Rh2BG564200

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
77551783 .. 77555457
3675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG564200.1

Sequence Viewer

Length: 1389 bp
ATGGTTGTGGGGAGCTGTACACCCGCCCAACTCCTACAAATTTGCTTGTCTGCAAGTTTTTTATGCAGCCAATCCATGGATACCAAAACCAACCTAATGAAGTCCATGGTTTCTGTTCTTTTGTTATGCCTATCTCTCAAAACTCATATCTCTCTTGCCGCTGACACCATCACTGTAAACCAATCTCTCTCTGGTGATCAAACCATTGTTTCAGCAGGTGGAGTTTTTGAACTGGGTTTCTTCAATCCAGGTAACTCAAAGTACTATATAGGCATTTGGTACAGGAGAAGTCCAAGAAACGTTGTCTGGGTGGCGAATAGGGAGCAACCAGTCTCCGACACGTCATCAGAATTGAGGATCTCAGATGGTAATTTGGTTCTGTTTAGTGAGTCCAAAAGTCCAATTTGGTCCACAAATGTCTCCACATCAGGTACATCTGTTCACGCAGTTCTTTTTGATAACGGGAACCTTGTTTTAAGAGCTGGGAATTCATCCCAGCCTTTATGGCAGAGTTTTGATCACCCAACTGACACTTTGCTAGCAGAAGGTAGAATTGGGTTCAGTTCTATTACTAAACAAAAACAAAGTTTGACTTCATGGAAGAGTTTAGAGGATCCTGCACCAGGTCTCTATTCTATTGAGCTAGACCCAAATGAAACCAGCTCATACATTGTGTTGTGGAATGGGTCTAGACAGTATTGGACCAGTGGACCATGGGATGTAAAGACTCGGAGATTCAGTTTGATTCCTGAGATGAGGCTTAATTACATCTTCAATTTCAGCTATGTGACAAACAAAAACGAAAGCTATTTCACCTATTCTCTTTATGATCCTACAATCTTGTCTAGATGTCTGATCGATGTCTCGGGGCAAGTTAAGCAACTGTCATGGTTGAGACCTTCCATAGACTGGAAATTGTTTTGGTCTCAACCAAGACAACAATGCAAAGTCTATGCCTTTTGTGGGGCTTTTGGCAATTGCAATGAGAAGTCCTCACCCTTCTGTAATTGTTTGAATGGTTTTGAGCCGAAATCGAAGGTGGATTGGGATTTGCAGGATTATTCTGGTGGGTGTTCAAGAAGAACTGATCTGTATTCTGGGAATGCTACTAGTGATAATGCGGAAAAAGACCGATTTCTAGACATGCCTAGCATGTCATTACCTGAAAATCAAGAGTCTGTAGATGCTGCGAGTATTGTTCAATGTGAATCAATCTGCTTAAATAACCAATCTTGCACTGCTTATGCTTATGACAGCAATGGATGCCAAATTTGGATTGGAGATCTCTTCAATCTGGAACAACTCACGGGAGATGACAGTAATGGAACAACATTGTACCTCAGACTTGCAGCTTCCGAGTTTAAGAATTTTAAGAGTAATGCAGATTGA

Protein Analysis

462

Amino Acids

51.57

Weight (kDa)

