Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000827

Physical Location & Seq

Genomic Coordinates Forward (+)

23337765 .. 23338625

Gene Structure 861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG234800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCCATTGGTCCAATCCTCCCTTGCAAAAAAACTAGCATTAGGCCGTCAGATTGTAGAACTTCTCAGTACTCCTGAAGCATGTGAAGATGTAGGACCAACAATCATGGATAAGTTATCTCAACCGGTGGTGCAAAATACAGATCATCATGGTCAACAAAAGATGTTGAAATCCAAGCCAACAACAATGGCAGAAAGTCCACAGCTCAAGTCAGCATCAGTGGAAGATCTTCCTCAAACAGCAAAAGAGTTGCAACAGAAGAAGCTGTGCCATATGAACTTGCGTTCATGCAGCCAAGCTGCATCACAACCTGAGCTTGTTGTATCGATGGCAAAATCATTGCCCTCAGAACACCAGTGTGAGCAGCCACAAGAAATGAAGCATCAAGGCCTACGGAGGCCTAAGTTGAATTCACAAAATCAGCATAATGGTGAACTTCAGCCCCCAAAGCATCTTGAGCAGCCACAGAAACCAAGAGGCAGGGCTCCTAAACGAAAACTGGATGTGGCTGCAAATGAAGATGTATCATTGCCTCCTAAGTATCAGAAGCTGCAGGATGAACCAGAAAATCAAAGACAAGAGAGGCCTCCTAAGTTGAAAAGAAATATGGTTTTGGGTCTTTTTGCCGCATCAAAATATGAACCTGCTCTGTCGATGACAGACTCACTGTTCCTAAAGGTGAATCCAGATATTGAGCATCATGAGCTGCAGCCCCAGAAGCATCCTGAGCAACCACAAAATCGAAGGGGCAGGCCTCGAAAGTTGAATCCAGATAATGAGCTTGTGAAGGACTGCCACACCCAAAGCAACCTGAGCAGCCACAAAATCCAAAAAGACAACGAGGGAGGCCCTGTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

286

Amino Acids

32.27

Weight (kDa)

9.18

Isoelectric Point (pI)

