Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0000564

Physical Location & Seq

Genomic Coordinates Forward (+)

1445148 .. 1445765

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g01940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGATACCAAACCAAACTCAGAGTTCGTGTTCTCCGTTATTTTATTATGTGTATTTCTCAAGTCCCATGTTTACCTAGCAGCTGACACTATTGGCGAAAACCAATCTCTCTCTGGCGATCAAACCATTGGTTCTGCTGGTGGGATGTTTGAGCTAGGTTTCTTCAAACCTGGTCAGCTTTCAAACTACTATATAGGCATATGGTACTCCAAGCAAGTAGTATCTGAGATGACCGTTGTTTGGGTAGCAAATAGGGAAATACCAGTATCTGATAGATTTTCTTCGGTCTTGAGCATCTTAGACGGTAATTTAGTTATCTTGAACCAGTCCAAAACCCTGGTTTGGTCAACAAATTTAAACTCTACCACCAATTGTGGTTCTGTACAAGCAGTTCTTTTGGATAGTGGAAACTTTGTCTTGAGAGCGGGGTCTAGTAACAATACATCAGAGCCTTTATGGCAAAGCTTTGATCATCCAACCCATACTTGGCTACCAGGAGCTAAACTTGGATTCAACAAAATTACAAATCATACCCAAACTCTCACTTCATGGAAGAATTCGGAAACTCCTGCACCAGGTCTTTACTCTCTTGAGCTAGCCCAGGACGAAAGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

206

Amino Acids

22.46

Weight (kDa)

5.07

Isoelectric Point (pI)

