Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000564

Physical Location & Seq

Genomic Coordinates Forward (+)

28996032 .. 28999928

Gene Structure 3897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG133100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGATACCAAAACCAGCCCGACTAAGTTCATGATTTTCCTTCTCTTCTCATACCTACATCTCAAGACTCATGTCTCCCTCGCAACCGATGCCATCACCGCAGACCAATCTTTCTCCGGTGACGAAACCATTGTCTCCTCAGGTGGTGTTTTTGAACTCGGTTTCTTCAAACCAGGTAAACTTCCAAACTACTACGTAGGCATGTGGTACTACAAGCGAGTAGTAACTGTGAAAACCATAGTCTGGGTGGCAAATAGAAAACAACCAGTCTCCGATAGATTTACTTCGGTGTTGAGGATCATAGATAGTAATTTAGTCCTCGTTGATGAGACCAAAAGTCTTGTTTGGTCCACAAATGTGACCTCCACCACCACCACCACCTCAGGCTCAGCTACTTCTATACAAGCAGTTCTTTTAGACAATGGCAACCTTGTCTTAAGAGTTGGATCCAATTCATCATTACTGCCGTTATGGCAAAGTTTTGACCATCCAGCTCATACTTGGCTAGCAGGAAGTAAAATTGGATTCAACAATGTTACCAAACAAACCCAAAAACTCACTTCATGGAAGAACTCCGAGGATCCTGCACCGGGTCTTTACTCTCTTGAGCTAGACCCGAATGGTAGCAACTCATATATCCTACTGTGGAATAGTTCTAGACAGTACTGGACCAGTGGATCTTGGGACTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

230

Amino Acids

25.61

Weight (kDa)

8.58

Isoelectric Point (pI)

