RchiOBHm_Chr1g0318601

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000564
Physical Location & Seq
Forward (+)
6177979 .. 6181158
3180 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54886

Sequence Viewer

Length: 2448 bp
ATGCTTTCCCTTTTCTTCTTGTGCCTATGTCTCAAGTCCCATATCTGCTTTGGAGCTGACACCATCACAGCAAACCAGTCTCTCTCTGGTGACCAAACCATTGTTTCAGCTGGTGGGAAATTTGAACTGGGTTTCTTCGAGGCAGGTAATACTGCAAACTACTACATAGGCATGTGGTACTACAAGAAACTAGTACCAGACCAAACCATAGTCTGGGTGGCCAATAGGGTGCAGCCAGTCTCTGATAGATTTTCTTCAGAGTTGAGAATCTCAGATGGTAATTTGGTATTGTTTAATGAGTCCAAAACCCCTATTTGGGCCACAAATGTCAGTTCAAGTTCAGCCTCTTTTATACACGTAGTTCTTTTAGATAATGGAAACCTTGCGCTAAGAGCTGGGTCTTTGCCTTTATGGCAAAGTTTTGATCAACCAGCCCACACTTTTCTACCAGAAAGCAAACTTGGGTTCAACAATGTTACAAAGCGAACTCAACTCCTGACTTCATGGAAGAATTCTGAGGATCCTGCACCGGGTCCATTCTCTCTTGAGCTAGACGCAACAAGCAACTCATTTATTATAAAGTGGAATAGGTCTCAACAGTATTGGACAACTGGATTTTGGGATCAAAGCAGACATAGGTTCAGTTTGCTTTCCGAGATGTTGATGCCTAACCATATCTTCAATTTCAGATATGTTACAAACGAAAATGAGAGCTACTTCACCTATTCTCTTTATGGTGCTAACATCACATCTCGATTAATAATGGATGTATCGGGTCAAGTTAAGCAACTGTCCTGGTTGCACACAGGGGGATGGAAATTGTTATGGATTCAACCAAAGAATCACTGTGATGTTTATGGTCTATGTGGGGCATTTAGTCGTTGTAGTGAGAAACCCTTGCCCCTCTGTAATTGTTTGAATGGTTATGAACCGAAATCCAAGGTGGATTGGGATTTGCAGGATTACTCCCTAGGGTGTTCAAGAAAAACCAGGCTGCAGTGTGGAAATGTTACTGGTGTTGATGGGATGAGTGACCGGTTTATAGAAATGTCTAGCAGGCTATCATCCGAAGATATACAGATTCAGAATTTGACTTATGTTCATAGTATTGAAGACTGTGAATCAATTTGCTTAAATGATTGCAATTGCACTGCTTATGGTTATAGCAGCTCTTCTTCTGAATGTTCAACTTGGAAAGGAGATATGTGGGCGGATGAAAATGGAAGAACTTTATACATCAGAACAGCAGCTTCTGATTATAAGAATCCCACAAGTAATGTGATGTTAATTGGTAGAAAGCGAACCATTGTAATTGCAACAGTCTCAGCAACTGCAGGGTTGCTTACAATAGTCTTTGGCCATTTTTTATGGAAGAATACTTTGGGAAAGAGAAGTGAAACTATAAAGAATCTTAGCGCTGCTGGTGTGGAGAATGATACAGAACTACCACTATACAGTTTAAGGAGTATATTAGTGGCTACTAATAACTTCTCTGAAGCGAATAAACTAGGAGAGGGAGGATTCGGCCCTGTTTATAAGGGGATTTTGCCTGAAAATCAAGAAGTAGCCATAAAAAGGCTATCAAAGAAGTCCGGGCAAGGACAACAGGAGTTCATGAATGAGTTAAAGCTTATTGCGAAGCTCCAACATACCAACCTTGTCAGACTCTTGGGTTGCTGCATTGAAGCAGAGGAAATGATATTGGTGTATGAGTACATGCCAAATCGAAGTTTGGACAAATTTTTGTTTGATCCATCCGAAAAGACAAAACTGGATTGGGGTAGACGTTTTAGAATTATAGAAGGTATAGCTCAAGGATTGCTTTATATCCACAAGTACTCAAGATTAAGAATCATTCACAGGGATCTAAAAGCAAGTAATATTCTATTGGATGGAACAATGAACCCTAAGATTTCTGACTTTGGAATGGCAAAGATTTTTGACATAAATCAAACTGAAGCAAATACTAACAGGGTTGTTGGGACCTACGGTTACATGTCACCTGAGTATGCACGTTATGGTCATTTCTCTGAGAAATCGGATGTATTTAGCTTTGGAGTTTTGTTGCTGGAGATTGTAAGTGGAAAGAAGAATGCTGTTTTCTATCGTTCTGAACGTTCACTAACTCTCGCTGGATGGGCATGGGACCTATGGAACGAAGGAAGGGGAATAGAGGTGATTGATGCATCAATAAGGGAAATATTTCAGGCTCATGAAGCTTTAAGGTGTATCCATGTAGGACTTCTGTGCGTTCAAGAATCTGCAGCTGATCGACCTACAATGGCGTCAGTAATTCACATGTTGCAGGGAAATGAAGCTACATCTCTTCCACCCACCAAAGAACCTGCTTTTTCAACACAGAAGAATTTCAGTGCTATTGGTTCTTCTCAAAGATCTACCAATTATTCAAACAATGCACTCACGATTAGTTTGCCAGAAGCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

815

Amino Acids

91.62

Weight (kDa)

7.2

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 69 - 170 5.7e-29 D-mannose binding lectin
S_locus_glycop PF00954 202 - 313 6.5e-25 S-locus glycoprotein domain
PAN_2 PF08276 344 - 402 6.3e-09 PAN-like domain
Pkinase PF00069 498 - 697 1.2e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 500 - 767 3e-50 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa Rorug01G0022300 Rorug04G0061600
rosa_samantha Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 578, 1260, 1536
Acc36I ACCTGC 2 cut(s) 134, 2353
AccB7I CCANNNNNTGG 1 cut(s) 213
AccI GTMKAC 1 cut(s) 1783
AciI CCGC 1 cut(s) 1211
AclI AACGTT 1 cut(s) 2116
AclWI GGATC 5 cut(s) 515, 528, 630, 1745, 1872
AcoI YGGCCR 2 cut(s) 219, 1357
AcsI RAATTY 5 cut(s) 119, 511, 1087, 1739, 2365
AcuI CTGAAG 3 cut(s) 240, 1515, 1977
AcyI GRCGYC 1 cut(s) 2285
AfaI GTAC 4 cut(s) 179, 195, 1715, 1838
AfeI AGCGCT 1 cut(s) 1417
AfiI CCNNNNNNNGG 5 cut(s) 213, 315, 316, 530, 1575
AflIII ACRYGT 3 cut(s) 355, 1995, 2298
AgeI ACCGGT 1 cut(s) 1035
AhlI ACTAGT 1 cut(s) 190
AjnI CCWGG 2 cut(s) 794, 989
AjuI GAANNNNNNNTTGG 4 cut(s) 444, 476, 1364, 1396
Alw26I GTCTC 5 cut(s) 35, 84, 244, 597, 1327
AlwI GGATC 5 cut(s) 515, 528, 630, 1745, 1872
AlwNI CAGNNNCTG 3 cut(s) 242, 1253, 1331
Aor51HI AGCGCT 1 cut(s) 1417
AoxI GGCC 4 cut(s) 219, 318, 1357, 1525
ApeKI GCWGC 7 cut(s) 232, 994, 1167, 1247, 1418, 1677, 2264
ApoI RAATTY 5 cut(s) 119, 511, 1087, 1739, 2365
AseI ATTAAT 1 cut(s) 758
AsiGI ACCGGT 1 cut(s) 1035
Asp700I GAANNNNTTC 2 cut(s) 2202, 2366
AspA2I CCTAGG 1 cut(s) 970
AspLEI GCGC 2 cut(s) 388, 1418
AspS9I GGNCC 5 cut(s) 318, 533, 1526, 1983, 2146
AsuC2I CCSGG 2 cut(s) 531, 1594
AsuHPI GGTGA 4 cut(s) 101, 712, 1992, 2188
AvaII GGWCC 3 cut(s) 533, 1983, 2146
AvrII CCTAGG 1 cut(s) 970
BalI TGGCCA 2 cut(s) 221, 1359
BamHI GGATCC 1 cut(s) 520
