Domain in histone families 1 and 5
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Linker_histone | PF00538 | 76 - 137 | 6.2e-11 | linker histone H1 and H5 family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 666 |
| AatII | GACGTC | 1 cut(s) | 190 |
| Acc16I | TGCGCA | 1 cut(s) | 1215 |
| Acc36I | ACCTGC | 1 cut(s) | 214 |
| AccI | GTMKAC | 1 cut(s) | 196 |
| AciI | CCGC | 4 cut(s) | 5, 15, 846, 1997 |
| AclWI | GGATC | 6 cut(s) | 171, 646, 985, 1420, 1636, 1680 |
| AcsI | RAATTY | 5 cut(s) | 807, 841, 1146, 2039, 2085 |
| AcuI | CTGAAG | 1 cut(s) | 312 |
| AcyI | GRCGYC | 1 cut(s) | 187 |
| AdeI | CACNNNGTG | 1 cut(s) | 1735 |
| AfaI | GTAC | 4 cut(s) | 999, 1104, 1787, 2094 |
| AflIII | ACRYGT | 2 cut(s) | 1354, 1523 |
| AjnI | CCWGG | 1 cut(s) | 1048 |
| AluBI | AGCT | 5 cut(s) | 103, 127, 379, 518, 1835 |
| AluI | AGCT | 5 cut(s) | 103, 127, 379, 518, 1835 |
| Alw26I | GTCTC | 1 cut(s) | 66 |
| AlwI | GGATC | 6 cut(s) | 171, 646, 985, 1420, 1636, 1680 |
| ApeKI | GCWGC | 6 cut(s) | 692, 904, 907, 916, 1216, 1579 |
| ApoI | RAATTY | 5 cut(s) | 807, 841, 1146, 2039, 2085 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1878 |
| AspLEI | GCGC | 1 cut(s) | 1216 |
| AspS9I | GGNCC | 1 cut(s) | 1889 |
| AsuHPI | GGTGA | 4 cut(s) | 455, 760, 1405, 1621 |
| AvaII | GGWCC | 1 cut(s) | 1889 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 981, 1013, 1086, 1118 |
| BbsI | GAAGAC | 2 cut(s) | 356, 491 |
| BbvI | GCAGC | 6 cut(s) | 679, 916, 919, 928, 1228, 1591 |
| BccI | CCATC | 2 cut(s) | 112, 1130 |
| BceAI | ACGGC | 1 cut(s) | 224 |
| BciT130I | CCWGG | 1 cut(s) | 1050 |
| BcoDI | GTCTC | 1 cut(s) | 66 |
| BfaI | CTAG | 1 cut(s) | 456 |
| BfmI | CTRYAG | 2 cut(s) | 1206, 1485 |
| BfuAI | ACCTGC | 1 cut(s) | 214 |
| BisI | GCNGC | 8 cut(s) | 6, 693, 905, 908, 917, 1217, 1580, 1998 |
| BlsI | GCNGC | 8 cut(s) | 7, 694, 906, 909, 918, 1218, 1581, 1999 |
| Bme1390I | CCNGG | 1 cut(s) | 1050 |
| Bme18I | GGWCC | 1 cut(s) | 1889 |
| BmgT120I | GGNCC | 1 cut(s) | 1889 |
| BmrFI | CCNGG | 1 cut(s) | 1050 |
| BmsI | GCATC | 3 cut(s) | 766, 1201, 1984 |
| BpiI | GAAGAC | 2 cut(s) | 356, 491 |
| BpmI | CTGGAG | 4 cut(s) | 627, 966, 1071, 1617 |
| BpuEI | CTTGAG | 1 cut(s) | 379 |
| BsaAI | YACGTR | 1 cut(s) | 1526 |
| BsaBI | GATNNNNATC | 1 cut(s) | 25 |
| BsaHI | GRCGYC | 1 cut(s) | 187 |
| BsaI | GGTCTC | 1 cut(s) | 66 |