5.13

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 101 - 201 6.7e-34 D-mannose binding lectin
S_locus_glycop PF00954 234 - 345 6.3e-31 S-locus glycoprotein domain
PAN_2 PF08276 375 - 431 7.7e-14 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa Rorug01G0022300 Rorug04G0061600
rosa_samantha Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 206
Acc36I ACCTGC 1 cut(s) 206
AccB7I CCANNNNNTGG 2 cut(s) 76, 909
AciI CCGC 3 cut(s) 24, 159, 1121
AclI AACGTT 1 cut(s) 300
AclWI GGATC 4 cut(s) 365, 608, 621, 824
AcsI RAATTY 4 cut(s) 39, 487, 1269, 1366
AfaI GTAC 5 cut(s) 19, 263, 281, 433, 1337
AfiI CCNNNNNNNGG 4 cut(s) 76, 623, 909, 963
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 7 cut(s) 230, 244, 775, 1015, 1077, 1202, 1291
AhlI ACTAGT 1 cut(s) 1109
AjiI CACGTC 1 cut(s) 342
AjnI CCWGG 2 cut(s) 247, 622
AjuI GAANNNNNNNTTGG 2 cut(s) 537, 569
AluBI AGCT 7 cut(s) 15, 482, 643, 663, 783, 807, 1352
AluI AGCT 7 cut(s) 15, 482, 643, 663, 783, 807, 1352
Alw26I GTCTC 6 cut(s) 337, 424, 632, 868, 889, 930
AlwI GGATC 4 cut(s) 365, 608, 621, 824
Ama87I CYCGRG 1 cut(s) 865
ApeKI GCWGC 3 cut(s) 66, 1187, 1349
ApoI RAATTY 4 cut(s) 39, 487, 1269, 1366
AspS9I GGNCC 3 cut(s) 408, 702, 710
AsuHPI GGTGA 4 cut(s) 206, 512, 805, 987
AsuNHI GCTAGC 1 cut(s) 538
AvaI CYCGRG 1 cut(s) 865
AvaII GGWCC 3 cut(s) 408, 702, 710
BaeI ACNNNNGTAYC 2 cut(s) 423, 456
BamHI GGATCC 1 cut(s) 613
BbvI GCAGC 3 cut(s) 78, 1174, 1361
BccI CCATC 2 cut(s) 176, 359
BciT130I CCWGG 2 cut(s) 249, 624
BciVI GTATCC 1 cut(s) 73
BclI TGATCA 2 cut(s) 196, 517
BcoDI GTCTC 6 cut(s) 337, 424, 632, 868, 889, 930
BcuI ACTAGT 1 cut(s) 1109
BfaI CTAG 7 cut(s) 539, 644, 690, 846, 1110, 1139, 1149
BfmI CTRYAG 1 cut(s) 1179
BfuAI ACCTGC 1 cut(s) 206
BfuI GTATCC 1 cut(s) 73
BglI GCCNNNNNGGC 1 cut(s) 505
BglII AGATCT 1 cut(s) 1282
BisI GCNGC 4 cut(s) 67, 159, 1188, 1350
BlsI GCNGC 4 cut(s) 68, 160, 1189, 1351
BmcAI AGTACT 1 cut(s) 263
Bme1390I CCNGG 2 cut(s) 249, 624
Bme18I GGWCC 3 cut(s) 408, 702, 710
BmeT110I CYCGRG 1 cut(s) 865
BmgBI CACGTC 1 cut(s) 342
BmgT120I GGNCC 3 cut(s) 408, 702, 710
BmiI GGNNCC 2 cut(s) 467, 615
BmrFI CCNGG 2 cut(s) 249, 624
BmrI ACTGGG 1 cut(s) 242
BmsI GCATC 2 cut(s) 1174, 1253
BmtI GCTAGC 1 cut(s) 542
BmuI ACTGGG 1 cut(s) 242
BplI GAGNNNNNCTC 2 cut(s) 977, 1009
Bsa29I ATCGAT 1 cut(s) 858
BsaI GGTCTC 3 cut(s) 632, 889, 930
BsaJI CCNNGG 3 cut(s) 75, 105, 713
BsaXI ACNNNNNCTCC 2 cut(s) 724, 754
Bsc4I CCNNNNNNNGG 4 cut(s) 76, 623, 909, 963
Bse1I ACTGG 4 cut(s) 237, 329, 705, 914