BbsI GAAGAC 1 cut(s) 1119
BbvI GCAGC 7 cut(s) 244, 981, 1179, 1259, 1405, 1664, 2276
BccI CCATC 7 cut(s) 71, 269, 807, 1016, 1762, 1886, 2130
BcgI CGANNNNNNTGC 2 cut(s) 2413, 2447
BciT130I CCWGG 2 cut(s) 796, 991
BciVI GTATCC 1 cut(s) 2240
BclI TGATCA 1 cut(s) 424
BcnI CCSGG 2 cut(s) 531, 1594
BcoDI GTCTC 5 cut(s) 35, 84, 244, 597, 1327
BcuI ACTAGT 1 cut(s) 190
BfaI CTAG 5 cut(s) 191, 551, 971, 1053, 1508
BfmI CTRYAG 3 cut(s) 995, 1332, 2262
BfoI RGCGCY 1 cut(s) 1419
BfuAI ACCTGC 2 cut(s) 134, 2353
BfuI GTATCC 1 cut(s) 2240
BglI GCCNNNNNGGC 1 cut(s) 412
BglII AGATCT 1 cut(s) 2393
BisI GCNGC 7 cut(s) 233, 995, 1168, 1248, 1419, 1678, 2265
BlnI CCTAGG 1 cut(s) 970
BlsI GCNGC 7 cut(s) 234, 996, 1169, 1249, 1420, 1679, 2266
BmcAI AGTACT 1 cut(s) 1838
Bme1390I CCNGG 4 cut(s) 531, 796, 991, 1594
Bme18I GGWCC 3 cut(s) 533, 1983, 2146
BmgT120I GGNCC 5 cut(s) 318, 533, 1526, 1983, 2146
BmiI GGNNCC 4 cut(s) 522, 534, 1984, 2147
BmrFI CCNGG 4 cut(s) 531, 796, 991, 1594
BmrI ACTGGG 1 cut(s) 137
BmsI GCATC 3 cut(s) 654, 2173, 2195
BmuI ACTGGG 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 1119
BpmI CTGGAG 1 cut(s) 2090
BpuEI CTTGAG 4 cut(s) 17, 566, 1797, 1825
BpuMI CCSGG 2 cut(s) 531, 1594
BsaAI YACGTR 1 cut(s) 358
BsaHI GRCGYC 1 cut(s) 2285
BsaI GGTCTC 1 cut(s) 597
BsaJI CCNNGG 2 cut(s) 939, 970
BsaWI WCCGGW 1 cut(s) 1035
Bsc4I CCNNNNNNNGG 5 cut(s) 213, 315, 316, 530, 1575
Bse118I RCCGGY 1 cut(s) 1035
Bse1I ACTGG 6 cut(s) 76, 132, 236, 616, 1018, 1776
BseBI CCWGG 2 cut(s) 796, 991
BseDI CCNNGG 2 cut(s) 939, 970
BseGI GGATG 9 cut(s) 772, 818, 1032, 1064, 1219, 1754, 1897, 2047, 2141
BseLI CCNNNNNNNGG 5 cut(s) 213, 315, 316, 530, 1575
BseMII CTCAG 5 cut(s) 285, 507, 1338, 1995, 2022
BseNI ACTGG 6 cut(s) 76, 132, 236, 616, 1018, 1776
BseXI GCAGC 7 cut(s) 244, 981, 1179, 1259, 1405, 1664, 2276
BseYI CCCAGC 1 cut(s) 395
BsgI GTGCAG 2 cut(s) 251, 510
BshFI GGCC 4 cut(s) 221, 320, 1359, 1527
BshTI ACCGGT 1 cut(s) 1035
BsiSI CCGG 3 cut(s) 530, 1036, 1593
BslFI GGGAC 3 cut(s) 22, 1996, 2159
BslI CCNNNNNNNGG 5 cut(s) 213, 315, 316, 530, 1575
BsmAI GTCTC 5 cut(s) 35, 84, 244, 597, 1327
BsmFI GGGAC 3 cut(s) 22, 1996, 2159
BsmI GAATGC 1 cut(s) 2098
BsnI GGCC 4 cut(s) 221, 320, 1359, 1527
Bso31I GGTCTC 1 cut(s) 597
Bsp143I GATC 7 cut(s) 424, 520, 622, 1750, 1864, 2269, 2393