| BsaWI | WCCGGW | 1 cut(s) | 160 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 384, 414, 625, 655, 1044, 1074, 1854, 1884 |
| Bse1I | ACTGG | 1 cut(s) | 640 |
| Bse8I | GATNNNNATC | 1 cut(s) | 25 |
| BseBI | CCWGG | 1 cut(s) | 1050 |
| BseGI | GGATG | 1 cut(s) | 226 |
| BseJI | GATNNNNATC | 1 cut(s) | 25 |
| BseMII | CTCAG | 6 cut(s) | 528, 558, 923, 1118, 1968, 2061 |
| BseNI | ACTGG | 1 cut(s) | 640 |
| BseRI | GAGGAG | 2 cut(s) | 75, 278 |
| BseXI | GCAGC | 6 cut(s) | 679, 916, 919, 928, 1228, 1591 |
| BseYI | CCCAGC | 1 cut(s) | 32 |
| BsgI | GTGCAG | 2 cut(s) | 1389, 1545 |
| BsiSI | CCGG | 1 cut(s) | 161 |
| BslFI | GGGAC | 2 cut(s) | 455, 851 |
| BsmAI | GTCTC | 1 cut(s) | 66 |
| BsmFI | GGGAC | 2 cut(s) | 455, 851 |
| Bso31I | GGTCTC | 1 cut(s) | 66 |
| Bsp1407I | TGTACA | 2 cut(s) | 997, 2092 |
| Bsp143I | GATC | 9 cut(s) | 79, 163, 223, 638, 733, 977, 1412, 1628, 1672 |
| BspACI | CCGC | 4 cut(s) | 5, 15, 846, 1997 |
| BspCNI | CTCAG | 6 cut(s) | 527, 559, 924, 1119, 1969, 2062 |
| BspMAI | CTGCAG | 1 cut(s) | 1489 |
| BspMI | ACCTGC | 1 cut(s) | 214 |
| BspPI | GGATC | 6 cut(s) | 171, 646, 985, 1420, 1636, 1680 |
| BspQI | GCTCTTC | 2 cut(s) | 1314, 1587 |
| BspTNI | GGTCTC | 1 cut(s) | 66 |
| BsrGI | TGTACA | 2 cut(s) | 997, 2092 |
| BsrI | ACTGG | 1 cut(s) | 640 |
| BssMI | GATC | 9 cut(s) | 79, 163, 223, 638, 733, 977, 1412, 1628, 1672 |
| BssNI | GRCGYC | 1 cut(s) | 187 |
| Bst2UI | CCWGG | 1 cut(s) | 1050 |
| Bst4CI | ACNGT | 8 cut(s) | 332, 609, 968, 1173, 1619, 1785, 1854, 2005 |
| Bst6I | CTCTTC | 3 cut(s) | 52, 1314, 1587 |
| BstACI | GRCGYC | 1 cut(s) | 187 |
| BstAUI | TGTACA | 2 cut(s) | 997, 2092 |
| BstBAI | YACGTR | 1 cut(s) | 1526 |
| BstC8I | GCNNGC | 2 cut(s) | 105, 129 |
| BstDEI | CTNAG | 6 cut(s) | 514, 567, 932, 1127, 1977, 2070 |
| BstF5I | GGATG | 1 cut(s) | 226 |
| BstHHI | GCGC | 1 cut(s) | 1216 |
| BstKTI | GATC | 9 cut(s) | 82, 166, 226, 641, 736, 980, 1415, 1631, 1675 |
| BstMAI | GTCTC | 1 cut(s) | 66 |
| BstMBI | GATC | 9 cut(s) | 79, 163, 223, 638, 733, 977, 1412, 1628, 1672 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 14, 589, 698, 913, 916, 1874, 1981 |
| BstNI | CCWGG | 1 cut(s) | 1050 |
| BstNSI | RCATGY | 1 cut(s) | 1358 |
| BstSCI | CCNGG | 1 cut(s) | 1048 |
| BstSFI | CTRYAG | 2 cut(s) | 1206, 1485 |
| BstV1I | GCAGC | 6 cut(s) | 679, 916, 919, 928, 1228, 1591 |
| BstV2I | GAAGAC | 2 cut(s) | 356, 491 |