66.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08780
fragaria_vesca	FvH4_5g27971
malus_domestica	MD06G1045800.v1.1
prunus_persica	Prupe.5G053600_v2.0.a1 Prupe.5G053600_v2.0.a1
pyrus_communis	pycom06g03880
rosa_chinensis	RchiOBHm_Chr7g0206261 RchiOBHm_Chr7g0206321 RchiOBHm_Chr7g0206331
rosa_laevigata	RLG00000003320 RLG00000003321 RLG00000003322 RLG00000003323 RLG00000003332 RLG00000003335
rosa_multiflora	Rmu_co8193150.1_g000001 Rmu_co8257597.1_g000001 Rmu_sc0000076.1_g000010 Rmu_sc0000076.1_g000011 Rmu_sc0004084.1_g000032 Rmu_sc0004084.1_g000049 Rmu_sc0005065.1_g000013 Rmu_sc0005065.1_g000014 Rmu_sc0006841.1_g000008 Rmu_sc0006841.1_g000010 Rmu_sc0006841.1_g000011 Rmu_sc0007739.1_g000013 Rmu_sc0007739.1_g000014
rosa_roxburghii	Rroxscaffold_3G00251630 Rroxscaffold_3G00251640 Rroxscaffold_3G00251710 Rroxscaffold_3G00251720 Rroxscaffold_3G00251730 Rroxscaffold_3G00251740 Rroxscaffold_3G00251800
rosa_rugosa	Rorug07G0096200
rosa_samantha	Rh7AG226900 Rh7AG227000 Rh7AG227100 Rh7AG227200 Rh7AG228200 Rh7AG228300 Rh7BG223200 Rh7BG223300 Rh7BG224500 Rh7BG224600 Rh7CG241200 Rh7CG241300 Rh7CG241400 Rh7CG241500 Rh7CG241600 Rh7CG242800 Rh7DG234300 Rh7DG234400 Rh7DG234500 Rh7DG234600 Rh7DG234700 Rh7DG234800 Rh7DG235400 Rh7DG235500 Rh7DG235600
rosa_wichuraiana	Rw7G019490 Rw7G019520 Rw7G019560 Rw7G019600 Rw7G019610 Rw7G019660 Rw7G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	652
AciI	CCGC	1 cut(s)	627
AcsI	RAATTY	1 cut(s)	409
AcuI	CTGAAG	2 cut(s)	96, 422
AfaI	GTAC	1 cut(s)	70
AgeI	ACCGGT	1 cut(s)	124
AgsI	TTSAA	4 cut(s)	169, 409, 598, 766
AleI	CACNNNNGTG	1 cut(s)	357
AluBI	AGCT	7 cut(s)	205, 265, 299, 316, 550, 706, 781
AluI	AGCT	7 cut(s)	205, 265, 299, 316, 550, 706, 781
AlwNI	CAGNNNCTG	1 cut(s)	550
AoxI	GGCC	6 cut(s)	43, 388, 398, 584, 752, 847
ApeKI	GCWGC	9 cut(s)	291, 299, 364, 460, 509, 550, 706, 709, 816
ApoI	RAATTY	1 cut(s)	409
AsiGI	ACCGGT	1 cut(s)	124
Asp700I	GAANNNNTTC	1 cut(s)	228
AspS9I	GGNCC	3 cut(s)	10, 95, 848
AsuHPI	GGTGA	2 cut(s)	443, 691
AvaII	GGWCC	2 cut(s)	10, 95
BanII	GRGCYC	1 cut(s)	487
BbvI	GCAGC	9 cut(s)	286, 303, 376, 472, 496, 537, 693, 721, 828
BccI	CCATC	1 cut(s)	322
BceAI	ACGGC	1 cut(s)	30
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	2 cut(s)	551, 707
BfuAI	ACCTGC	1 cut(s)	652
BglII	AGATCT	1 cut(s)	226
BmcAI	AGTACT	1 cut(s)	70
Bme18I	GGWCC	2 cut(s)	10, 95
BmgT120I	GGNCC	3 cut(s)	10, 95, 848
BmiI	GGNNCC	1 cut(s)	486
BmsI	GCATC	7 cut(s)	224, 311, 391, 460, 638, 706, 730
Bpu10I	CCTNAGC	3 cut(s)	312, 726, 812
BpuEI	CTTGAG	2 cut(s)	191, 476
Bsa29I	ATCGAT	1 cut(s)	326
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	1 cut(s)	837
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	2 cut(s)	355, 504
