Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000827

Physical Location & Seq

Genomic Coordinates Forward (+)

22576496 .. 22577029

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG241600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCAAAATCATTGCCCTCAGAACACCAGTATGAGCAGCCACAAGAAATGAAGCATCAAGGCCTACGGAGGCCTAAGTTGAATTCACAAAATCAGCATAATGGTGAACTTCAGCCCCCAAAGCATCTTGAGCAGCCACAGAAACCAAGAGGCAGGGCTCCTAAACGAAAACTGGATGTGGCTGCAAATGAAGATGTATCATTGCCTGCTAAGTATCAGAAGCTGCAGGATGAACCAGAAAATCAAAGACAAGAGAGGCCTCCTAAGTTGAAAAGAAATATGGTTTTGGGTCTTTTTGCCGCATCAAAATATGAACCTGCTCTGTCGATGACAGACTCACTGTTCCTAAAGGTGAATCCAGATATTGAGCATCATGAGCTGCAGCCCCAGAAGCATCCTGAGCAACCACAAAATCGAAGGGGCAGGCCTCGAAAGTTGAATCCAGATAATGAGCTTGTGAAGGACTGCCACACCCAAAGCAACCTGAGCAGCCACAAAATCCAAAAAGACAACGAGGGAGGCCCTGTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

20.43

Weight (kDa)

9.52

Isoelectric Point (pI)