| BstX2I | RGATCY | 4 cut(s) | 638, 977, 1412, 1628 |
| BstYI | RGATCY | 4 cut(s) | 638, 977, 1412, 1628 |
| BtsCI | GGATG | 1 cut(s) | 226 |
| BtsI | GCAGTG | 2 cut(s) | 1494, 2111 |
| BtsIMutI | CAGTG | 3 cut(s) | 1178, 1494, 2111 |
| BveI | ACCTGC | 1 cut(s) | 214 |
| Cac8I | GCNNGC | 2 cut(s) | 105, 129 |
| CfoI | GCGC | 1 cut(s) | 1216 |
| Cfr13I | GGNCC | 1 cut(s) | 1889 |
| Csp6I | GTAC | 4 cut(s) | 998, 1103, 1786, 2093 |
| CviAII | CATG | 6 cut(s) | 347, 1238, 1355, 1387, 1859, 2051 |
| CviQI | GTAC | 4 cut(s) | 998, 1103, 1786, 2093 |
| DdeI | CTNAG | 6 cut(s) | 514, 567, 932, 1127, 1977, 2070 |
| DpnI | GATC | 9 cut(s) | 81, 165, 225, 640, 735, 979, 1414, 1630, 1674 |
| DpnII | GATC | 9 cut(s) | 79, 163, 223, 638, 733, 977, 1412, 1628, 1672 |
| DraI | TTTAAA | 1 cut(s) | 2124 |
| DraIII | CACNNNGTG | 1 cut(s) | 1735 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 666 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 666 |
| Eam1104I | CTCTTC | 3 cut(s) | 52, 1314, 1587 |
| EarI | CTCTTC | 3 cut(s) | 52, 1314, 1587 |
| Eco31I | GGTCTC | 1 cut(s) | 66 |
| Eco32I | GATATC | 1 cut(s) | 178 |
| Eco47I | GGWCC | 1 cut(s) | 1889 |
| Eco57I | CTGAAG | 1 cut(s) | 312 |
| EcoRII | CCWGG | 1 cut(s) | 1048 |
| EcoRV | GATATC | 1 cut(s) | 178 |
| FaeI | CATG | 6 cut(s) | 350, 1241, 1358, 1390, 1862, 2054 |
| FaqI | GGGAC | 2 cut(s) | 455, 851 |
| FatI | CATG | 6 cut(s) | 346, 1237, 1354, 1386, 1858, 2050 |
| FauNDI | CATATG | 1 cut(s) | 1254 |
| FblI | GTMKAC | 1 cut(s) | 196 |
| Fnu4HI | GCNGC | 8 cut(s) | 6, 693, 905, 908, 917, 1217, 1580, 1998 |
| FokI | GGATG | 1 cut(s) | 213 |
| Fsp4HI | GCNGC | 8 cut(s) | 6, 693, 905, 908, 917, 1217, 1580, 1998 |
| FspBI | CTAG | 1 cut(s) | 456 |
| FspI | TGCGCA | 1 cut(s) | 1215 |
| GlaI | GCGC | 1 cut(s) | 1215 |
| GluI | GCNGC | 8 cut(s) | 6, 693, 905, 908, 917, 1217, 1580, 1998 |
| GsaI | CCCAGC | 1 cut(s) | 36 |
| GsuI | CTGGAG | 4 cut(s) | 627, 966, 1071, 1617 |
| HapII | CCGG | 1 cut(s) | 161 |
| HhaI | GCGC | 1 cut(s) | 1216 |
| Hin1I | GRCGYC | 1 cut(s) | 187 |
| Hin1II | CATG | 6 cut(s) | 350, 1241, 1358, 1390, 1862, 2054 |
| Hin6I | GCGC | 1 cut(s) | 1214 |
| HinP1I | GCGC | 1 cut(s) | 1214 |
| HincII | GTYRAC | 2 cut(s) | 288, 625 |
| HindII | GTYRAC | 2 cut(s) | 288, 625 |
| HindIII | AAGCTT | 1 cut(s) | 101 |
| HinfI | GANTC | 8 cut(s) | 198, 247, 361, 446, 487, 767, 934, 1154 |
| HpaII | CCGG | 1 cut(s) | 161 |