Bse3DI	GCAATG	2 cut(s)	338, 527
BseCI	ATCGAT	1 cut(s)	326
BseGI	GGATG	3 cut(s)	508, 562, 721
BseMI	GCAATG	2 cut(s)	338, 527
BseMII	CTCAG	5 cut(s)	79, 303, 360, 717, 803
BseNI	ACTGG	2 cut(s)	355, 504
BseXI	GCAGC	9 cut(s)	286, 303, 376, 472, 496, 537, 693, 721, 828
BshFI	GGCC	6 cut(s)	45, 390, 400, 586, 754, 849
BshTI	ACCGGT	1 cut(s)	124
BshVI	ATCGAT	1 cut(s)	326
BsiSI	CCGG	1 cut(s)	125
BsnI	GGCC	6 cut(s)	45, 390, 400, 586, 754, 849
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp143I	GATC	2 cut(s)	142, 226
BspACI	CCGC	1 cut(s)	627
BspANI	GGCC	6 cut(s)	45, 390, 400, 586, 754, 849
BspCNI	CTCAG	5 cut(s)	78, 304, 359, 718, 804
BspDI	ATCGAT	1 cut(s)	326
BspHI	TCATGA	1 cut(s)	700
BspLI	GGNNCC	1 cut(s)	486
BspMAI	CTGCAG	2 cut(s)	555, 711
BspMI	ACCTGC	1 cut(s)	652
BsrDI	GCAATG	2 cut(s)	338, 527
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	355, 504
BssAI	RCCGGY	1 cut(s)	124
BssMI	GATC	2 cut(s)	142, 226
Bst4CI	ACNGT	1 cut(s)	669
BstC8I	GCNNGC	1 cut(s)	752
BstDEI	CTNAG	8 cut(s)	65, 312, 346, 402, 537, 591, 726, 812
BstF5I	GGATG	3 cut(s)	508, 562, 721
BstKTI	GATC	2 cut(s)	145, 229
BstMBI	GATC	2 cut(s)	142, 226
BstMWI	GCNNNNNNNGC	6 cut(s)	448, 457, 703, 718, 727, 813
BstNSI	RCATGY	1 cut(s)	84
BstSFI	CTRYAG	2 cut(s)	551, 707
BstV1I	GCAGC	9 cut(s)	286, 303, 376, 472, 496, 537, 693, 721, 828
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
Bsu15I	ATCGAT	1 cut(s)	326
BsuRI	GGCC	6 cut(s)	45, 390, 400, 586, 754, 849
BsuTUI	ATCGAT	1 cut(s)	326
BtsCI	GGATG	3 cut(s)	508, 562, 721
BtsIMutI	CAGTG	3 cut(s)	225, 362, 665
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	1 cut(s)	752
CaiI	CAGNNNCTG	1 cut(s)	550
CciI	TCATGA	1 cut(s)	700
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	3 cut(s)	10, 95, 848
ClaI	ATCGAT	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	69
CspAI	ACCGGT	1 cut(s)	124
CviAII	CATG	5 cut(s)	81, 106, 149, 288, 701
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	8 cut(s)	65, 312, 346, 402, 537, 591, 726, 812
DpnI	GATC	2 cut(s)	144, 228
DpnII	GATC	2 cut(s)	142, 226
Eco147I	AGGCCT	4 cut(s)	390, 400, 586, 754
Eco24I	GRGCYC	1 cut(s)	487
Eco47I	GGWCC	2 cut(s)	10, 95
Eco57I	CTGAAG	2 cut(s)	96, 422
EcoO109I	RGGNCCY	1 cut(s)	848
EcoRI	GAATTC	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	487
FaeI	CATG	5 cut(s)	84, 109, 152, 291, 704
FatI	CATG	5 cut(s)	80, 105, 148, 287, 700
FauNDI	CATATG	1 cut(s)	273
FokI	GGATG	3 cut(s)	515, 569, 708
FriOI	GRGCYC	1 cut(s)	487
FspBI	CTAG	1 cut(s)	35
HaeIII	GGCC	6 cut(s)	45, 390, 400, 586, 754, 849
HapII	CCGG	1 cut(s)	125
Hin1II	CATG	5 cut(s)	84, 109, 152, 291, 704
HincII	GTYRAC	1 cut(s)	155
HindII	GTYRAC	1 cut(s)	155
HinfI	GANTC	3 cut(s)	662, 682, 766
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	2 cut(s)	443, 691