65.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08780
fragaria_vesca	FvH4_5g27971
malus_domestica	MD06G1045800.v1.1
prunus_persica	Prupe.5G053600_v2.0.a1 Prupe.5G053600_v2.0.a1
pyrus_communis	pycom06g03880
rosa_chinensis	RchiOBHm_Chr7g0206261 RchiOBHm_Chr7g0206321 RchiOBHm_Chr7g0206331
rosa_laevigata	RLG00000003320 RLG00000003321 RLG00000003322 RLG00000003323 RLG00000003332 RLG00000003335
rosa_multiflora	Rmu_co8193150.1_g000001 Rmu_co8257597.1_g000001 Rmu_sc0000076.1_g000010 Rmu_sc0000076.1_g000011 Rmu_sc0004084.1_g000032 Rmu_sc0004084.1_g000049 Rmu_sc0005065.1_g000013 Rmu_sc0005065.1_g000014 Rmu_sc0006841.1_g000008 Rmu_sc0006841.1_g000010 Rmu_sc0006841.1_g000011 Rmu_sc0007739.1_g000013 Rmu_sc0007739.1_g000014
rosa_roxburghii	Rroxscaffold_3G00251630 Rroxscaffold_3G00251640 Rroxscaffold_3G00251710 Rroxscaffold_3G00251720 Rroxscaffold_3G00251730 Rroxscaffold_3G00251740 Rroxscaffold_3G00251800
rosa_rugosa	Rorug07G0096200
rosa_samantha	Rh7AG226900 Rh7AG227000 Rh7AG227100 Rh7AG227200 Rh7AG228200 Rh7AG228300 Rh7BG223200 Rh7BG223300 Rh7BG224500 Rh7BG224600 Rh7CG241200 Rh7CG241300 Rh7CG241400 Rh7CG241500 Rh7CG241600 Rh7CG242800 Rh7DG234300 Rh7DG234400 Rh7DG234500 Rh7DG234600 Rh7DG234700 Rh7DG234800 Rh7DG235400 Rh7DG235500 Rh7DG235600
rosa_wichuraiana	Rw7G019490 Rw7G019520 Rw7G019560 Rw7G019600 Rw7G019610 Rw7G019660 Rw7G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	325
AciI	CCGC	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	95
AgsI	TTSAA	3 cut(s)	82, 271, 439
AluBI	AGCT	3 cut(s)	223, 379, 454
AluI	AGCT	3 cut(s)	223, 379, 454
AlwNI	CAGNNNCTG	1 cut(s)	223
AoxI	GGCC	5 cut(s)	61, 71, 257, 425, 520
ApeKI	GCWGC	7 cut(s)	37, 133, 182, 223, 379, 382, 489
ApoI	RAATTY	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	521
AsuHPI	GGTGA	2 cut(s)	116, 364
BanII	GRGCYC	1 cut(s)	160
BbvI	GCAGC	7 cut(s)	49, 145, 169, 210, 366, 394, 501
BfmI	CTRYAG	2 cut(s)	224, 380
BfuAI	ACCTGC	1 cut(s)	325
BisI	GCNGC	8 cut(s)	38, 134, 183, 224, 300, 380, 383, 490
BlsI	GCNGC	8 cut(s)	39, 135, 184, 225, 301, 381, 384, 491
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	1 cut(s)	159
BmsI	GCATC	5 cut(s)	64, 133, 311, 379, 403
Bpu10I	CCTNAGC	2 cut(s)	399, 485
BpuEI	CTTGAG	1 cut(s)	149
BsaXI	ACNNNNNCTCC	1 cut(s)	510
Bse1I	ACTGG	2 cut(s)	28, 177
Bse3DI	GCAATG	2 cut(s)	11, 200
BseGI	GGATG	3 cut(s)	181, 235, 394
BseMI	GCAATG	2 cut(s)	11, 200
BseMII	CTCAG	3 cut(s)	33, 390, 476
BseNI	ACTGG	2 cut(s)	28, 177
BseXI	GCAGC	7 cut(s)	49, 145, 169, 210, 366, 394, 501
BshFI	GGCC	5 cut(s)	63, 73, 259, 427, 522
BsnI	GGCC	5 cut(s)	63, 73, 259, 427, 522
Bsp1286I	GDGCHC	1 cut(s)	160
BspACI	CCGC	1 cut(s)	300
BspANI	GGCC	5 cut(s)	63, 73, 259, 427, 522
BspCNI	CTCAG	3 cut(s)	32, 391, 477
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	159
BspMAI	CTGCAG	2 cut(s)	228, 384
BspMI	ACCTGC	1 cut(s)	325
BsrDI	GCAATG	2 cut(s)	11, 200
BsrI	ACTGG	2 cut(s)	28, 177
Bst4CI	ACNGT	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	207, 425
BstDEI	CTNAG	6 cut(s)	19, 75, 210, 264, 399, 485
BstF5I	GGATG	3 cut(s)	181, 235, 394
BstMWI	GCNNNNNNNGC	6 cut(s)	121, 130, 376, 391, 400, 486
BstSFI	CTRYAG	2 cut(s)	224, 380
BstV1I	GCAGC	7 cut(s)	49, 145, 169, 210, 366, 394, 501
BsuRI	GGCC	5 cut(s)	63, 73, 259, 427, 522
BtsCI	GGATG	3 cut(s)	181, 235, 394
BtsIMutI	CAGTG	1 cut(s)	338
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	2 cut(s)	207, 425
CaiI	CAGNNNCTG	1 cut(s)	223
CciI	TCATGA	1 cut(s)	373
Cfr13I	GGNCC	1 cut(s)	521
CviAII	CATG	1 cut(s)	374
DdeI	CTNAG	6 cut(s)	19, 75, 210, 264, 399, 485
Eco147I	AGGCCT	4 cut(s)	63, 73, 259, 427
Eco24I	GRGCYC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	521
EcoRI	GAATTC	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	160
FaeI	CATG	1 cut(s)	377
FaiI	YATR	5 cut(s)	33, 99, 281, 312, 375
FatI	CATG	1 cut(s)	373
Fnu4HI	GCNGC	8 cut(s)	38, 134, 183, 224, 300, 380, 383, 490
FokI	GGATG	3 cut(s)	188, 242, 381
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	8 cut(s)	38, 134, 183, 224, 300, 380, 383, 490
GluI	GCNGC	8 cut(s)	38, 134, 183, 224, 300, 380, 383, 490
HaeIII	GGCC	5 cut(s)	63, 73, 259, 427, 522
Hin1II	CATG	1 cut(s)	377
HinfI	GANTC	3 cut(s)	335, 355, 439
HphI	GGTGA	2 cut(s)	116, 364
Hpy166II	GTNNAC	1 cut(s)	107
Hpy188I	TCNGA	2 cut(s)	22, 219
Hpy188III	TCNNGA	5 cut(s)	128, 359, 374, 398, 443
Hpy8I	GTNNAC	1 cut(s)	107
HpyAV	CCTTC	2 cut(s)	411, 454
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4V	TGCA	3 cut(s)	185, 226, 382
HpyF10VI	GCNNNNNNNGC	6 cut(s)	121, 130, 376, 391, 400, 486
HpyF3I	CTNAG	6 cut(s)	19, 75, 210, 264, 399, 485
Hsp92II	CATG	1 cut(s)	377
LmnI	GCTCC	1 cut(s)	163
Lsp1109I	GCAGC	7 cut(s)	49, 145, 169, 210, 366, 394, 501
LweI	GCATC	5 cut(s)	64, 133, 311, 379, 403
MboII	GAAGA	1 cut(s)	203
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	1 cut(s)	82
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	8 cut(s)	28, 63, 143, 249, 270, 438, 508, 512
MslI	CAYNNNNRTG	2 cut(s)	30, 102
MwoI	GCNNNNNNNGC	6 cut(s)	121, 130, 376, 391, 400, 486
NlaIII	CATG	1 cut(s)	377
NlaIV	GGNNCC	1 cut(s)	159
PagI	TCATGA	1 cut(s)	373
PceI	AGGCCT	4 cut(s)	63, 73, 259, 427
PfeI	GAWTC	2 cut(s)	355, 439
PkrI	GCNGC	8 cut(s)	39, 135, 184, 225, 301, 381, 384, 491
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	521
PstI	CTGCAG	2 cut(s)	228, 384
PstNI	CAGNNNCTG	1 cut(s)	223
RseI	CAYNNNNRTG	2 cut(s)	30, 102
SatI	GCNGC	8 cut(s)	38, 134, 183, 224, 300, 380, 383, 490
Sau96I	GGNCC	1 cut(s)	521
SchI	GAGTC	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	6 cut(s)	225, 319, 354, 381, 456, 486
SfaNI	GCATC	5 cut(s)	64, 133, 311, 379, 403
SfcI	CTRYAG	2 cut(s)	224, 380
SmiMI	CAYNNNNRTG	2 cut(s)	30, 102
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	1 cut(s)	82
SseBI	AGGCCT	4 cut(s)	63, 73, 259, 427
SsiI	CCGC	1 cut(s)	300
StuI	AGGCCT	4 cut(s)	63, 73, 259, 427
TaaI	ACNGT	1 cut(s)	342
TaqI	TCGA	3 cut(s)	326, 415, 430
TasI	AATT	1 cut(s)	82
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	2 cut(s)	355, 439
TscAI	CASTG	1 cut(s)	345
TseI	GCWGC	7 cut(s)	37, 133, 182, 223, 379, 382, 489
TspDTI	ATGAA	4 cut(s)	65, 204, 246, 327
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	1 cut(s)	345
XapI	RAATTY	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.