Bse3DI GCAATG 2 cut(s) 988, 1264
BseBI CCWGG 2 cut(s) 249, 624
BseCI ATCGAT 1 cut(s) 858
BseDI CCNNGG 3 cut(s) 75, 105, 713
BseGI GGATG 3 cut(s) 491, 724, 1268
BseLI CCNNNNNNNGG 4 cut(s) 76, 623, 909, 963
BseMI GCAATG 2 cut(s) 988, 1264
BseMII CTCAG 3 cut(s) 375, 741, 1354
BseNI ACTGG 4 cut(s) 237, 329, 705, 914
BseXI GCAGC 3 cut(s) 78, 1174, 1361
BseYI CCCAGC 2 cut(s) 482, 495
BsgI GTGCAG 1 cut(s) 603
BshVI ATCGAT 1 cut(s) 858
BsiHKCI CYCGRG 1 cut(s) 865
BslI CCNNNNNNNGG 4 cut(s) 76, 623, 909, 963
BsmAI GTCTC 6 cut(s) 337, 424, 632, 868, 889, 930
BsmI GAATGC 1 cut(s) 1108
Bso31I GGTCTC 3 cut(s) 632, 889, 930
BsoBI CYCGRG 1 cut(s) 865
Bsp1407I TGTACA 1 cut(s) 17
Bsp143I GATC 8 cut(s) 196, 357, 517, 613, 829, 855, 1087, 1282
Bsp19I CCATGG 3 cut(s) 75, 105, 713
BspACI CCGC 3 cut(s) 24, 159, 1121
BspCNI CTCAG 3 cut(s) 374, 742, 1353
BspDI ATCGAT 1 cut(s) 858
BspLI GGNNCC 2 cut(s) 467, 615
BspMI ACCTGC 1 cut(s) 206
BspOI GCTAGC 1 cut(s) 542
BspPI GGATC 4 cut(s) 365, 608, 621, 824
BspTNI GGTCTC 3 cut(s) 632, 889, 930
BsrDI GCAATG 2 cut(s) 988, 1264
BsrGI TGTACA 1 cut(s) 17
BsrI ACTGG 4 cut(s) 237, 329, 705, 914
BssECI CCNNGG 3 cut(s) 75, 105, 713
BssMI GATC 8 cut(s) 196, 357, 517, 613, 829, 855, 1087, 1282
BssT1I CCWWGG 3 cut(s) 75, 105, 713
Bst2UI CCWGG 2 cut(s) 249, 624
Bst4CI ACNGT 4 cut(s) 175, 696, 885, 1319
Bst6I CTCTTC 2 cut(s) 596, 1292
BstAPI GCANNNNNTGC 1 cut(s) 1263
BstAUI TGTACA 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 540
BstDEI CTNAG 3 cut(s) 361, 750, 1340
BstDSI CCRYGG 3 cut(s) 75, 105, 713
BstENI CCTNNNNNAGG 1 cut(s) 621
BstF5I GGATG 3 cut(s) 491, 724, 1268
BstKTI GATC 8 cut(s) 199, 360, 520, 616, 832, 858, 1090, 1285
BstMAI GTCTC 6 cut(s) 337, 424, 632, 868, 889, 930
BstMBI GATC 8 cut(s) 196, 357, 517, 613, 829, 855, 1087, 1282
BstMWI GCNNNNNNNGC 3 cut(s) 505, 877, 1263
BstNI CCWGG 2 cut(s) 249, 624
BstNSI RCATGY 2 cut(s) 1147, 1156
BstSCI CCNGG 2 cut(s) 247, 622
BstSFI CTRYAG 1 cut(s) 1179
BstV1I GCAGC 3 cut(s) 78, 1174, 1361
BstX2I RGATCY 3 cut(s) 357, 613, 1282
BstYI RGATCY 3 cut(s) 357, 613, 1282
Bsu15I ATCGAT 1 cut(s) 858
BsuI GTATCC 1 cut(s) 73
BsuTUI ATCGAT 1 cut(s) 858
BtgI CCRYGG 3 cut(s) 75, 105, 713
BtrI CACGTC 1 cut(s) 342
BtsCI GGATG 3 cut(s) 491, 724, 1268
BtsI GCAGTG 1 cut(s) 1236
BtsIMutI CAGTG 3 cut(s) 171, 712, 1236
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 540
Cfr13I GGNCC 3 cut(s) 408, 702, 710
ClaI ATCGAT 1 cut(s) 858
CsiI ACCWGGT 1 cut(s) 622
Csp6I GTAC 5 cut(s) 18, 262, 280, 432, 1336
