Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000564

Physical Location & Seq

Genomic Coordinates Reverse (-)

40350080 .. 40353658

Gene Structure 3579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008828

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGATGAGATGATAAATCCTCATGGATCAACTGCCTTCAAGTCCGTTTCAGATTGTTTCCTTATCTCTAGAAGTCACCGATTCAGAGCGACGAAGCTGCCTGCAATCTCAGCTCCTTCTTGGTCCTTCCTCCTCACACCGGCATTCTTTTGTATAATCTGTTATATTGGTTCTTCTATTGTTGTTCAATTGGCTCCCACAACTAATCCCAGGGTTGCAGTTGGTGATGGCTCTTATTGGTGTGAGTCGGCTGATTTTCAGATACATATCTTTCTTCCTTCTCATTCTGTACAAGTTTCTGAATTGTACGGACAGGAGTTATGGGAATATGCCTCTGTAAGCACTTGCAATGCCACGTCTTTGCCCTCATGTAGCTGTTTGAAGGGTTTTGAGCCAAAACTGCTGGGTGATTGGAACTTAAATGATCATGCTGGCGGGTGTTCAAGAATAACCGGTCTTCAGTGTGGAAATGCTACTAGTCTTAATGGGACACAAGACCAGTTTCTAGAAATGACTAGAATGACATTGTCTGAAAATGATCAATATGCAGAGGTCGAGAGTATTGTGGAATGTGAATCCATCTGTTTAAATCACTGCTCTTGCACTGCTTATTCATATGAAAGTGGTGGATGTTCAATTTGGAATGGAGATCTCTTGCATCTGCAACAGCTTGAAGCAAGTGATACTAATGGAAGAACAATGTACATCAGACTTGCAGCTTCCGATTTCGAGAATCCTCCTAAAAGTAGTAATAAGGGTATGAATATTACTTCTAGTTATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

262

Amino Acids

28.59

Weight (kDa)

