1_g000008 Rmu_sc0006841.1_g000010 Rmu_sc0006841.1_g000011 Rmu_sc0007739.1_g000013 Rmu_sc0007739.1_g000014
rosa_roxburghii	Rroxscaffold_3G00251630 Rroxscaffold_3G00251640 Rroxscaffold_3G00251710 Rroxscaffold_3G00251720 Rroxscaffold_3G00251730 Rroxscaffold_3G00251740 Rroxscaffold_3G00251800
rosa_rugosa	Rorug07G0096200
rosa_samantha	Rh7AG226900 Rh7AG227000 Rh7AG227100 Rh7AG227200 Rh7AG228200 Rh7AG228300 Rh7BG223200 Rh7BG223300 Rh7BG224500 Rh7BG224600 Rh7CG241200 Rh7CG241300 Rh7CG241400 Rh7CG241500 Rh7CG241600 Rh7CG242800 Rh7DG234300 Rh7DG234400 Rh7DG234500 Rh7DG234600 Rh7DG234700 Rh7DG234800 Rh7DG235400 Rh7DG235500 Rh7DG235600
rosa_wichuraiana	Rw7G019490 Rw7G019520 Rw7G019560 Rw7G019600 Rw7G019610 Rw7G019660 Rw7G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	538
AciI	CCGC	1 cut(s)	380
AclWI	GGATC	1 cut(s)	638
AcuI	CTGAAG	2 cut(s)	26, 212
AcyI	GRCGYC	1 cut(s)	353
AfaI	GTAC	2 cut(s)	531, 597
AgsI	TTSAA	3 cut(s)	125, 428, 620
AjnI	CCWGG	1 cut(s)	651
AluBI	AGCT	6 cut(s)	37, 100, 256, 329, 424, 667
AluI	AGCT	6 cut(s)	37, 100, 256, 329, 424, 667
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	98
Alw44I	GTGCAC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	638
AoxI	GGCC	1 cut(s)	9
ApaLI	GTGCAC	1 cut(s)	80
ApeKI	GCWGC	4 cut(s)	472, 475, 631, 634
AspLEI	GCGC	1 cut(s)	702
AspS9I	GGNCC	1 cut(s)	559
AsuC2I	CCSGG	1 cut(s)	498
AsuHPI	GGTGA	3 cut(s)	78, 358, 599
AvaII	GGWCC	1 cut(s)	559
BaeGI	GKGCMC	1 cut(s)	84
BanI	GGYRCC	1 cut(s)	538
BauI	CACGAG	1 cut(s)	311
BbsI	GAAGAC	2 cut(s)	356, 485
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	4 cut(s)	484, 487, 643, 646
BccI	CCATC	3 cut(s)	20, 517, 570
BciT130I	CCWGG	1 cut(s)	653
BclI	TGATCA	1 cut(s)	670
BcnI	CCSGG	1 cut(s)	498
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	4 cut(s)	53, 192, 488, 712
BisI	GCNGC	4 cut(s)	473, 476, 632, 635
BlsI	GCNGC	4 cut(s)	474, 477, 633, 636
Bme1390I	CCNGG	2 cut(s)	498, 653
Bme18I	GGWCC	1 cut(s)	559
BmgT120I	GGNCC	1 cut(s)	559
BmiI	GGNNCC	1 cut(s)	540
BmrFI	CCNGG	2 cut(s)	498, 653
BmsI	GCATC	1 cut(s)	328
BpiI	GAAGAC	2 cut(s)	356, 485
BpmI	CTGGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	498
BsaHI	GRCGYC	1 cut(s)	353
BsaI	GGTCTC	1 cut(s)	98
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	1 cut(s)	706
BseBI	CCWGG	1 cut(s)	653
BseGI	GGATG	2 cut(s)	12, 559
BseMI	GCAATG	1 cut(s)	706
BseMII	CTCAG	1 cut(s)	602
BseNI	ACTGG	1 cut(s)	379
BseSI	GKGCMC	1 cut(s)	84
BseXI	GCAGC	4 cut(s)	484, 487, 643, 646
BseYI	CCCAGC	1 cut(s)	108
BshFI	GGCC	1 cut(s)	11
BshNI	GGYRCC	1 cut(s)	538