CviAII CATG 7 cut(s) 76, 106, 597, 714, 888, 1144, 1153
CviQI GTAC 5 cut(s) 18, 262, 280, 432, 1336
DdeI CTNAG 3 cut(s) 361, 750, 1340
DpnI GATC 8 cut(s) 198, 359, 519, 615, 831, 857, 1089, 1284
DpnII GATC 8 cut(s) 196, 357, 517, 613, 829, 855, 1087, 1282
Eam1104I CTCTTC 2 cut(s) 596, 1292
EarI CTCTTC 2 cut(s) 596, 1292
Eco130I CCWWGG 3 cut(s) 75, 105, 713
Eco31I GGTCTC 3 cut(s) 632, 889, 930
Eco47I GGWCC 3 cut(s) 408, 702, 710
Eco88I CYCGRG 1 cut(s) 865
EcoNI CCTNNNNNAGG 1 cut(s) 621
EcoRI GAATTC 1 cut(s) 487
EcoRII CCWGG 2 cut(s) 247, 622
EcoT14I CCWWGG 3 cut(s) 75, 105, 713
ErhI CCWWGG 3 cut(s) 75, 105, 713
FaeI CATG 7 cut(s) 79, 109, 600, 717, 891, 1147, 1156
FalI AAGNNNNNCTT 2 cut(s) 577, 609
FatI CATG 7 cut(s) 75, 105, 596, 713, 887, 1143, 1152
FauI CCCGC 1 cut(s) 31
FbaI TGATCA 2 cut(s) 196, 517
Fnu4HI GCNGC 4 cut(s) 67, 159, 1188, 1350
FokI GGATG 3 cut(s) 478, 731, 1275
Fsp4HI GCNGC 4 cut(s) 67, 159, 1188, 1350
FspBI CTAG 7 cut(s) 539, 644, 690, 846, 1110, 1139, 1149
GluI GCNGC 4 cut(s) 67, 159, 1188, 1350
GsaI CCCAGC 2 cut(s) 486, 499
Hin1II CATG 7 cut(s) 79, 109, 600, 717, 891, 1147, 1156
HinfI GANTC 6 cut(s) 389, 727, 735, 745, 1175, 1208
HphI GGTGA 4 cut(s) 206, 512, 805, 987
Hpy166II GTNNAC 5 cut(s) 20, 178, 411, 442, 710
Hpy188I TCNGA 7 cut(s) 337, 349, 364, 732, 855, 1343, 1357
Hpy188III TCNNGA 7 cut(s) 690, 749, 846, 1077, 1139, 1172, 1295
Hpy8I GTNNAC 5 cut(s) 20, 178, 411, 442, 710
HpyAV CCTTC 4 cut(s) 539, 909, 1009, 1030
HpyCH4III ACNGT 4 cut(s) 175, 696, 885, 1319
HpyCH4IV ACGT 2 cut(s) 300, 341
HpyCH4V TGCA 9 cut(s) 53, 66, 620, 945, 981, 1054, 1236, 1349, 1382
HpyF10VI GCNNNNNNNGC 3 cut(s) 505, 877, 1263
HpyF3I CTNAG 3 cut(s) 361, 750, 1340
HpySE526I ACGT 2 cut(s) 300, 341
Hsp92II CATG 7 cut(s) 79, 109, 600, 717, 891, 1147, 1156
Ksp22I TGATCA 2 cut(s) 196, 517
Kzo9I GATC 8 cut(s) 196, 357, 517, 613, 829, 855, 1087, 1282
LmnI GCTCC 2 cut(s) 12, 322
Lsp1109I GCAGC 3 cut(s) 78, 1174, 1361
LweI GCATC 2 cut(s) 1174, 1253
MabI ACCWGGT 1 cut(s) 622
MaeI CTAG 7 cut(s) 539, 644, 690, 846, 1110, 1139, 1149
MaeII ACGT 2 cut(s) 300, 341
MaeIII GTNAC 2 cut(s) 251, 787
MalI GATC 8 cut(s) 198, 359, 519, 615, 831, 857, 1089, 1284
MboI GATC 8 cut(s) 196, 357, 517, 613, 829, 855, 1087, 1282
MboII GAAGA 5 cut(s) 232, 613, 763, 1092, 1279
MfeI CAATTG 1 cut(s) 976
MflI RGATCY 3 cut(s) 357, 613, 1282
MlyI GAGTC 3 cut(s) 398, 721, 1184
MmeI TCCRAC 1 cut(s) 360
MnlI CCTC 5 cut(s) 348, 604, 750, 1003, 1349
MseI TTAA 6 cut(s) 476, 762, 876, 1220, 1362, 1371
