pycom09g01930

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
1431457 .. 1432217
761 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g01930.1

Sequence Viewer

Length: 579 bp
ATGGAGAATTCCAAGCAGTGGGAATTGTTTTGGTCTCAACCAAGACAGTGTGCTGTTTATGCTTCTTGTGGGGCTTTCTCCAGTTGCAAACCCACACCCTTGAACTACTGCAAATGTTTGAAGGGCTTTGTGCCAAACCGGCAGAGTGATTGGGACTTGCAGATTTATTCCCGTGGATGTTCAAGAAGAACCAGTGTGAAGTGTGGGAATGCTACGGGAGACGGGTTTCTAAAAGTAAATAGCGAGTCATTGCCTGATAATAGACAATATGAAGGTGCTCTTAGTATCGAAAGTTGTAGATCAGCCTGCTTAAATGAATGCCAGTGCACTGCTTATGGCCATGACAATGACAATGGATGTTCAATCTGGCATGGAGATGTCTTGAATCTGCATGAATTTGAAGCAAATGGCGGTGATGGAAGAACTTTATACATCAGAGCTGCAGCTTCTGACATCAAGGAAAAACGTGTAATTAAGCCGTCCCTTTTGATTGCAATCGTCTCAACAATCACTGGTTTAATTGTTGTCGTTTTTGGCTGTTTCTTATGGAAGAAAACTTTGGAAAAGAAAAGAGCATAA

Protein Analysis

193

Amino Acids

21.38

Weight (kDa)