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	497
BslFI	GGGAC	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	11
Bso31I	GGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp1407I	TGTACA	1 cut(s)	595
Bsp143I	GATC	2 cut(s)	643, 670
BspACI	CCGC	1 cut(s)	380
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	1 cut(s)	603
BspLI	GGNNCC	1 cut(s)	540
BspPI	GGATC	1 cut(s)	638
BspT107I	GGYRCC	1 cut(s)	538
BspTNI	GGTCTC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	706
BsrGI	TGTACA	1 cut(s)	595
BsrI	ACTGG	1 cut(s)	379
BssMI	GATC	2 cut(s)	643, 670
BssNI	GRCGYC	1 cut(s)	353
BssSI	CACGAG	1 cut(s)	311
Bst2BI	CACGAG	1 cut(s)	311
Bst2UI	CCWGG	1 cut(s)	653
Bst4CI	ACNGT	1 cut(s)	600
BstACI	GRCGYC	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstAUI	TGTACA	1 cut(s)	595
BstDEI	CTNAG	1 cut(s)	611
BstF5I	GGATG	2 cut(s)	12, 559
BstHHI	GCGC	1 cut(s)	702
BstKTI	GATC	2 cut(s)	646, 673
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	2 cut(s)	643, 670
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 481, 708
BstNI	CCWGG	1 cut(s)	653
BstSCI	CCNGG	2 cut(s)	496, 651
BstSLI	GKGCMC	1 cut(s)	84
BstV1I	GCAGC	4 cut(s)	484, 487, 643, 646
BstV2I	GAAGAC	2 cut(s)	356, 485
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
BsuRI	GGCC	1 cut(s)	11
BtsCI	GGATG	2 cut(s)	12, 559
CfoI	GCGC	1 cut(s)	702
Cfr13I	GGNCC	1 cut(s)	559
CseI	GACGC	1 cut(s)	361
Csp6I	GTAC	2 cut(s)	530, 596
CviAII	CATG	1 cut(s)	185
CviJI	RGCY	9 cut(s)	11, 37, 100, 256, 329, 424, 593, 637, 667
CviKI_1	RGCY	9 cut(s)	11, 37, 100, 256, 329, 424, 593, 637, 667
CviQI	GTAC	2 cut(s)	530, 596
DdeI	CTNAG	1 cut(s)	611
DpnI	GATC	2 cut(s)	645, 672
DpnII	GATC	2 cut(s)	643, 670
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	559
Eco57I	CTGAAG	2 cut(s)	26, 212
EcoRII	CCWGG	1 cut(s)	651
FaeI	CATG	1 cut(s)	188
FaiI	YATR	6 cut(s)	96, 186, 206, 262, 525, 675
FalI	AAGNNNNNCTT	4 cut(s)	258, 290, 318, 350
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	1 cut(s)	184
FbaI	TGATCA	1 cut(s)	670
Fnu4HI	GCNGC	4 cut(s)	473, 476, 632, 635
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	4 cut(s)	473, 476, 632, 635
FspBI	CTAG	4 cut(s)	53, 192, 488, 712
GlaI	GCGC	1 cut(s)	701
GluI	GCNGC	4 cut(s)	473, 476, 632, 635
GsaI	CCCAGC	1 cut(s)	112
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	1 cut(s)	497
HgaI	GACGC	1 cut(s)	361
HhaI	GCGC	1 cut(s)	702
Hin1I	GRCGYC	1 cut(s)	353
Hin1II	CATG	1 cut(s)	188
Hin6I	GCGC	1 cut(s)	700
HinP1I	GCGC	1 cut(s)	700
HindIII	AAGCTT	1 cut(s)	665
HinfI	GANTC	3 cut(s)	209, 515, 613
HpaII	CCGG	1 cut(s)	497
HphI	GGTGA	3 cut(s)	78, 358, 599
