Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004084.1

Orthogroup ID

OG0000827

Physical Location & Seq

Genomic Coordinates Forward (+)

247967 .. 249534

Gene Structure 1568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004084.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgctgaaggccatccttcttcgtagtcaagagaagctgtctgtatctctgctagtcccaagttatccagatgtctttgtgcactcaccaaactatgagttggagacccagcaaccaaaagttcaaaagacaaaaagacctctcgaaatcaaatcgctgtcagttgagggaggaattattgctcatgtatccaggacaaaccttatagaatcttctgtcgatttgcttaaggaagaacaggagattgttccagagctaacatatcaagaaaaccttaaagagcaagaacaagaaatgcagtcatttagtcacgagaagcatcaacaagctattctttctgatgtggtgaagacggctgatttcctattagcaactgatgaggaccatcaagcagaaaatgtgattaaggagaaggctgtacagccaagtcacctgagtcttgaattgatagagcagcagcccagagatccaatccaggaaagaatgaagcttgatcataaatcagtagagcagaggcaattgcgcccacgttgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

178

Amino Acids

20.57

Weight (kDa)

5.41

Isoelectric Point (pI)

56.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08780
fragaria_vesca	FvH4_5g27971
malus_domestica	MD06G1045800.v1.1
prunus_persica	Prupe.5G053600_v2.0.a1 Prupe.5G053600_v2.0.a1
pyrus_communis	pycom06g03880
rosa_chinensis	RchiOBHm_Chr7g0206261 RchiOBHm_Chr7g0206321 RchiOBHm_Chr7g0206331
rosa_laevigata	RLG00000003320 RLG00000003321 RLG00000003322 RLG00000003323 RLG00000003332 RLG00000003335
rosa_multiflora	Rmu_co8193150.1_g000001 Rmu_co8257597.1_g000001 Rmu_sc0000076.1_g000010 Rmu_sc0000076.1_g000011 Rmu_sc0004084.1_g000032 Rmu_sc0004084.1_g000049 Rmu_sc0005065.1_g000013 Rmu_sc0005065.1_g000014 Rmu_sc0006841.1_g000008 Rmu_sc0006841.1_g000010 Rmu_sc0006841.1_g000011 Rmu_sc0007739.1_g000013 Rmu_sc0007739.1_g000014
rosa_roxburghii	Rroxscaffold_3G00251630 Rroxscaffold_3G00251640 Rroxscaffold_3G00251710 Rroxscaffold_3G00251720 Rroxscaffold_3G00251730 Rroxscaffold_3G00251740 Rroxscaffold_3G00251800
rosa_rugosa	Rorug07G0096200
rosa_samantha	Rh7AG226900 Rh7AG227000 Rh7AG227100 Rh7AG227200 Rh7AG228200 Rh7AG228300 Rh7BG223200 Rh7BG223300 Rh7BG224500 Rh7BG224600 Rh7CG241200 Rh7CG241300 Rh7CG241400 Rh7CG241500 Rh7CG241600 Rh7CG242800 Rh7DG234300 Rh7DG234400 Rh7DG234500 Rh7DG234600 Rh7DG234700 Rh7DG234800 Rh7DG235400 Rh7DG235500 Rh7DG235600
rosa_wichuraiana	Rw7G019490 Rw7G019520 Rw7G019560 Rw7G019600 Rw7G019610 Rw7G019660 Rw7G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	461
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	1 cut(s)	420
AflII	CTTAAG	1 cut(s)	227
AgsI	TTSAA	2 cut(s)	125, 443
AjnI	CCWGG	2 cut(s)	191, 474
AluBI	AGCT	4 cut(s)	37, 256, 329, 490
AluI	AGCT	4 cut(s)	37, 256, 329, 490
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	98
Alw44I	GTGCAC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	461
AoxI	GGCC	1 cut(s)	9
ApaLI	GTGCAC	1 cut(s)	80
ApeKI	GCWGC	2 cut(s)	454, 457
AspLEI	GCGC	1 cut(s)	525
AspS9I	GGNCC	1 cut(s)	382
AsuHPI	GGTGA	3 cut(s)	78, 358, 422
AvaII	GGWCC	1 cut(s)	382
BaeGI	GKGCMC	1 cut(s)	84
BauI	CACGAG	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	466, 469
BccI	CCATC	2 cut(s)	20, 393
BceAI	ACGGC	1 cut(s)	369
BciT130I	CCWGG	2 cut(s)	193, 476
BciVI	GTATCC	1 cut(s)	199
BclI	TGATCA	1 cut(s)	493
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	2 cut(s)	53, 535
BfrI	CTTAAG	1 cut(s)	227
BfuI	GTATCC	1 cut(s)	199
BisI	GCNGC	2 cut(s)	455, 458
BlsI	GCNGC	2 cut(s)	456, 459
Bme1390I	CCNGG	2 cut(s)	193, 476
Bme18I	GGWCC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	382
BmrFI	CCNGG	2 cut(s)	193, 476
BmsI	GCATC	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	356
BsaI	GGTCTC	1 cut(s)	98
BseBI	CCWGG	2 cut(s)	193, 476
BseGI	GGATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	425
BseSI	GKGCMC	1 cut(s)	84
BseXI	GCAGC	2 cut(s)	466, 469
BseYI	CCCAGC	1 cut(s)	108
BshFI	GGCC	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	11
Bso31I	GGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp1407I	TGTACA	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	466, 493
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	1 cut(s)	426
BspPI	GGATC	1 cut(s)	461
BspTI	CTTAAG	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	98
BsrGI	TGTACA	1 cut(s)	418
BssMI	GATC	2 cut(s)	466, 493
BssSI	CACGAG	1 cut(s)	311
Bst2BI	CACGAG	1 cut(s)	311
Bst2UI	CCWGG	2 cut(s)	193, 476