| HphI | GGTGA | 4 cut(s) | 455, 760, 1405, 1621 |
| Hpy166II | GTNNAC | 4 cut(s) | 197, 288, 625, 2093 |
| Hpy188I | TCNGA | 8 cut(s) | 139, 168, 492, 1248, 1516, 1921, 2037, 2071 |
| Hpy8I | GTNNAC | 4 cut(s) | 197, 288, 625, 2093 |
| Hpy99I | CGWCG | 1 cut(s) | 189 |
| HpyAV | CCTTC | 3 cut(s) | 47, 487, 1384 |
| HpyCH4III | ACNGT | 8 cut(s) | 332, 609, 968, 1173, 1619, 1785, 1854, 2005 |
| HpyCH4IV | ACGT | 2 cut(s) | 187, 1525 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 14, 589, 698, 913, 916, 1874, 1981 |
| HpyF3I | CTNAG | 6 cut(s) | 514, 567, 932, 1127, 1977, 2070 |
| HpySE526I | ACGT | 2 cut(s) | 187, 1525 |
| Hsp92I | GRCGYC | 1 cut(s) | 187 |
| Hsp92II | CATG | 6 cut(s) | 350, 1241, 1358, 1390, 1862, 2054 |
| HspAI | GCGC | 1 cut(s) | 1214 |
| Kzo9I | GATC | 9 cut(s) | 79, 163, 223, 638, 733, 977, 1412, 1628, 1672 |
| LguI | GCTCTTC | 2 cut(s) | 1314, 1587 |
| Lsp1109I | GCAGC | 6 cut(s) | 679, 916, 919, 928, 1228, 1591 |
| LweI | GCATC | 3 cut(s) | 766, 1201, 1984 |
| MaeI | CTAG | 1 cut(s) | 456 |
| MaeII | ACGT | 2 cut(s) | 187, 1525 |
| MaeIII | GTNAC | 5 cut(s) | 562, 889, 1114, 1480, 1854 |
| MalI | GATC | 9 cut(s) | 81, 165, 225, 640, 735, 979, 1414, 1630, 1674 |
| MboI | GATC | 9 cut(s) | 79, 163, 223, 638, 733, 977, 1412, 1628, 1672 |
| MfeI | CAATTG | 4 cut(s) | 258, 696, 1676, 1802 |
| MflI | RGATCY | 4 cut(s) | 638, 977, 1412, 1628 |
| MlyI | GAGTC | 5 cut(s) | 192, 370, 481, 943, 1148 |
| MmeI | TCCRAC | 2 cut(s) | 455, 2062 |
| MnlI | CCTC | 9 cut(s) | 53, 154, 256, 268, 381, 579, 1663, 1888, 2065 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1878 |
| MseI | TTAA | 4 cut(s) | 66, 798, 1952, 2123 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1391 |
| MspI | CCGG | 1 cut(s) | 161 |
| MspR9I | CCNGG | 1 cut(s) | 1050 |
| MunI | CAATTG | 4 cut(s) | 258, 696, 1676, 1802 |
| MvaI | CCWGG | 1 cut(s) | 1050 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 14, 589, 698, 913, 916, 1874, 1981 |
| NdeI | CATATG | 1 cut(s) | 1254 |
| NdeII | GATC | 9 cut(s) | 79, 163, 223, 638, 733, 977, 1412, 1628, 1672 |
| NlaIII | CATG | 6 cut(s) | 350, 1241, 1358, 1390, 1862, 2054 |
| NmuCI | GTSAC | 2 cut(s) | 562, 889 |
| NsbI | TGCGCA | 1 cut(s) | 1215 |
| NspI | RCATGY | 1 cut(s) | 1358 |
| PciI | ACATGT | 1 cut(s) | 1354 |
| PciSI | GCTCTTC | 2 cut(s) | 1314, 1587 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1878 |