Hpy166II	GTNNAC	3 cut(s)	155, 200, 434
Hpy188I	TCNGA	3 cut(s)	51, 349, 546
Hpy188III	TCNNGA	6 cut(s)	74, 455, 686, 701, 725, 770
Hpy8I	GTNNAC	3 cut(s)	155, 200, 434
HpyAV	CCTTC	2 cut(s)	738, 781
HpyCH4III	ACNGT	1 cut(s)	669
HpyCH4V	TGCA	8 cut(s)	26, 133, 253, 291, 302, 512, 553, 709
HpyF10VI	GCNNNNNNNGC	6 cut(s)	448, 457, 703, 718, 727, 813
HpyF3I	CTNAG	8 cut(s)	65, 312, 346, 402, 537, 591, 726, 812
Hsp92II	CATG	5 cut(s)	84, 109, 152, 291, 704
Kzo9I	GATC	2 cut(s)	142, 226
LmnI	GCTCC	1 cut(s)	490
Lsp1109I	GCAGC	9 cut(s)	286, 303, 376, 472, 496, 537, 693, 721, 828
LweI	GCATC	7 cut(s)	224, 311, 391, 460, 638, 706, 730
MaeI	CTAG	1 cut(s)	35
MalI	GATC	2 cut(s)	144, 228
MboI	GATC	2 cut(s)	142, 226
MboII	GAAGA	5 cut(s)	98, 221, 236, 271, 530
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	487
MluCI	AATT	1 cut(s)	409
MlyI	GAGTC	1 cut(s)	656
MroXI	GAANNNNTTC	1 cut(s)	228
MslI	CAYNNNNRTG	2 cut(s)	357, 429
MspI	CCGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	6 cut(s)	448, 457, 703, 718, 727, 813
NdeI	CATATG	1 cut(s)	273
NdeII	GATC	2 cut(s)	142, 226
NlaIII	CATG	5 cut(s)	84, 109, 152, 291, 704
NlaIV	GGNNCC	1 cut(s)	486
NspI	RCATGY	1 cut(s)	84
OliI	CACNNNNGTG	1 cut(s)	357
PagI	TCATGA	1 cut(s)	700
PceI	AGGCCT	4 cut(s)	390, 400, 586, 754
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	682, 766
PinAI	ACCGGT	1 cut(s)	124
PleI	GAGTC	1 cut(s)	656
PpsI	GAGTC	1 cut(s)	656
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	3 cut(s)	10, 95, 848
PstI	CTGCAG	2 cut(s)	555, 711
PstNI	CAGNNNCTG	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
RseI	CAYNNNNRTG	2 cut(s)	357, 429
Sau3AI	GATC	2 cut(s)	142, 226
Sau96I	GGNCC	3 cut(s)	10, 95, 848
ScaI	AGTACT	1 cut(s)	70
SchI	GAGTC	1 cut(s)	656
SduI	GDGCHC	1 cut(s)	487
SfaNI	GCATC	7 cut(s)	224, 311, 391, 460, 638, 706, 730
SfcI	CTRYAG	2 cut(s)	551, 707
SinI	GGWCC	2 cut(s)	10, 95
SmiMI	CAYNNNNRTG	2 cut(s)	357, 429
SmlI	CTYRAG	2 cut(s)	206, 455
SmoI	CTYRAG	2 cut(s)	206, 455
Sse9I	AATT	1 cut(s)	409
SseBI	AGGCCT	4 cut(s)	390, 400, 586, 754
SsiI	CCGC	1 cut(s)	627
SspMI	CTAG	1 cut(s)	35
StuI	AGGCCT	4 cut(s)	390, 400, 586, 754
TaaI	ACNGT	1 cut(s)	669
TaqI	TCGA	4 cut(s)	326, 653, 742, 757
TasI	AATT	1 cut(s)	409
TatI	WGTACW	1 cut(s)	68
TauI	GCSGC	1 cut(s)	629
TfiI	GAWTC	2 cut(s)	682, 766
TscAI	CASTG	3 cut(s)	225, 362, 672
TseI	GCWGC	9 cut(s)	291, 299, 364, 460, 509, 550, 706, 709, 816
TspDTI	ATGAA	6 cut(s)	276, 290, 392, 531, 573, 654
TspGWI	ACGGA	1 cut(s)	409
TspRI	CASTG	3 cut(s)	225, 362, 672
VpaK11BI	GGWCC	2 cut(s)	10, 95
XapI	RAATTY	1 cut(s)	409
XceI	RCATGY	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	1 cut(s)	35
ZrmI	AGTACT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.