BstAFI	CTTAAG	1 cut(s)	227
BstAUI	TGTACA	1 cut(s)	418
BstDEI	CTNAG	1 cut(s)	434
BstF5I	GGATG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	525
BstKTI	GATC	2 cut(s)	469, 496
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	2 cut(s)	466, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	531
BstNI	CCWGG	2 cut(s)	193, 476
BstSCI	CCNGG	2 cut(s)	191, 474
BstSLI	GKGCMC	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	466, 469
BstV2I	GAAGAC	1 cut(s)	356
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BsuI	GTATCC	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	12
CfoI	GCGC	1 cut(s)	525
Cfr13I	GGNCC	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	419
CviAII	CATG	1 cut(s)	185
CviJI	RGCY	9 cut(s)	11, 37, 256, 329, 356, 416, 424, 460, 490
CviKI_1	RGCY	9 cut(s)	11, 37, 256, 329, 356, 416, 424, 460, 490
CviQI	GTAC	1 cut(s)	419
DdeI	CTNAG	1 cut(s)	434
DpnI	GATC	2 cut(s)	468, 495
DpnII	GATC	2 cut(s)	466, 493
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	382
Eco57I	CTGAAG	1 cut(s)	26
EcoRII	CCWGG	2 cut(s)	191, 474
FaeI	CATG	1 cut(s)	188
FaiI	YATR	5 cut(s)	96, 186, 206, 262, 498
FalI	AAGNNNNNCTT	4 cut(s)	258, 290, 318, 350
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	1 cut(s)	184
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	2 cut(s)	455, 458
Fsp4HI	GCNGC	2 cut(s)	455, 458
FspBI	CTAG	2 cut(s)	53, 535
GlaI	GCGC	1 cut(s)	524
GluI	GCNGC	2 cut(s)	455, 458
GsaI	CCCAGC	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	11
HhaI	GCGC	1 cut(s)	525
Hin1II	CATG	1 cut(s)	188
Hin6I	GCGC	1 cut(s)	523
HinP1I	GCGC	1 cut(s)	523
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	2 cut(s)	209, 436
HphI	GGTGA	3 cut(s)	78, 358, 422
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	340
Hpy188III	TCNNGA	7 cut(s)	29, 68, 143, 251, 266, 311, 440
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	26, 406
HpyCH4IV	ACGT	1 cut(s)	529
HpyCH4V	TGCA	2 cut(s)	82, 298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	531
HpyF3I	CTNAG	1 cut(s)	434
HpySE526I	ACGT	1 cut(s)	529
Hsp92II	CATG	1 cut(s)	188
HspAI	GCGC	1 cut(s)	523
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	2 cut(s)	466, 493
Lsp1109I	GCAGC	2 cut(s)	466, 469
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	2 cut(s)	53, 535
MaeII	ACGT	1 cut(s)	529
MaeIII	GTNAC	2 cut(s)	308, 428
MalI	GATC	2 cut(s)	468, 495
MboI	GATC	2 cut(s)	466, 493
MboII	GAAGA	4 cut(s)	11, 204, 245, 361
MfeI	CAATTG	1 cut(s)	518
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	3 cut(s)	174, 443, 518
MlyI	GAGTC	1 cut(s)	445
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	5 cut(s)	150, 160, 164, 373, 507
MseI	TTAA	3 cut(s)	228, 276, 405
MspCI	CTTAAG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	193, 476
MunI	CAATTG	1 cut(s)	518
MvaI	CCWGG	2 cut(s)	193, 476
MwoI	GCNNNNNNNGC	1 cut(s)	531
NdeII	GATC	2 cut(s)	466, 493
NlaIII	CATG	1 cut(s)	188
NmuCI	GTSAC	2 cut(s)	308, 428
PfeI	GAWTC	1 cut(s)	209
PfoI	TCCNGGA	2 cut(s)	191, 474
PkrI	GCNGC	2 cut(s)	456, 459
PleI	GAGTC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	191, 474
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	2 cut(s)	191, 474
PspPI	GGNCC	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	466
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
SaqAI	TTAA	3 cut(s)	228, 276, 405
SatI	GCNGC	2 cut(s)	455, 458
Sau3AI	GATC	2 cut(s)	466, 493
Sau96I	GGNCC	1 cut(s)	382
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	2 cut(s)	193, 476
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	9 cut(s)	39, 142, 204, 258, 276, 331, 435, 492, 532
SfaNI	GCATC	1 cut(s)	328
SinI	GGWCC	1 cut(s)	382
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	3 cut(s)	174, 443, 518
SspMI	CTAG	2 cut(s)	53, 535
StyD4I	CCNGG	2 cut(s)	191, 474
TaiI	ACGT	1 cut(s)	532
TaqI	TCGA	2 cut(s)	144, 219
TasI	AATT	3 cut(s)	174, 443, 518
TatI	WGTACW	1 cut(s)	418
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	3 cut(s)	228, 276, 405
Tru9I	TTAA	3 cut(s)	228, 276, 405
TseFI	GTSAC	2 cut(s)	308, 428
TseI	GCWGC	2 cut(s)	454, 457
Tsp45I	GTSAC	2 cut(s)	308, 428
TspDTI	ATGAA	1 cut(s)	500
Vha464I	CTTAAG	1 cut(s)	227
VneI	GTGCAC	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	382
XspI	CTAG	2 cut(s)	53, 535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.