| PfeI | GAWTC | 3 cut(s) | 247, 446, 767 |
| PkrI | GCNGC | 8 cut(s) | 7, 694, 906, 909, 918, 1218, 1581, 1999 |
| PleI | GAGTC | 5 cut(s) | 192, 369, 481, 942, 1148 |
| PpsI | GAGTC | 5 cut(s) | 192, 369, 481, 942, 1148 |
| Ppu21I | YACGTR | 1 cut(s) | 1526 |
| PscI | ACATGT | 1 cut(s) | 1354 |
| Psp6I | CCWGG | 1 cut(s) | 1048 |
| PspFI | CCCAGC | 1 cut(s) | 32 |
| PspGI | CCWGG | 1 cut(s) | 1048 |
| PspPI | GGNCC | 1 cut(s) | 1889 |
| PstI | CTGCAG | 1 cut(s) | 1489 |
| PsuI | RGATCY | 4 cut(s) | 638, 977, 1412, 1628 |
| RsaI | GTAC | 4 cut(s) | 999, 1104, 1787, 2094 |
| RsaNI | GTAC | 4 cut(s) | 998, 1103, 1786, 2093 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1391 |
| SapI | GCTCTTC | 2 cut(s) | 1314, 1587 |
| SaqAI | TTAA | 4 cut(s) | 66, 798, 1952, 2123 |
| SatI | GCNGC | 8 cut(s) | 6, 693, 905, 908, 917, 1217, 1580, 1998 |
| Sau3AI | GATC | 9 cut(s) | 79, 163, 223, 638, 733, 977, 1412, 1628, 1672 |
| Sau96I | GGNCC | 1 cut(s) | 1889 |
| SchI | GAGTC | 5 cut(s) | 192, 370, 481, 943, 1148 |
| ScrFI | CCNGG | 1 cut(s) | 1050 |
| SfaNI | GCATC | 3 cut(s) | 766, 1201, 1984 |
| SfcI | CTRYAG | 2 cut(s) | 1206, 1485 |
| SinI | GGWCC | 1 cut(s) | 1889 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1391 |
| SmlI | CTYRAG | 1 cut(s) | 358 |
| SmoI | CTYRAG | 1 cut(s) | 358 |
| SsiI | CCGC | 4 cut(s) | 5, 15, 846, 1997 |
| SspMI | CTAG | 1 cut(s) | 456 |
| StyD4I | CCNGG | 1 cut(s) | 1048 |
| TaaI | ACNGT | 8 cut(s) | 332, 609, 968, 1173, 1619, 1785, 1854, 2005 |
| TaiI | ACGT | 2 cut(s) | 190, 1528 |
| TaqI | TCGA | 1 cut(s) | 1062 |
| TaqII | GACCGA | 1 cut(s) | 1872 |
| TatI | WGTACW | 3 cut(s) | 997, 1102, 2092 |
| TauI | GCSGC | 2 cut(s) | 8, 2000 |
| TfiI | GAWTC | 3 cut(s) | 247, 446, 767 |
| Tru1I | TTAA | 4 cut(s) | 66, 798, 1952, 2123 |
| Tru9I | TTAA | 4 cut(s) | 66, 798, 1952, 2123 |
| TscAI | CASTG | 3 cut(s) | 1178, 1494, 2111 |
| TseFI | GTSAC | 2 cut(s) | 562, 889 |
| TseI | GCWGC | 6 cut(s) | 692, 904, 907, 916, 1216, 1579 |
| Tsp45I | GTSAC | 2 cut(s) | 562, 889 |
| TspRI | CASTG | 3 cut(s) | 1178, 1494, 2111 |
| VpaK11BI | GGWCC | 1 cut(s) | 1889 |
| XapI | RAATTY | 5 cut(s) | 807, 841, 1146, 2039, 2085 |
| XbaI | TCTAGA | 1 cut(s) | 455 |
| XceI | RCATGY | 1 cut(s) | 1358 |
| XmiI | GTMKAC | 1 cut(s) | 196 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1878 |
| XspI | CTAG | 1 cut(s) | 456 |
| ZraI | GACGTC | 1 cut(s) | 188 |