Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000564

Physical Location & Seq

Genomic Coordinates Reverse (-)

33998133 .. 33998618

Gene Structure 486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g44101.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCAGTTTGGTCTACAAATCTGTCCTCTACCACTACCACCTCAGGCTCTGTGGAAGCAGTTCTTTTAGATGATGGAAACCTTGTCTTGAGAGCTGGGTCTAGCTCATCCGATTTTTTATGGCAAAGCTTTGATCATCCAGCCAACACTTGGCTACCAGGAAGTAAACTAGGATTCAACAATGTTACCAAACAAACCCGAATGCTCACTTCATGGAAGAATGATGAGAACCCTGCACCGGGTTTGTTCTCTCTTCAGCTAGACCCAAATGGAAGCAACTCACTTATCATTATGTTGAATAAGTCTAGACAGTATTGGAGCAGTGGATCTTGGGATGATAGTCTTCATACTCTCAGCTCGAGTCCTGAAATGAGCCCCAATAGTATTATAAGTCCACTCAAGCTATTCTCGCGTCGTAACAACTGTTTGAACATTAATTTGTACAATTTTGAGGTGAATACAACTCAGTTAACGATCTACCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

162

Amino Acids

17.89

Weight (kDa)

5.83

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	2 - 73	5.4e-22	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000564)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica	MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica	Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis	pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis	RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata	RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora	Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii	Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa	Rorug01G0022300 Rorug04G0061600
rosa_samantha	Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana	Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	389
AccB7I	CCANNNNNTGG	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	14
AccII	CGCG	1 cut(s)	412
AclWI	GGATC	1 cut(s)	334
AcuI	CTGAAG	1 cut(s)	239
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	3 cut(s)	150, 238, 239
AgsI	TTSAA	3 cut(s)	178, 298, 430
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	6 cut(s)	95, 105, 129, 259, 357, 403
AluI	AGCT	6 cut(s)	95, 105, 129, 259, 357, 403
AlwI	GGATC	1 cut(s)	334
AlwNI	CAGNNNCTG	1 cut(s)	50
Ama87I	CYCGRG	1 cut(s)	358
AseI	ATTAAT	1 cut(s)	435
Asp700I	GAANNNNTTC	1 cut(s)	60
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	1 cut(s)	466
AvaI	CYCGRG	1 cut(s)	358
AxyI	CCTNAGG	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	377
BbsI	GAAGAC	1 cut(s)	335
BccI	CCATC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	159
BclI	TGATCA	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	240
BfaI	CTAG	4 cut(s)	102, 170, 260, 306
Bme1390I	CCNGG	2 cut(s)	159, 240
BmeT110I	CYCGRG	1 cut(s)	358
BmrFI	CCNGG	2 cut(s)	159, 240
BpiI	GAAGAC	1 cut(s)	335
BpuEI	CTTGAG	2 cut(s)	109, 383
BpuMI	CCSGG	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 238, 239
Bse21I	CCTNAGG	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	159
BseGI	GGATG	3 cut(s)	107, 136, 340
BseLI	CCNNNNNNNGG	3 cut(s)	150, 238, 239
BseMII	CTCAG	3 cut(s)	57, 367, 479
BseYI	CCCAGC	1 cut(s)	95
BsgI	GTGCAG	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	412
BsiHKCI	CYCGRG	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	239
BslI	CCNNNNNNNGG	3 cut(s)	150, 238, 239
BsmI	GAATGC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	358
Bsp1286I	GDGCHC	1 cut(s)	377
Bsp1407I	TGTACA	1 cut(s)	441
Bsp143I	GATC	3 cut(s)	133, 326, 474
BspCNI	CTCAG	3 cut(s)	56, 366, 478
BspFNI	CGCG	1 cut(s)	412
BspPI	GGATC	1 cut(s)	334
BsrGI	TGTACA	1 cut(s)	441
BssMI	GATC	3 cut(s)	133, 326, 474
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	312, 425
Bst6I	CTCTTC	1 cut(s)	258
BstAUI	TGTACA	1 cut(s)	441
BstDEI	CTNAG	3 cut(s)	43, 353, 465
BstF5I	GGATG	3 cut(s)	107, 136, 340
BstFNI	CGCG	1 cut(s)	412
BstKTI	GATC	3 cut(s)	136, 329, 477
BstMBI	GATC	3 cut(s)	133, 326, 474
BstMWI	GCNNNNNNNGC	1 cut(s)	409
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	2 cut(s)	157, 238