BspACI CCGC 1 cut(s) 1211
BspANI GGCC 4 cut(s) 221, 320, 1359, 1527
BspCNI CTCAG 5 cut(s) 284, 508, 1337, 1996, 2023
BspHI TCATGA 2 cut(s) 1614, 2212
BspLI GGNNCC 4 cut(s) 522, 534, 1984, 2147
BspMAI CTGCAG 3 cut(s) 999, 1336, 2266
BspMI ACCTGC 2 cut(s) 134, 2353
BspPI GGATC 5 cut(s) 515, 528, 630, 1745, 1872
BspQI GCTCTTC 1 cut(s) 1177
BspTNI GGTCTC 1 cut(s) 597
BsrFI RCCGGY 1 cut(s) 1035
BsrI ACTGG 6 cut(s) 76, 132, 236, 616, 1018, 1776
BssAI RCCGGY 1 cut(s) 1035
BssECI CCNNGG 2 cut(s) 939, 970
BssMI GATC 7 cut(s) 424, 520, 622, 1750, 1864, 2269, 2393
BssNI GRCGYC 1 cut(s) 2285
BssT1I CCWWGG 2 cut(s) 939, 970
Bst2UI CCWGG 2 cut(s) 796, 991
Bst4CI ACNGT 7 cut(s) 600, 792, 848, 1118, 1321, 1457, 1991
Bst6I CTCTTC 2 cut(s) 1177, 2331
BstACI GRCGYC 1 cut(s) 2285
BstBAI YACGTR 1 cut(s) 358
BstC8I GCNNGC 1 cut(s) 1058
BstDEI CTNAG 8 cut(s) 271, 389, 516, 1324, 1412, 1908, 2004, 2031
BstEII GGTNACC 1 cut(s) 89
BstF5I GGATG 9 cut(s) 772, 818, 1032, 1064, 1219, 1754, 1897, 2047, 2141
BstH2I RGCGCY 1 cut(s) 1419
BstHHI GCGC 2 cut(s) 388, 1418
BstKTI GATC 7 cut(s) 427, 523, 625, 1753, 1867, 2272, 2396
BstMAI GTCTC 5 cut(s) 35, 84, 244, 597, 1327
BstMBI GATC 7 cut(s) 424, 520, 622, 1750, 1864, 2269, 2393
BstMWI GCNNNNNNNGC 4 cut(s) 392, 412, 2138, 2216
BstNI CCWGG 2 cut(s) 796, 991
BstNSI RCATGY 4 cut(s) 175, 1720, 1999, 2302
BstPI GGTNACC 1 cut(s) 89
BstSCI CCNGG 4 cut(s) 529, 794, 989, 1592
BstSFI CTRYAG 3 cut(s) 995, 1332, 2262
BstV1I GCAGC 7 cut(s) 244, 981, 1179, 1259, 1405, 1664, 2276
BstV2I GAAGAC 1 cut(s) 1119
BstX2I RGATCY 3 cut(s) 520, 1864, 2393
BstYI RGATCY 3 cut(s) 520, 1864, 2393
BsuI GTATCC 1 cut(s) 2240
BsuRI GGCC 4 cut(s) 221, 320, 1359, 1527
BtsCI GGATG 9 cut(s) 772, 818, 1032, 1064, 1219, 1754, 1897, 2047, 2141
BtsI GCAGTG 2 cut(s) 1004, 1149
BtsIMutI CAGTG 4 cut(s) 844, 1004, 1149, 2377
BveI ACCTGC 2 cut(s) 134, 2353
Cac8I GCNNGC 1 cut(s) 1058
CaiI CAGNNNCTG 3 cut(s) 242, 1253, 1331
CciI TCATGA 2 cut(s) 1614, 2212
CfoI GCGC 2 cut(s) 388, 1418
Cfr10I RCCGGY 1 cut(s) 1035
Cfr13I GGNCC 5 cut(s) 318, 533, 1526, 1983, 2146
CseI GACGC 2 cut(s) 563, 2274
Csp6I GTAC 4 cut(s) 178, 194, 1714, 1837
CspAI ACCGGT 1 cut(s) 1035
CviAII CATG 9 cut(s) 172, 504, 1615, 1717, 1996, 2142, 2213, 2234, 2299
CviQI GTAC 4 cut(s) 178, 194, 1714, 1837