Hpy166II	GTNNAC	2 cut(s)	82, 503
Hpy188I	TCNGA	2 cut(s)	340, 514
Hpy188III	TCNNGA	9 cut(s)	29, 68, 143, 230, 251, 266, 311, 551, 617
Hpy8I	GTNNAC	2 cut(s)	82, 503
HpyAV	CCTTC	2 cut(s)	26, 583
HpyCH4III	ACNGT	1 cut(s)	600
HpyCH4V	TGCA	2 cut(s)	82, 298
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 481, 708
HpyF3I	CTNAG	1 cut(s)	611
Hsp92I	GRCGYC	1 cut(s)	353
Hsp92II	CATG	1 cut(s)	188
HspAI	GCGC	1 cut(s)	700
Ksp22I	TGATCA	1 cut(s)	670
Kzo9I	GATC	2 cut(s)	643, 670
LmnI	GCTCC	1 cut(s)	382
Lsp1109I	GCAGC	4 cut(s)	484, 487, 643, 646
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	4 cut(s)	53, 192, 488, 712
MaeIII	GTNAC	2 cut(s)	308, 605
MalI	GATC	2 cut(s)	645, 672
MboI	GATC	2 cut(s)	643, 670
MboII	GAAGA	5 cut(s)	11, 204, 245, 361, 485
MfeI	CAATTG	1 cut(s)	695
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	3 cut(s)	174, 620, 695
MlyI	GAGTC	1 cut(s)	622
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	7 cut(s)	150, 160, 164, 474, 529, 550, 684
MseI	TTAA	3 cut(s)	276, 405, 582
MspI	CCGG	1 cut(s)	497
MspR9I	CCNGG	2 cut(s)	498, 653
MunI	CAATTG	1 cut(s)	695
MvaI	CCWGG	1 cut(s)	653
MwoI	GCNNNNNNNGC	3 cut(s)	377, 481, 708
NciI	CCSGG	1 cut(s)	498
NdeII	GATC	2 cut(s)	643, 670
NlaIII	CATG	1 cut(s)	188
NlaIV	GGNNCC	1 cut(s)	540
NmuCI	GTSAC	2 cut(s)	308, 605
PfeI	GAWTC	2 cut(s)	209, 515
PfoI	TCCNGGA	1 cut(s)	651
PkrI	GCNGC	4 cut(s)	474, 477, 633, 636
PleI	GAGTC	1 cut(s)	621
PpsI	GAGTC	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	651
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	651
PspN4I	GGNNCC	1 cut(s)	540
PspPI	GGNCC	1 cut(s)	559
PsuI	RGATCY	1 cut(s)	643
RsaI	GTAC	2 cut(s)	531, 597
RsaNI	GTAC	2 cut(s)	530, 596
SaqAI	TTAA	3 cut(s)	276, 405, 582
SatI	GCNGC	4 cut(s)	473, 476, 632, 635
Sau3AI	GATC	2 cut(s)	643, 670
Sau96I	GGNCC	1 cut(s)	559
SchI	GAGTC	1 cut(s)	622
ScrFI	CCNGG	2 cut(s)	498, 653
SduI	GDGCHC	1 cut(s)	84
SfaNI	GCATC	1 cut(s)	328
SinI	GGWCC	1 cut(s)	559
Sse9I	AATT	3 cut(s)	174, 620, 695
SsiI	CCGC	1 cut(s)	380
SspMI	CTAG	4 cut(s)	53, 192, 488, 712
StyD4I	CCNGG	2 cut(s)	496, 651
TaaI	ACNGT	1 cut(s)	600
TaqI	TCGA	3 cut(s)	144, 219, 454
TasI	AATT	3 cut(s)	174, 620, 695
TatI	WGTACW	1 cut(s)	595
TfiI	GAWTC	2 cut(s)	209, 515
Tru1I	TTAA	3 cut(s)	276, 405, 582
Tru9I	TTAA	3 cut(s)	276, 405, 582
TseFI	GTSAC	2 cut(s)	308, 605
TseI	GCWGC	4 cut(s)	472, 475, 631, 634
Tsp45I	GTSAC	2 cut(s)	308, 605
TspDTI	ATGAA	2 cut(s)	540, 677
VneI	GTGCAC	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	559
XspI	CTAG	4 cut(s)	53, 192, 488, 712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.