26.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	79 - 190	1.5e-29	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000564)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica	MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica	Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis	pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis	RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata	RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora	Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii	Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa	Rorug01G0022300 Rorug04G0061600
rosa_samantha	Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana	Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	243
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	6 cut(s)	305, 441, 454, 575, 588, 685
AfaI	GTAC	2 cut(s)	209, 665
AfiI	CCNNNNNNNGG	2 cut(s)	243, 590
AflII	CTTAAG	1 cut(s)	436
AgsI	TTSAA	3 cut(s)	155, 169, 529
AhdI	GACNNNNNGTC	1 cut(s)	336
AjnI	CCWGG	1 cut(s)	172
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	3 cut(s)	392, 494, 610
AluI	AGCT	3 cut(s)	392, 494, 610
Alw26I	GTCTC	4 cut(s)	79, 139, 274, 323
AlwI	GGATC	6 cut(s)	305, 441, 454, 575, 588, 685
ArsI	GACNNNNNNTTYG	2 cut(s)	117, 149
AspS9I	GGNCC	2 cut(s)	348, 669
AsuC2I	CCSGG	1 cut(s)	591
AsuHPI	GGTGA	2 cut(s)	88, 131
AsuNHI	GCTAGC	1 cut(s)	505
AvaII	GGWCC	2 cut(s)	348, 669
AxyI	CCTNAGG	2 cut(s)	139, 382
BamHI	GGATCC	2 cut(s)	446, 580
BccI	CCATC	2 cut(s)	101, 495
BceAI	ACGGC	1 cut(s)	451
BcgI	CGANNNNNNTGC	2 cut(s)	566, 600
BciT130I	CCWGG	1 cut(s)	174
BcnI	CCSGG	1 cut(s)	591
BcoDI	GTCTC	4 cut(s)	79, 139, 274, 323
BfaI	CTAG	3 cut(s)	506, 611, 657
BfrI	CTTAAG	1 cut(s)	436
BglI	GCCNNNNNGGC	1 cut(s)	472
BlpI	GCTNAGC	1 cut(s)	388
BmcAI	AGTACT	1 cut(s)	665
Bme1390I	CCNGG	2 cut(s)	174, 591
Bme18I	GGWCC	2 cut(s)	348, 669
BmeRI	GACNNNNNGTC	1 cut(s)	336
BmgT120I	GGNCC	2 cut(s)	348, 669
BmiI	GGNNCC	2 cut(s)	448, 582
BmrFI	CCNGG	2 cut(s)	174, 591
BmsI	GCATC	1 cut(s)	79
BmtI	GCTAGC	1 cut(s)	509
BoxI	GACNNNNGTC	1 cut(s)	71
Bpu1102I	GCTNAGC	1 cut(s)	388
BpuEI	CTTGAG	2 cut(s)	47, 626
BpuMI	CCSGG	1 cut(s)	591
BsaAI	YACGTR	1 cut(s)	196
BsaI	GGTCTC	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	576
BsaWI	WCCGGW	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 590
Bse1I	ACTGG	3 cut(s)	266, 671, 672
Bse21I	CCTNAGG	2 cut(s)	139, 382
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	576
BseGI	GGATG	1 cut(s)	487
BseLI	CCNNNNNNNGG	2 cut(s)	243, 590
BseMII	CTCAG	3 cut(s)	153, 396, 402
BseNI	ACTGG	3 cut(s)	266, 671, 672
BseRI	GAGGAG	1 cut(s)	127
BsgI	GTGCAG	1 cut(s)	570
BsiSI	CCGG	2 cut(s)	117, 590
BslI	CCNNNNNNNGG	2 cut(s)	243, 590
BsmAI	GTCTC	4 cut(s)	79, 139, 274, 323
Bso31I	GGTCTC	1 cut(s)	323
Bsp143I	GATC	4 cut(s)	297, 446, 580, 677
Bsp1720I	GCTNAGC	1 cut(s)	388
BspACI	CCGC	1 cut(s)	99
BspCNI	CTCAG	3 cut(s)	152, 395, 401
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	448, 582
BspOI	GCTAGC	1 cut(s)	509
BspPI	GGATC	6 cut(s)	305, 441, 454, 575, 588, 685
BspTI	CTTAAG	1 cut(s)	436
BspTNI	GGTCTC	1 cut(s)	323
BsrI	ACTGG	3 cut(s)	266, 671, 672
BssECI	CCNNGG	1 cut(s)	576
BssMI	GATC	4 cut(s)	297, 446, 580, 677
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	4 cut(s)	229, 645, 663, 689
Bst6I	CTCTTC	1 cut(s)	50
BstAFI	CTTAAG	1 cut(s)	436
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstBAI	YACGTR	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	4 cut(s)	24, 139, 382, 388
BstF5I	GGATG	1 cut(s)	487
BstKTI	GATC	4 cut(s)	300, 449, 583, 680
BstMAI	GTCTC	4 cut(s)	79, 139, 274, 323
BstMBI	GATC	4 cut(s)	297, 446, 580, 677
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 98, 472
BstNI	CCWGG	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	205
BstPAI	GACNNNNGTC	1 cut(s)	71
BstSCI	CCNGG	2 cut(s)	172, 589
BstSNI	TACGTA	1 cut(s)	196
BstX2I	RGATCY	3 cut(s)	446, 580, 677
BstYI	RGATCY	3 cut(s)	446, 580, 677
Bsu36I	CCTNAGG	2 cut(s)	139, 382
BtsCI	GGATG	1 cut(s)	487
BtsIMutI	CAGTG	1 cut(s)	679
Cac8I	GCNNGC	1 cut(s)	507
CciI	TCATGA	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	348, 669