DdeI CTNAG 8 cut(s) 271, 389, 516, 1324, 1412, 1908, 2004, 2031
DpnI GATC 7 cut(s) 426, 522, 624, 1752, 1866, 2271, 2395
DpnII GATC 7 cut(s) 424, 520, 622, 1750, 1864, 2269, 2393
EaeI YGGCCR 2 cut(s) 219, 1357
Eam1104I CTCTTC 2 cut(s) 1177, 2331
EarI CTCTTC 2 cut(s) 1177, 2331
EciI GGCGGA 1 cut(s) 1226
Eco130I CCWWGG 2 cut(s) 939, 970
Eco31I GGTCTC 1 cut(s) 597
Eco47I GGWCC 3 cut(s) 533, 1983, 2146
Eco47III AGCGCT 1 cut(s) 1417
Eco57I CTGAAG 3 cut(s) 240, 1515, 1977
Eco91I GGTNACC 1 cut(s) 89
EcoO109I RGGNCCY 2 cut(s) 1983, 2146
EcoO65I GGTNACC 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 511
EcoRII CCWGG 2 cut(s) 794, 989
EcoT14I CCWWGG 2 cut(s) 939, 970
EcoT22I ATGCAT 1 cut(s) 2188
ErhI CCWWGG 2 cut(s) 939, 970
FaeI CATG 9 cut(s) 175, 507, 1618, 1720, 1999, 2145, 2216, 2237, 2302
FalI AAGNNNNNCTT 2 cut(s) 1806, 1838
FaqI GGGAC 3 cut(s) 22, 1996, 2159
FatI CATG 9 cut(s) 171, 503, 1614, 1716, 1995, 2141, 2212, 2233, 2298
FbaI TGATCA 1 cut(s) 424
FblI GTMKAC 1 cut(s) 1783
Fnu4HI GCNGC 7 cut(s) 233, 995, 1168, 1248, 1419, 1678, 2265
FokI GGATG 9 cut(s) 779, 825, 1039, 1051, 1226, 1741, 1904, 2054, 2148
Fsp4HI GCNGC 7 cut(s) 233, 995, 1168, 1248, 1419, 1678, 2265
FspBI CTAG 5 cut(s) 191, 551, 971, 1053, 1508
GlaI GCGC 2 cut(s) 387, 1417
GluI GCNGC 7 cut(s) 233, 995, 1168, 1248, 1419, 1678, 2265
GsaI CCCAGC 1 cut(s) 399
GsuI CTGGAG 1 cut(s) 2090
HaeII RGCGCY 1 cut(s) 1419
HaeIII GGCC 4 cut(s) 221, 320, 1359, 1527
HapII CCGG 3 cut(s) 530, 1036, 1593
HgaI GACGC 2 cut(s) 563, 2274
HhaI GCGC 2 cut(s) 388, 1418
Hin1I GRCGYC 1 cut(s) 2285
Hin1II CATG 9 cut(s) 175, 507, 1618, 1720, 1999, 2145, 2216, 2237, 2302
Hin6I GCGC 2 cut(s) 386, 1416
HinP1I GCGC 2 cut(s) 386, 1416
HindIII AAGCTT 2 cut(s) 1628, 2217
HpaII CCGG 3 cut(s) 530, 1036, 1593
HphI GGTGA 4 cut(s) 101, 712, 1992, 2188
Hpy166II GTNNAC 2 cut(s) 1784, 2120
Hpy8I GTNNAC 2 cut(s) 1784, 2120
HpyAV CCTTC 3 cut(s) 1796, 2153, 2157
HpyCH4III ACNGT 7 cut(s) 600, 792, 848, 1118, 1321, 1457, 1991
HpyCH4IV ACGT 4 cut(s) 357, 1786, 2014, 2116
HpyF10VI GCNNNNNNNGC 4 cut(s) 392, 412, 2138, 2216
HpyF3I CTNAG 8 cut(s) 271, 389, 516, 1324, 1412, 1908, 2004, 2031
HpySE526I ACGT 4 cut(s) 357, 1786, 2014, 2116
Hsp92I GRCGYC 1 cut(s) 2285
Hsp92II CATG 9 cut(s) 175, 507, 1618, 1720, 1999, 2145, 2216, 2237, 2302