26.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	78 - 185	1.2e-34	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000564)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica	MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica	Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis	pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis	RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata	RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora	Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii	Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa	Rorug01G0022300 Rorug04G0061600
rosa_samantha	Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana	Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	425
AciI	CCGC	1 cut(s)	425
AcsI	RAATTY	2 cut(s)	352, 556
AfaI	GTAC	2 cut(s)	206, 384
AfiI	CCNNNNNNNGG	4 cut(s)	240, 342, 486, 575
AgsI	TTSAA	4 cut(s)	166, 183, 322, 514
AjnI	CCWGG	5 cut(s)	169, 336, 493, 574, 600
AluBI	AGCT	6 cut(s)	83, 154, 178, 465, 500, 595
AluI	AGCT	6 cut(s)	83, 154, 178, 465, 500, 595
AlwNI	CAGNNNCTG	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	2 cut(s)	352, 556
AsuNHI	GCTAGC	1 cut(s)	595
BbvI	GCAGC	1 cut(s)	92
BciT130I	CCWGG	5 cut(s)	171, 338, 495, 576, 602
BclI	TGATCA	1 cut(s)	469
BfaI	CTAG	4 cut(s)	77, 155, 432, 596
BglI	GCCNNNNNGGC	1 cut(s)	457
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	5 cut(s)	171, 338, 495, 576, 602
BmrFI	CCNGG	5 cut(s)	171, 338, 495, 576, 602
BmsI	GCATC	1 cut(s)	303
BmtI	GCTAGC	1 cut(s)	599
BpuEI	CTTGAG	4 cut(s)	44, 310, 439, 611
BsaJI	CCNNGG	2 cut(s)	336, 600
Bsc4I	CCNNNNNNNGG	4 cut(s)	240, 342, 486, 575
Bse1I	ACTGG	2 cut(s)	263, 325
BseBI	CCWGG	5 cut(s)	171, 338, 495, 576, 602
BseDI	CCNNGG	2 cut(s)	336, 600
BseGI	GGATG	2 cut(s)	150, 472
BseLI	CCNNNNNNNGG	4 cut(s)	240, 342, 486, 575
BseMII	CTCAG	2 cut(s)	33, 216
BseNI	ACTGG	2 cut(s)	263, 325
BseXI	GCAGC	1 cut(s)	92
BsgI	GTGCAG	1 cut(s)	555
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	4 cut(s)	240, 342, 486, 575
BsmFI	GGGAC	1 cut(s)	49
Bsp1407I	TGTACA	1 cut(s)	382
Bsp143I	GATC	2 cut(s)	118, 469
BspACI	CCGC	1 cut(s)	425
BspCNI	CTCAG	2 cut(s)	32, 217
BspOI	GCTAGC	1 cut(s)	599
BsrBI	CCGCTC	1 cut(s)	425
BsrGI	TGTACA	1 cut(s)	382
BsrI	ACTGG	2 cut(s)	263, 325
BssECI	CCNNGG	2 cut(s)	336, 600
BssMI	GATC	2 cut(s)	118, 469
Bst2UI	CCWGG	5 cut(s)	171, 338, 495, 576, 602
Bst4CI	ACNGT	2 cut(s)	235, 305
BstAUI	TGTACA	1 cut(s)	382
BstC8I	GCNNGC	1 cut(s)	597
BstDEI	CTNAG	3 cut(s)	19, 225, 298
BstENI	CCTNNNNNAGG	1 cut(s)	573
BstF5I	GGATG	2 cut(s)	150, 472
BstKTI	GATC	2 cut(s)	121, 472
BstMBI	GATC	2 cut(s)	118, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	457
BstNI	CCWGG	5 cut(s)	171, 338, 495, 576, 602
BstSCI	CCNGG	5 cut(s)	169, 336, 493, 574, 600
BstV1I	GCAGC	1 cut(s)	92
BstXI	CCANNNNNNTGG	1 cut(s)	337
BtsCI	GGATG	2 cut(s)	150, 472
Cac8I	GCNNGC	1 cut(s)	597
CaiI	CAGNNNCTG	1 cut(s)	269
CsiI	ACCWGGT	2 cut(s)	169, 574
Csp6I	GTAC	2 cut(s)	205, 383
CviAII	CATG	2 cut(s)	68, 549
CviJI	RGCY	9 cut(s)	83, 154, 178, 451, 465, 490, 500, 595, 599
CviKI_1	RGCY	9 cut(s)	83, 154, 178, 451, 465, 490, 500, 595, 599
CviQI	GTAC	2 cut(s)	205, 383
DdeI	CTNAG	3 cut(s)	19, 225, 298
DpnI	GATC	2 cut(s)	120, 471
DpnII	GATC	2 cut(s)	118, 469
DraI	TTTAAA	1 cut(s)	357
EcoNI	CCTNNNNNAGG	1 cut(s)	573
EcoRI	GAATTC	1 cut(s)	556
EcoRII	CCWGG	5 cut(s)	169, 336, 493, 574, 600
FaeI	CATG	2 cut(s)	71, 552
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	2 cut(s)	67, 548
FauI	CCCGC	1 cut(s)	418
FauNDI	CATATG	1 cut(s)	200
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	2 cut(s)	157, 459
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	4 cut(s)	77, 155, 432, 596
GluI	GCNGC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	71, 552
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	1 cut(s)	510
Hpy166II	GTNNAC	2 cut(s)	73, 348
Hpy188I	TCNGA	5 cut(s)	22, 226, 271, 448, 562
Hpy188III	TCNNGA	4 cut(s)	289, 319, 418, 590
Hpy8I	GTNNAC	2 cut(s)	73, 348
HpyCH4III	ACNGT	2 cut(s)	235, 305
HpyCH4V	TGCA	1 cut(s)	572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	457
HpyF3I	CTNAG	3 cut(s)	19, 225, 298
Hsp92II	CATG	2 cut(s)	71, 552
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	118, 469
LmnI	GCTCC	1 cut(s)	497
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	1 cut(s)	303
MabI	ACCWGGT	2 cut(s)	169, 574
MaeI	CTAG	4 cut(s)	77, 155, 432, 596
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	2 cut(s)	120, 471
MbiI	CCGCTC	1 cut(s)	425
MboI	GATC	2 cut(s)	118, 469
MboII	GAAGA	3 cut(s)	154, 273, 565
MfeI	CAATTG	1 cut(s)	370
MluCI	AATT	5 cut(s)	307, 352, 370, 519, 556
MmeI	TCCRAC	1 cut(s)	500
MseI	TTAA	1 cut(s)	356
MspA1I	CMGCKG	1 cut(s)	83
MspR9I	CCNGG	5 cut(s)	171, 338, 495, 576, 602
MunI	CAATTG	1 cut(s)	370
MvaI	CCWGG	5 cut(s)	171, 338, 495, 576, 602
MwoI	GCNNNNNNNGC	1 cut(s)	457
NdeI	CATATG	1 cut(s)	200
NdeII	GATC	2 cut(s)	118, 469
NheI	GCTAGC	1 cut(s)	595
NlaIII	CATG	2 cut(s)	71, 552
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	510
PkrI	GCNGC	1 cut(s)	82
Psp6I	CCWGG	5 cut(s)	169, 336, 493, 574, 600
PspGI	CCWGG	5 cut(s)	169, 336, 493, 574, 600
PsrI	GAACNNNNNNTAC	2 cut(s)	375, 407
PstNI	CAGNNNCTG	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	2 cut(s)	206, 384
RsaNI	GTAC	2 cut(s)	205, 383
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	2 cut(s)	118, 469
ScrFI	CCNGG	5 cut(s)	171, 338, 495, 576, 602
SexAI	ACCWGGT	2 cut(s)	169, 574
SfaNI	GCATC	1 cut(s)	303
SmlI	CTYRAG	4 cut(s)	59, 289, 418, 590
SmoI	CTYRAG	4 cut(s)	59, 289, 418, 590
Sse9I	AATT	5 cut(s)	307, 352, 370, 519, 556
SsiI	CCGC	1 cut(s)	425
SspMI	CTAG	4 cut(s)	77, 155, 432, 596
StyD4I	CCNGG	5 cut(s)	169, 336, 493, 574, 600
TaaI	ACNGT	2 cut(s)	235, 305
TaqII	GACCGA	1 cut(s)	274
TasI	AATT	5 cut(s)	307, 352, 370, 519, 556
TatI	WGTACW	1 cut(s)	382
TfiI	GAWTC	1 cut(s)	510
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	537
TspGWI	ACGGA	1 cut(s)	25
XagI	CCTNNNNNAGG	1 cut(s)	573
XapI	RAATTY	2 cut(s)	352, 556
XcmI	CCANNNNNNNNNTGG	2 cut(s)	110, 483
XspI	CTAG	4 cut(s)	77, 155, 432, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.