CsiI	ACCWGGT	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	208, 664
CviAII	CATG	4 cut(s)	31, 71, 202, 564
CviJI	RGCY	6 cut(s)	18, 387, 392, 494, 505, 610
CviKI_1	RGCY	6 cut(s)	18, 387, 392, 494, 505, 610
CviQI	GTAC	2 cut(s)	208, 664
DdeI	CTNAG	4 cut(s)	24, 139, 382, 388
DpnI	GATC	4 cut(s)	299, 448, 582, 679
DpnII	GATC	4 cut(s)	297, 446, 580, 677
DriI	GACNNNNNGTC	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	50
Eam1105I	GACNNNNNGTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	50
Eco105I	TACGTA	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	323
Eco47I	GGWCC	2 cut(s)	348, 669
Eco81I	CCTNAGG	2 cut(s)	139, 382
EcoRII	CCWGG	1 cut(s)	172
FaeI	CATG	4 cut(s)	34, 74, 205, 567
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FatI	CATG	4 cut(s)	30, 70, 201, 563
FokI	GGATG	1 cut(s)	474
FspBI	CTAG	3 cut(s)	506, 611, 657
HapII	CCGG	2 cut(s)	117, 590
Hin1II	CATG	4 cut(s)	34, 74, 205, 567
HinfI	GANTC	2 cut(s)	67, 525
HpaII	CCGG	2 cut(s)	117, 590
HphI	GGTGA	2 cut(s)	88, 131
Hpy166II	GTNNAC	2 cut(s)	179, 351
Hpy188I	TCNGA	2 cut(s)	274, 577
Hpy188III	TCNNGA	4 cut(s)	31, 64, 605, 657
Hpy8I	GTNNAC	2 cut(s)	179, 351
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	4 cut(s)	229, 645, 663, 689
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	1 cut(s)	587
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 98, 472
HpyF3I	CTNAG	4 cut(s)	24, 139, 382, 388
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	4 cut(s)	34, 74, 205, 567
Kzo9I	GATC	4 cut(s)	297, 446, 580, 677
LweI	GCATC	1 cut(s)	79
MabI	ACCWGGT	1 cut(s)	172
MaeI	CTAG	3 cut(s)	506, 611, 657
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	4 cut(s)	119, 223, 358, 535
MalI	GATC	4 cut(s)	299, 448, 582, 679
MboI	GATC	4 cut(s)	297, 446, 580, 677
MboII	GAAGA	3 cut(s)	37, 157, 580
MflI	RGATCY	3 cut(s)	446, 580, 677
MluCI	AATT	3 cut(s)	310, 451, 519
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	1 cut(s)	424
MnlI	CCTC	7 cut(s)	89, 148, 288, 329, 373, 391, 571
MseI	TTAA	2 cut(s)	437, 691
MslI	CAYNNNNRTG	1 cut(s)	356
MspCI	CTTAAG	1 cut(s)	436
MspI	CCGG	2 cut(s)	117, 590
MspR9I	CCNGG	2 cut(s)	174, 591
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	3 cut(s)	89, 98, 472
NciI	CCSGG	1 cut(s)	591
NdeII	GATC	4 cut(s)	297, 446, 580, 677
NheI	GCTAGC	1 cut(s)	505
NlaIII	CATG	4 cut(s)	34, 74, 205, 567
NlaIV	GGNNCC	2 cut(s)	448, 582
NmuCI	GTSAC	2 cut(s)	119, 358
NspI	RCATGY	1 cut(s)	205
OliI	CACNNNNGTG	1 cut(s)	356
PagI	TCATGA	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	525
PflMI	CCANNNNNTGG	1 cut(s)	243
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Ppu21I	YACGTR	1 cut(s)	196
PshAI	GACNNNNGTC	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	448, 582
PspPI	GGNCC	2 cut(s)	348, 669
PsuI	RGATCY	3 cut(s)	446, 580, 677
RsaI	GTAC	2 cut(s)	209, 665
RsaNI	GTAC	2 cut(s)	208, 664
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	2 cut(s)	437, 691
Sau3AI	GATC	4 cut(s)	297, 446, 580, 677
Sau96I	GGNCC	2 cut(s)	348, 669
ScaI	AGTACT	1 cut(s)	665
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	2 cut(s)	174, 591
SexAI	ACCWGGT	1 cut(s)	172
SfaNI	GCATC	1 cut(s)	79
SinI	GGWCC	2 cut(s)	348, 669
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	3 cut(s)	62, 436, 605
SmoI	CTYRAG	3 cut(s)	62, 436, 605
SnaBI	TACGTA	1 cut(s)	196
Sse9I	AATT	3 cut(s)	310, 451, 519
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	3 cut(s)	506, 611, 657
StyD4I	CCNGG	2 cut(s)	172, 589
TaaI	ACNGT	4 cut(s)	229, 645, 663, 689
TaiI	ACGT	1 cut(s)	198
TasI	AATT	3 cut(s)	310, 451, 519
TatI	WGTACW	1 cut(s)	663
TfiI	GAWTC	1 cut(s)	525
Tru1I	TTAA	2 cut(s)	437, 691
Tru9I	TTAA	2 cut(s)	437, 691
TscAI	CASTG	1 cut(s)	679
TseFI	GTSAC	2 cut(s)	119, 358
Tsp45I	GTSAC	2 cut(s)	119, 358
TspDTI	ATGAA	3 cut(s)	19, 444, 552
TspRI	CASTG	1 cut(s)	679
Van91I	CCANNNNNTGG	1 cut(s)	243
Vha464I	CTTAAG	1 cut(s)	436
VpaK11BI	GGWCC	2 cut(s)	348, 669
XbaI	TCTAGA	1 cut(s)	656
XceI	RCATGY	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	2 cut(s)	244, 498
XspI	CTAG	3 cut(s)	506, 611, 657
ZrmI	AGTACT	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.