HspAI GCGC 2 cut(s) 386, 1416
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 7 cut(s) 424, 520, 622, 1750, 1864, 2269, 2393
LguI GCTCTTC 1 cut(s) 1177
LmnI GCTCC 2 cut(s) 53, 1647
Lsp1109I GCAGC 7 cut(s) 244, 981, 1179, 1259, 1405, 1664, 2276
LweI GCATC 3 cut(s) 654, 2173, 2195
MaeI CTAG 5 cut(s) 191, 551, 971, 1053, 1508
MaeII ACGT 4 cut(s) 357, 1786, 2014, 2116
MaeIII GTNAC 7 cut(s) 89, 475, 694, 1009, 1031, 1991, 1998
MalI GATC 7 cut(s) 426, 522, 624, 1752, 1866, 2271, 2395
MboI GATC 7 cut(s) 424, 520, 622, 1750, 1864, 2269, 2393
MfeI CAATTG 1 cut(s) 1144
MflI RGATCY 3 cut(s) 520, 1864, 2393
MlsI TGGCCA 2 cut(s) 221, 1359
MluNI TGGCCA 2 cut(s) 221, 1359
MlyI GAGTC 2 cut(s) 308, 1659
MmeI TCCRAC 1 cut(s) 1669
MnlI CCTC 8 cut(s) 133, 355, 511, 914, 1507, 1511, 1684, 2167
Mox20I TGGCCA 2 cut(s) 221, 1359
Mph1103I ATGCAT 1 cut(s) 2188
MroXI GAANNNNTTC 2 cut(s) 2202, 2366
MscI TGGCCA 2 cut(s) 221, 1359
MseI TTAA 9 cut(s) 294, 758, 783, 1133, 1286, 1460, 1625, 1847, 2222
MslI CAYNNNNRTG 2 cut(s) 170, 849
Msp20I TGGCCA 2 cut(s) 221, 1359
MspA1I CMGCKG 2 cut(s) 110, 2267
MspI CCGG 3 cut(s) 530, 1036, 1593
MspR9I CCNGG 4 cut(s) 531, 796, 991, 1594
MunI CAATTG 1 cut(s) 1144
Mva1269I GAATGC 1 cut(s) 2098
MvaI CCWGG 2 cut(s) 796, 991
MwoI GCNNNNNNNGC 4 cut(s) 392, 412, 2138, 2216
NciI CCSGG 2 cut(s) 531, 1594
NdeII GATC 7 cut(s) 424, 520, 622, 1750, 1864, 2269, 2393
NlaIII CATG 9 cut(s) 175, 507, 1618, 1720, 1999, 2145, 2216, 2237, 2302
NlaIV GGNNCC 4 cut(s) 522, 534, 1984, 2147
NmuCI GTSAC 3 cut(s) 89, 1031, 1998
NsiI ATGCAT 1 cut(s) 2188
NspI RCATGY 4 cut(s) 175, 1720, 1999, 2302
PagI TCATGA 2 cut(s) 1614, 2212
PciI ACATGT 2 cut(s) 1995, 2298
PciSI GCTCTTC 1 cut(s) 1177
PcsI WCGNNNNNNNCGW 1 cut(s) 2113
PctI GAATGC 1 cut(s) 2098
PdmI GAANNNNTTC 2 cut(s) 2202, 2366
PflMI CCANNNNNTGG 1 cut(s) 213
PinAI ACCGGT 1 cut(s) 1035
PkrI GCNGC 7 cut(s) 234, 996, 1169, 1249, 1420, 1679, 2266
PleI GAGTC 2 cut(s) 307, 1659
PpsI GAGTC 2 cut(s) 307, 1659
Ppu21I YACGTR 1 cut(s) 358
PpuMI RGGWCCY 2 cut(s) 1983, 2146
PscI ACATGT 2 cut(s) 1995, 2298
PshBI ATTAAT 1 cut(s) 758
PsiI TTATAA 3 cut(s) 578, 1260, 1536
Psp1406I AACGTT 1 cut(s) 2116
Psp5II RGGWCCY 2 cut(s) 1983, 2146
Psp6I CCWGG 2 cut(s) 794, 989
PspEI GGTNACC 1 cut(s) 89
PspFI CCCAGC 1 cut(s) 395