8.55

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 2 - 46 2.5e-11 S-locus glycoprotein domain
PAN_2 PF08276 68 - 129 4e-15 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa Rorug01G0022300 Rorug04G0061600
rosa_samantha Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 18
AciI CCGC 1 cut(s) 411
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 2 cut(s) 7, 395
AfiI CCNNNNNNNGG 1 cut(s) 18
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 6 cut(s) 103, 121, 183, 363, 385, 401
AjuI GAANNNNNNNTTGG 2 cut(s) 542, 574
AluBI AGCT 2 cut(s) 440, 446
AluI AGCT 2 cut(s) 440, 446
Alw21I GWGCWC 2 cut(s) 280, 329
Alw26I GTCTC 3 cut(s) 39, 213, 505
Alw44I GTGCAC 1 cut(s) 325
AlwNI CAGNNNCTG 1 cut(s) 449
AoxI GGCC 1 cut(s) 337
ApaLI GTGCAC 1 cut(s) 325
ApeKI GCWGC 2 cut(s) 440, 443
ApoI RAATTY 2 cut(s) 7, 395
AsuHPI GGTGA 1 cut(s) 425
BaeGI GKGCMC 1 cut(s) 329
BalI TGGCCA 1 cut(s) 339
Bbv12I GWGCWC 2 cut(s) 280, 329
BbvI GCAGC 2 cut(s) 427, 455
BccI CCATC 1 cut(s) 410
BceAI ACGGC 1 cut(s) 463
BcoDI GTCTC 3 cut(s) 39, 213, 505
BfmI CTRYAG 1 cut(s) 441
BglI GCCNNNNNGGC 1 cut(s) 139
BisI GCNGC 2 cut(s) 441, 444
BlsI GCNGC 2 cut(s) 442, 445
BpmI CTGGAG 1 cut(s) 64
BsaBI GATNNNNATC 1 cut(s) 494
BsaI GGTCTC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 172
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse118I RCCGGY 1 cut(s) 138
Bse1I ACTGG 4 cut(s) 81, 192, 322, 517
Bse3DI GCAATG 1 cut(s) 248
Bse8I GATNNNNATC 1 cut(s) 494
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 2 cut(s) 182, 362
BseJI GATNNNNATC 1 cut(s) 494
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMI GCAATG 1 cut(s) 248
BseNI ACTGG 4 cut(s) 81, 192, 322, 517
BseSI GKGCMC 1 cut(s) 329
BseXI GCAGC 2 cut(s) 427, 455
BshFI GGCC 1 cut(s) 339
BsiHKAI GWGCWC 2 cut(s) 280, 329
BsiSI CCGG 1 cut(s) 139
BslFI GGGAC 2 cut(s) 167, 466
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 3 cut(s) 39, 213, 505
BsmBI CGTCTC 2 cut(s) 213, 505
BsmFI GGGAC 2 cut(s) 167, 466
BsmI GAATGC 2 cut(s) 214, 323
BsnI GGCC 1 cut(s) 339
Bso31I GGTCTC 1 cut(s) 39
Bsp1286I GDGCHC 2 cut(s) 280, 329
Bsp143I GATC 1 cut(s) 299
BspACI CCGC 1 cut(s) 411
BspANI GGCC 1 cut(s) 339
BspMAI CTGCAG 1 cut(s) 445
BspTNI GGTCTC 1 cut(s) 39
BsrDI GCAATG 1 cut(s) 248
BsrFI RCCGGY 1 cut(s) 138
BsrI ACTGG 4 cut(s) 81, 192, 322, 517
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 281
BstDSI CCRYGG 1 cut(s) 172
BstF5I GGATG 2 cut(s) 182, 362
BstKTI GATC 1 cut(s) 302
BstMAI GTCTC 3 cut(s) 39, 213, 505
BstMBI GATC 1 cut(s) 299
BstMWI GCNNNNNNNGC 2 cut(s) 59, 139
BstSFI CTRYAG 1 cut(s) 441
BstSLI GKGCMC 1 cut(s) 329
BstV1I GCAGC 2 cut(s) 427, 455
BsuRI GGCC 1 cut(s) 339
BtgI CCRYGG 1 cut(s) 172
BtsCI GGATG 2 cut(s) 182, 362
BtsI GCAGTG 2 cut(s) 23, 327
BtsIMutI CAGTG 6 cut(s) 23, 53, 199, 327, 329, 510
Cac8I GCNNGC 1 cut(s) 307
CaiI CAGNNNCTG 1 cut(s) 449
Cfr10I RCCGGY 1 cut(s) 138
CviAII CATG 3 cut(s) 341, 371, 392
CviJI RGCY 8 cut(s) 74, 126, 305, 339, 440, 446, 478, 537
CviKI_1 RGCY 8 cut(s) 74, 126, 305, 339, 440, 446, 478, 537
DdeI CTNAG 1 cut(s) 281
DpnI GATC 1 cut(s) 301
DpnII GATC 1 cut(s) 299
EaeI YGGCCR 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 7
Esp3I CGTCTC 2 cut(s) 213, 505
FaeI CATG 3 cut(s) 344, 374, 395
FaiI YATR 9 cut(s) 60, 270, 336, 342, 372, 393, 430, 547, 577
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FaqI GGGAC 2 cut(s) 167, 466
FatI CATG 3 cut(s) 340, 370, 391
Fnu4HI GCNGC 2 cut(s) 441, 444
FokI GGATG 2 cut(s) 189, 369
Fsp4HI GCNGC 2 cut(s) 441, 444
GluI GCNGC 2 cut(s) 441, 444
GsuI CTGGAG 1 cut(s) 64
HaeIII GGCC 1 cut(s) 339
HapII CCGG 1 cut(s) 139
Hin1II CATG 3 cut(s) 344, 374, 395
HinfI GANTC 2 cut(s) 245, 385
HpaII CCGG 1 cut(s) 139
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 2 cut(s) 437, 451
Hpy188III TCNNGA 2 cut(s) 183, 382
Hpy8I GTNNAC 1 cut(s) 327
HpyAV CCTTC 2 cut(s) 115, 266
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4IV ACGT 1 cut(s) 466
HpyCH4V TGCA 7 cut(s) 87, 111, 160, 327, 391, 443, 494
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 139
HpyF3I CTNAG 1 cut(s) 281
HpySE526I ACGT 1 cut(s) 466
Hsp92II CATG 3 cut(s) 344, 374, 395
Kzo9I GATC 1 cut(s) 299
LpnPI CCDG 8 cut(s) 94, 152, 205, 267, 319, 335, 352, 498
Lsp1109I GCAGC 2 cut(s) 427, 455
MaeII ACGT 1 cut(s) 466
MalI GATC 1 cut(s) 301
MboI GATC 1 cut(s) 299
MboII GAAGA 3 cut(s) 198, 432, 562
MhlI GDGCHC 2 cut(s) 280, 329
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 5 cut(s) 7, 23, 395, 471, 519
MluNI TGGCCA 1 cut(s) 339
MlyI GAGTC 1 cut(s) 254
Mox20I TGGCCA 1 cut(s) 339
MscI TGGCCA 1 cut(s) 339
MseI TTAA 3 cut(s) 311, 474, 518
MslI CAYNNNNRTG 2 cut(s) 345, 375
Msp20I TGGCCA 1 cut(s) 339
MspI CCGG 1 cut(s) 139
Mva1269I GAATGC 2 cut(s) 214, 323
MwoI GCNNNNNNNGC 2 cut(s) 59, 139
NdeII GATC 1 cut(s) 299
NlaIII CATG 3 cut(s) 344, 374, 395
PctI GAATGC 2 cut(s) 214, 323
PfeI GAWTC 1 cut(s) 385
PflMI CCANNNNNTGG 1 cut(s) 18
PkrI GCNGC 2 cut(s) 442, 445
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
PstI CTGCAG 1 cut(s) 445
PstNI CAGNNNCTG 1 cut(s) 449
RseI CAYNNNNRTG 2 cut(s) 345, 375
SaqAI TTAA 3 cut(s) 311, 474, 518
SatI GCNGC 2 cut(s) 441, 444
Sau3AI GATC 1 cut(s) 299
SchI GAGTC 1 cut(s) 254
SduI GDGCHC 2 cut(s) 280, 329
SetI ASST 4 cut(s) 277, 442, 448, 469
SfcI CTRYAG 1 cut(s) 441
SmiMI CAYNNNNRTG 2 cut(s) 345, 375
Sse9I AATT 5 cut(s) 7, 23, 395, 471, 519
SsiI CCGC 1 cut(s) 411
TaaI ACNGT 1 cut(s) 48
TaiI ACGT 1 cut(s) 469
TaqI TCGA 1 cut(s) 288
TasI AATT 5 cut(s) 7, 23, 395, 471, 519
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 3 cut(s) 311, 474, 518
Tru9I TTAA 3 cut(s) 311, 474, 518
TscAI CASTG 6 cut(s) 23, 53, 199, 329, 334, 517
TseI GCWGC 2 cut(s) 440, 443
TspDTI ATGAA 3 cut(s) 285, 330, 408
TspRI CASTG 6 cut(s) 23, 53, 199, 329, 334, 517
Van91I CCANNNNNTGG 1 cut(s) 18
VneI GTGCAC 1 cut(s) 325
XapI RAATTY 2 cut(s) 7, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.