MspA1I CMGCKG 1 cut(s) 161
MspR9I CCNGG 2 cut(s) 249, 624
MunI CAATTG 1 cut(s) 976
Mva1269I GAATGC 1 cut(s) 1108
MvaI CCWGG 2 cut(s) 249, 624
MwoI GCNNNNNNNGC 3 cut(s) 505, 877, 1263
NcoI CCATGG 3 cut(s) 75, 105, 713
NdeII GATC 8 cut(s) 196, 357, 517, 613, 829, 855, 1087, 1282
NheI GCTAGC 1 cut(s) 538
NlaIII CATG 7 cut(s) 79, 109, 600, 717, 891, 1147, 1156
NlaIV GGNNCC 2 cut(s) 467, 615
NmuCI GTSAC 1 cut(s) 787
NspI RCATGY 2 cut(s) 1147, 1156
PaqCI CACCTGC 1 cut(s) 206
PctI GAATGC 1 cut(s) 1108
PfeI GAWTC 3 cut(s) 735, 745, 1208
PflMI CCANNNNNTGG 2 cut(s) 76, 909
PkrI GCNGC 4 cut(s) 68, 160, 1189, 1351
PleI GAGTC 3 cut(s) 397, 721, 1183
PpsI GAGTC 3 cut(s) 397, 721, 1183
Psp1406I AACGTT 1 cut(s) 300
Psp6I CCWGG 2 cut(s) 247, 622
PspFI CCCAGC 2 cut(s) 482, 495
PspGI CCWGG 2 cut(s) 247, 622
PspN4I GGNNCC 2 cut(s) 467, 615
PspPI GGNCC 3 cut(s) 408, 702, 710
PsuI RGATCY 3 cut(s) 357, 613, 1282
RsaI GTAC 5 cut(s) 19, 263, 281, 433, 1337
RsaNI GTAC 5 cut(s) 18, 262, 280, 432, 1336
SaqAI TTAA 6 cut(s) 476, 762, 876, 1220, 1362, 1371
SatI GCNGC 4 cut(s) 67, 159, 1188, 1350
Sau3AI GATC 8 cut(s) 196, 357, 517, 613, 829, 855, 1087, 1282
Sau96I GGNCC 3 cut(s) 408, 702, 710
ScaI AGTACT 1 cut(s) 263
SchI GAGTC 3 cut(s) 398, 721, 1184
ScrFI CCNGG 2 cut(s) 249, 624
SexAI ACCWGGT 1 cut(s) 622
SfaNI GCATC 2 cut(s) 1174, 1253
SfcI CTRYAG 1 cut(s) 1179
SinI GGWCC 3 cut(s) 408, 702, 710
SpeI ACTAGT 1 cut(s) 1109
SsiI CCGC 3 cut(s) 24, 159, 1121
SspMI CTAG 7 cut(s) 539, 644, 690, 846, 1110, 1139, 1149
StyD4I CCNGG 2 cut(s) 247, 622
StyI CCWWGG 3 cut(s) 75, 105, 713
TaaI ACNGT 4 cut(s) 175, 696, 885, 1319
TaiI ACGT 2 cut(s) 303, 344
TaqI TCGA 2 cut(s) 858, 1034
TaqII GACCGA 1 cut(s) 1146
TatI WGTACW 2 cut(s) 17, 261
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 3 cut(s) 735, 745, 1208
Tru1I TTAA 6 cut(s) 476, 762, 876, 1220, 1362, 1371
Tru9I TTAA 6 cut(s) 476, 762, 876, 1220, 1362, 1371
TscAI CASTG 3 cut(s) 178, 712, 1243
TseFI GTSAC 1 cut(s) 787
TseI GCWGC 3 cut(s) 66, 1187, 1349
Tsp45I GTSAC 1 cut(s) 787
TspDTI ATGAA 4 cut(s) 113, 480, 585, 669
TspRI CASTG 3 cut(s) 178, 712, 1243
Van91I CCANNNNNTGG 2 cut(s) 76, 909
VpaK11BI GGWCC 3 cut(s) 408, 702, 710
XagI CCTNNNNNAGG 1 cut(s) 621
XapI RAATTY 4 cut(s) 39, 487, 1269, 1366
XbaI TCTAGA 3 cut(s) 689, 845, 1138
XceI RCATGY 2 cut(s) 1147, 1156
XcmI CCANNNNNNNNNTGG 2 cut(s) 188, 1274
XspI CTAG 7 cut(s) 539, 644, 690, 846, 1110, 1139, 1149
ZrmI AGTACT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.