PspGI CCWGG 2 cut(s) 794, 989
PspN4I GGNNCC 4 cut(s) 522, 534, 1984, 2147
PspPI GGNCC 5 cut(s) 318, 533, 1526, 1983, 2146
PspPPI RGGWCCY 2 cut(s) 1983, 2146
PstI CTGCAG 3 cut(s) 999, 1336, 2266
PstNI CAGNNNCTG 3 cut(s) 242, 1253, 1331
PsuI RGATCY 3 cut(s) 520, 1864, 2393
PvuII CAGCTG 2 cut(s) 110, 2267
RsaI GTAC 4 cut(s) 179, 195, 1715, 1838
RsaNI GTAC 4 cut(s) 178, 194, 1714, 1837
RseI CAYNNNNRTG 2 cut(s) 170, 849
SapI GCTCTTC 1 cut(s) 1177
SaqAI TTAA 9 cut(s) 294, 758, 783, 1133, 1286, 1460, 1625, 1847, 2222
SatI GCNGC 7 cut(s) 233, 995, 1168, 1248, 1419, 1678, 2265
Sau3AI GATC 7 cut(s) 424, 520, 622, 1750, 1864, 2269, 2393
Sau96I GGNCC 5 cut(s) 318, 533, 1526, 1983, 2146
ScaI AGTACT 1 cut(s) 1838
SchI GAGTC 2 cut(s) 308, 1659
ScrFI CCNGG 4 cut(s) 531, 796, 991, 1594
SfaNI GCATC 3 cut(s) 654, 2173, 2195
SfcI CTRYAG 3 cut(s) 995, 1332, 2262
SinI GGWCC 3 cut(s) 533, 1983, 2146
SmiMI CAYNNNNRTG 2 cut(s) 170, 849
SmlI CTYRAG 4 cut(s) 32, 545, 1812, 1840
SmoI CTYRAG 4 cut(s) 32, 545, 1812, 1840
SpeI ACTAGT 1 cut(s) 190
SsiI CCGC 1 cut(s) 1211
SspI AATATT 2 cut(s) 1882, 2202
SspMI CTAG 5 cut(s) 191, 551, 971, 1053, 1508
StyD4I CCNGG 4 cut(s) 529, 794, 989, 1592
StyI CCWWGG 2 cut(s) 939, 970
TaaI ACNGT 7 cut(s) 600, 792, 848, 1118, 1321, 1457, 1991
TaiI ACGT 4 cut(s) 360, 1789, 2017, 2119
TaqI TCGA 5 cut(s) 138, 754, 1726, 2272, 2443
TatI WGTACW 2 cut(s) 1713, 1836
Tru1I TTAA 9 cut(s) 294, 758, 783, 1133, 1286, 1460, 1625, 1847, 2222
Tru9I TTAA 9 cut(s) 294, 758, 783, 1133, 1286, 1460, 1625, 1847, 2222
TscAI CASTG 4 cut(s) 851, 1004, 1156, 2377
TseFI GTSAC 3 cut(s) 89, 1031, 1998
TseI GCWGC 7 cut(s) 232, 994, 1167, 1247, 1418, 1677, 2264
Tsp45I GTSAC 3 cut(s) 89, 1031, 1998
TspDTI ATGAA 9 cut(s) 492, 942, 1091, 1230, 1603, 1631, 1916, 2229, 2328
TspRI CASTG 4 cut(s) 851, 1004, 1156, 2377
Van91I CCANNNNNTGG 1 cut(s) 213
VpaK11BI GGWCC 3 cut(s) 533, 1983, 2146
VspI ATTAAT 1 cut(s) 758
XapI RAATTY 5 cut(s) 119, 511, 1087, 1739, 2365
XceI RCATGY 4 cut(s) 175, 1720, 1999, 2302
XcmI CCANNNNNNNNNTGG 3 cut(s) 47, 83, 214
XmaJI CCTAGG 1 cut(s) 970
XmiI GTMKAC 1 cut(s) 1783
XmnI GAANNNNTTC 2 cut(s) 2202, 2366
XspI CTAG 5 cut(s) 191, 551, 971, 1053, 1508
ZrmI AGTACT 1 cut(s) 1838
Zsp2I ATGCAT 1 cut(s) 2188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.