4.88

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAN_2	PF08276	163 - 219	4.5e-14	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000564)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica	MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica	Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis	pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis	RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata	RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora	Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii	Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa	Rorug01G0022300 Rorug04G0061600
rosa_samantha	Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana	Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	435
AclWI	GGATC	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	443
AfaI	GTAC	3 cut(s)	291, 308, 704
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgeI	ACCGGT	1 cut(s)	452
AgsI	TTSAA	6 cut(s)	40, 188, 382, 444, 636, 674
AhlI	ACTAGT	1 cut(s)	476
AjiI	CACGTC	1 cut(s)	357
AjnI	CCWGG	1 cut(s)	209
AluBI	AGCT	5 cut(s)	97, 113, 375, 670, 719
AluI	AGCT	5 cut(s)	97, 113, 375, 670, 719
AlwI	GGATC	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	97, 716
AsiGI	ACCGGT	1 cut(s)	452
AspS9I	GGNCC	1 cut(s)	123
AsuHPI	GGTGA	3 cut(s)	68, 236, 419
AvaII	GGWCC	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	449
BbvI	GCAGC	2 cut(s)	84, 728
BccI	CCATC	2 cut(s)	221, 587
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BciT130I	CCWGG	1 cut(s)	211
BclI	TGATCA	2 cut(s)	424, 538
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	5 cut(s)	69, 477, 506, 516, 774
BglII	AGATCT	1 cut(s)	649
BisI	GCNGC	2 cut(s)	98, 717
BlsI	GCNGC	2 cut(s)	99, 718
Bme1390I	CCNGG	1 cut(s)	211
Bme18I	GGWCC	1 cut(s)	123
BmgBI	CACGTC	1 cut(s)	357
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	211
BmsI	GCATC	1 cut(s)	667
BpiI	GAAGAC	1 cut(s)	449
BsaBI	GATNNNNATC	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	209, 210
BsaWI	WCCGGW	1 cut(s)	452
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse118I	RCCGGY	2 cut(s)	139, 452
Bse1I	ACTGG	1 cut(s)	499
Bse3DI	GCAATG	1 cut(s)	355
Bse8I	GATNNNNATC	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	211
BseDI	CCNNGG	2 cut(s)	209, 210
BseGI	GGATG	2 cut(s)	10, 635
BseJI	GATNNNNATC	1 cut(s)	266
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMI	GCAATG	1 cut(s)	355
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	499
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	84, 728
BseYI	CCCAGC	1 cut(s)	403
BshTI	ACCGGT	1 cut(s)	452
BsiSI	CCGG	2 cut(s)	140, 453
BslFI	GGGAC	1 cut(s)	502
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	502
BsmI	GAATGC	1 cut(s)	143
Bsp1407I	TGTACA	2 cut(s)	289, 702
Bsp143I	GATC	4 cut(s)	26, 424, 538, 649
BspACI	CCGC	1 cut(s)	435
BspCNI	CTCAG	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	355
BsrFI	RCCGGY	2 cut(s)	139, 452
BsrGI	TGTACA	2 cut(s)	289, 702
BsrI	ACTGG	1 cut(s)	499
BssAI	RCCGGY	2 cut(s)	139, 452
BssECI	CCNNGG	2 cut(s)	209, 210
BssMI	GATC	4 cut(s)	26, 424, 538, 649
Bst2UI	CCWGG	1 cut(s)	211
BstAUI	TGTACA	2 cut(s)	289, 702
BstC8I	GCNNGC	2 cut(s)	102, 433
BstDEI	CTNAG	1 cut(s)	109
BstF5I	GGATG	2 cut(s)	10, 635
BstKTI	GATC	4 cut(s)	29, 427, 541, 652
BstMBI	GATC	4 cut(s)	26, 424, 538, 649
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 400
BstNI	CCWGG	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	209
BstV1I	GCAGC	2 cut(s)	84, 728
BstV2I	GAAGAC	1 cut(s)	449
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
BtrI	CACGTC	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	10, 635
BtsI	GCAGTG	2 cut(s)	592, 603
BtsIMutI	CAGTG	3 cut(s)	467, 592, 603
Cac8I	GCNNGC	2 cut(s)	102, 433
Cfr10I	RCCGGY	2 cut(s)	139, 452
Cfr13I	GGNCC	1 cut(s)	123
Csp6I	GTAC	3 cut(s)	290, 307, 703
CspAI	ACCGGT	1 cut(s)	452