BstUI	CGCG	1 cut(s)	412
BstV2I	GAAGAC	1 cut(s)	335
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
Bsu36I	CCTNAGG	1 cut(s)	43
BtsCI	GGATG	3 cut(s)	107, 136, 340
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	2 cut(s)	328, 481
CaiI	CAGNNNCTG	1 cut(s)	50
CseI	GACGC	1 cut(s)	401
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	1 cut(s)	213
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	3 cut(s)	43, 353, 465
DpnI	GATC	3 cut(s)	135, 328, 476
DpnII	GATC	3 cut(s)	133, 326, 474
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	377
Eco57I	CTGAAG	1 cut(s)	239
Eco81I	CCTNAGG	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	377
FaeI	CATG	1 cut(s)	216
FaiI	YATR	5 cut(s)	121, 214, 293, 348, 389
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FatI	CATG	1 cut(s)	212
FbaI	TGATCA	1 cut(s)	133
FblI	GTMKAC	1 cut(s)	14
FokI	GGATG	3 cut(s)	94, 123, 347
FriOI	GRGCYC	1 cut(s)	377
FspBI	CTAG	4 cut(s)	102, 170, 260, 306
GsaI	CCCAGC	1 cut(s)	99
HapII	CCGG	1 cut(s)	239
HgaI	GACGC	1 cut(s)	401
Hin1II	CATG	1 cut(s)	216
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	2 cut(s)	174, 361
HpaI	GTTAAC	1 cut(s)	471
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	1 cut(s)	466
Hpy166II	GTNNAC	4 cut(s)	15, 167, 395, 471
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	3 cut(s)	88, 306, 365
Hpy8I	GTNNAC	4 cut(s)	15, 167, 395, 471
Hpy99I	CGWCG	1 cut(s)	417
HpyCH4III	ACNGT	2 cut(s)	312, 425
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	409
HpyF3I	CTNAG	3 cut(s)	43, 353, 465
Hsp92II	CATG	1 cut(s)	216
Ksp22I	TGATCA	1 cut(s)	133
KspAI	GTTAAC	1 cut(s)	471
Kzo9I	GATC	3 cut(s)	133, 326, 474
LmnI	GCTCC	1 cut(s)	318
LpnPI	CCDG	8 cut(s)	30, 81, 144, 153, 171, 246, 252, 378
MaeI	CTAG	4 cut(s)	102, 170, 260, 306
MaeIII	GTNAC	2 cut(s)	184, 416
MalI	GATC	3 cut(s)	135, 328, 476
MboI	GATC	3 cut(s)	133, 326, 474
MboII	GAAGA	3 cut(s)	229, 245, 335
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	1 cut(s)	377
MluCI	AATT	2 cut(s)	436, 445
MlyI	GAGTC	1 cut(s)	370
MnlI	CCTC	3 cut(s)	37, 52, 445
MroXI	GAANNNNTTC	1 cut(s)	60
MseI	TTAA	2 cut(s)	435, 470
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	159, 240
Mva1269I	GAATGC	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	159
MvnI	CGCG	1 cut(s)	412
MwoI	GCNNNNNNNGC	1 cut(s)	409
NciI	CCSGG	1 cut(s)	240
NdeII	GATC	3 cut(s)	133, 326, 474
NlaIII	CATG	1 cut(s)	216
PaeR7I	CTCGAG	1 cut(s)	358
PctI	GAATGC	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	174
PflMI	CCANNNNNTGG	1 cut(s)	150
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
PshBI	ATTAAT	1 cut(s)	435
PsiI	TTATAA	1 cut(s)	389
Psp6I	CCWGG	1 cut(s)	157
PspFI	CCCAGC	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	157
PspXI	VCTCGAGB	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	326
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
SaqAI	TTAA	2 cut(s)	435, 470
Sau3AI	GATC	3 cut(s)	133, 326, 474
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	2 cut(s)	159, 240
SduI	GDGCHC	1 cut(s)	377
SetI	ASST	9 cut(s)	44, 84, 97, 107, 131, 261, 359, 405, 456
Sfr274I	CTCGAG	1 cut(s)	358
SlaI	CTCGAG	1 cut(s)	358
SmlI	CTYRAG	3 cut(s)	88, 358, 398
SmoI	CTYRAG	3 cut(s)	88, 358, 398
Sse9I	AATT	2 cut(s)	436, 445
SspMI	CTAG	4 cut(s)	102, 170, 260, 306
StyD4I	CCNGG	2 cut(s)	157, 238
TaaI	ACNGT	2 cut(s)	312, 425
TaqI	TCGA	1 cut(s)	359
TasI	AATT	2 cut(s)	436, 445
TatI	WGTACW	1 cut(s)	441
TfiI	GAWTC	1 cut(s)	174
Tru1I	TTAA	2 cut(s)	435, 470
Tru9I	TTAA	2 cut(s)	435, 470
TscAI	CASTG	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	201, 335
TspRI	CASTG	1 cut(s)	328
Van91I	CCANNNNNTGG	1 cut(s)	150
VspI	ATTAAT	1 cut(s)	435
XbaI	TCTAGA	1 cut(s)	305
XcmI	CCANNNNNNNNNTGG	1 cut(s)	147
XhoI	CTCGAG	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	60
XspI	CTAG	4 cut(s)	102, 170, 260, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.