CviAII	CATG	3 cut(s)	23, 369, 428
CviJI	RGCY	9 cut(s)	97, 113, 194, 231, 251, 375, 394, 670, 719
CviKI_1	RGCY	9 cut(s)	97, 113, 194, 231, 251, 375, 394, 670, 719
CviQI	GTAC	3 cut(s)	290, 307, 703
DdeI	CTNAG	1 cut(s)	109
DpnI	GATC	4 cut(s)	28, 426, 540, 651
DpnII	GATC	4 cut(s)	26, 424, 538, 649
DraI	TTTAAA	1 cut(s)	588
Eco47I	GGWCC	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	209
FaeI	CATG	3 cut(s)	26, 372, 431
FaqI	GGGAC	1 cut(s)	502
FatI	CATG	3 cut(s)	22, 368, 427
FauI	CCCGC	1 cut(s)	428
FauNDI	CATATG	1 cut(s)	616
FbaI	TGATCA	2 cut(s)	424, 538
Fnu4HI	GCNGC	2 cut(s)	98, 717
FokI	GGATG	2 cut(s)	17, 642
Fsp4HI	GCNGC	2 cut(s)	98, 717
FspBI	CTAG	5 cut(s)	69, 477, 506, 516, 774
GluI	GCNGC	2 cut(s)	98, 717
GsaI	CCCAGC	1 cut(s)	407
HapII	CCGG	2 cut(s)	140, 453
Hin1II	CATG	3 cut(s)	26, 372, 431
HinfI	GANTC	4 cut(s)	81, 245, 575, 733
HpaII	CCGG	2 cut(s)	140, 453
HphI	GGTGA	3 cut(s)	68, 236, 419
Hpy188I	TCNGA	7 cut(s)	52, 86, 261, 301, 532, 710, 724
Hpy188III	TCNNGA	5 cut(s)	69, 444, 506, 556, 730
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	5 cut(s)	46, 126, 136, 288, 376
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	8 cut(s)	104, 218, 348, 548, 603, 658, 664, 716
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 400
HpyF3I	CTNAG	1 cut(s)	109
HpySE526I	ACGT	1 cut(s)	356
Hsp92II	CATG	3 cut(s)	26, 372, 431
Ksp22I	TGATCA	2 cut(s)	424, 538
Kzo9I	GATC	4 cut(s)	26, 424, 538, 649
LmnI	GCTCC	2 cut(s)	118, 199
LpnPI	CCDG	9 cut(s)	114, 153, 196, 223, 299, 389, 417, 466, 512
Lsp1109I	GCAGC	2 cut(s)	84, 728
LweI	GCATC	1 cut(s)	667
MaeI	CTAG	5 cut(s)	69, 477, 506, 516, 774
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	4 cut(s)	28, 426, 540, 651
MboI	GATC	4 cut(s)	26, 424, 538, 649
MboII	GAAGA	4 cut(s)	165, 266, 449, 705
MfeI	CAATTG	1 cut(s)	188
MflI	RGATCY	1 cut(s)	649
MluCI	AATT	3 cut(s)	188, 302, 636
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	7 cut(s)	30, 140, 143, 343, 376, 544, 747
MseI	TTAA	3 cut(s)	419, 483, 587
MspI	CCGG	2 cut(s)	140, 453
MspR9I	CCNGG	1 cut(s)	211
MunI	CAATTG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	211
MwoI	GCNNNNNNNGC	2 cut(s)	110, 400
NdeI	CATATG	1 cut(s)	616
NdeII	GATC	4 cut(s)	26, 424, 538, 649
NlaIII	CATG	3 cut(s)	26, 372, 431
NlaIV	GGNNCC	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	74
PasI	CCCWGGG	1 cut(s)	210
PctI	GAATGC	1 cut(s)	143
PfeI	GAWTC	3 cut(s)	81, 575, 733
PflFI	GACNNNGTC	1 cut(s)	526
PinAI	ACCGGT	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	99, 718
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	209
PspFI	CCCAGC	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	649
PsyI	GACNNNGTC	1 cut(s)	526
RsaI	GTAC	3 cut(s)	291, 308, 704
RsaNI	GTAC	3 cut(s)	290, 307, 703
SaqAI	TTAA	3 cut(s)	419, 483, 587
SatI	GCNGC	2 cut(s)	98, 717
Sau3AI	GATC	4 cut(s)	26, 424, 538, 649
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	211
SetI	ASST	7 cut(s)	99, 115, 359, 377, 555, 672, 721
SfaNI	GCATC	1 cut(s)	667
SinI	GGWCC	1 cut(s)	123
SpeI	ACTAGT	1 cut(s)	476
Sse9I	AATT	3 cut(s)	188, 302, 636
SsiI	CCGC	1 cut(s)	435
SspI	AATATT	1 cut(s)	766
SspMI	CTAG	5 cut(s)	69, 477, 506, 516, 774
StyD4I	CCNGG	1 cut(s)	209
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	2 cut(s)	555, 729
TasI	AATT	3 cut(s)	188, 302, 636
TatI	WGTACW	2 cut(s)	289, 702
TfiI	GAWTC	3 cut(s)	81, 575, 733
Tru1I	TTAA	3 cut(s)	419, 483, 587
Tru9I	TTAA	3 cut(s)	419, 483, 587
TscAI	CASTG	3 cut(s)	467, 599, 610
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	2 cut(s)	97, 716
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	3 cut(s)	603, 633, 776
TspGWI	ACGGA	2 cut(s)	34, 324
TspRI	CASTG	3 cut(s)	467, 599, 610
Tth111I	GACNNNGTC	1 cut(s)	526
VpaK11BI	GGWCC	1 cut(s)	123
XbaI	TCTAGA	2 cut(s)	68, 505
XspI	CTAG	5 cut(s)	69, 477, 506, 516, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.