Rh1DG149100

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
31130028 .. 31130702
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG149100.1

Sequence Viewer

Length: 675 bp
ATGGATGCATCGGGTCAGGTTAAGCAACTTATTTCCTGGTTGCAACCTCAGGGATGGACCTTGTTTTGGTCTCAGCCGAGGAAACTATGTCAGGTTTATTCCTATTGTGGGGCATTTGGCAGTTGCGATGAGAAGTCCTTGTCCTTCTGTAATTGTTTATATGGTTTTGAGACGAAATTGAAGGTGGATTGGGATTCGCAGGTTTATTCTGGTGGCTGCAAAAGACGGACTGTGCTGAATTTTGCTAATGCTACTACCAATATTGGGAAGCAAGACCGGTTTTTAGAAGTACCAAGCATGTCTTTGCCTGAAAATAAAGTGTGTGTAGATGCTGGGAGTAATGTGCAATGTGAATCAATCTGCTTAAGTAACCGCTCTTGCACTGCTTATTCTTATGATAGCAATGGATGTTCAATATGGATTGGAGATCTCTGGAATCTGCAACAACTCACAGCAGATGACGGTGATGGAAAAACTTTGTACCTCAGACTTGCAGCTTCCGAGTTTAAGGATCCAAAAAGTAAAAAGAGATTGATTATTGGAGTTGTAGTAGGCTCAGCTGTTGGGATAGCAGCTCTTTTAGGCCTTATTGTGGTTAAAGTGTTGAGAAACAGAAATAAAGTGATTGGAAAATCAGTGGAGGGTTCATTGGTGGCATTTGAGTATAGAGTATAG

Protein Analysis

224

Amino Acids

24.73

Weight (kDa)

8.72

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 1 - 59 4.9e-14 S-locus glycoprotein domain
PAN_2 PF08276 90 - 146 1.3e-13 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa Rorug01G0022300 Rorug04G0061600
rosa_samantha Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 190
AccBSI CCGCTC 1 cut(s) 375
AciI CCGC 1 cut(s) 373
AclWI GGATC 2 cut(s) 506, 519
AcsI RAATTY 1 cut(s) 238
AfaI GTAC 2 cut(s) 291, 482
AfiI CCNNNNNNNGG 4 cut(s) 66, 108, 264, 592
AflII CTTAAG 1 cut(s) 364
AgeI ACCGGT 1 cut(s) 276
AgsI TTSAA 2 cut(s) 181, 414
AjnI CCWGG 1 cut(s) 35
AluBI AGCT 3 cut(s) 497, 560, 575
AluI AGCT 3 cut(s) 497, 560, 575
Alw26I GTCTC 2 cut(s) 75, 164
AlwI GGATC 2 cut(s) 506, 519
AoxI GGCC 1 cut(s) 583
ApeKI GCWGC 3 cut(s) 216, 494, 572
ApoI RAATTY 1 cut(s) 238
AsiGI ACCGGT 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 476
AvaII GGWCC 1 cut(s) 57
AxyI CCTNAGG 1 cut(s) 48
BamHI GGATCC 1 cut(s) 511
BbvI GCAGC 3 cut(s) 203, 506, 584
BccI CCATC 2 cut(s) 48, 461
BciT130I CCWGG 1 cut(s) 37
BcoDI GTCTC 2 cut(s) 75, 164
BfrI CTTAAG 1 cut(s) 364
BfuAI ACCTGC 1 cut(s) 190
BglII AGATCT 1 cut(s) 427
BisI GCNGC 3 cut(s) 217, 495, 573
BlpI GCTNAGC 1 cut(s) 556
BlsI GCNGC 3 cut(s) 218, 496, 574
Bme1390I CCNGG 1 cut(s) 37
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 513
BmrFI CCNGG 1 cut(s) 37
BmsI GCATC 2 cut(s) 17, 319
Bpu1102I GCTNAGC 1 cut(s) 556
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 77
BsaWI WCCGGW 1 cut(s) 276
BsaXI ACNNNNNCTCC 2 cut(s) 534, 564
Bsc4I CCNNNNNNNGG 4 cut(s) 66, 108, 264, 592
Bse118I RCCGGY 1 cut(s) 276
Bse21I CCTNAGG 1 cut(s) 48
Bse3DI GCAATG 2 cut(s) 353, 409
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 77
BseGI GGATG 3 cut(s) 10, 59, 413
BseLI CCNNNNNNNGG 4 cut(s) 66, 108, 264, 592
BseMI GCAATG 2 cut(s) 353, 409
BseMII CTCAG 4 cut(s) 62, 86, 499, 570
BseXI GCAGC 3 cut(s) 203, 506, 584
BseYI CCCAGC 1 cut(s) 332
BshFI GGCC 1 cut(s) 585
BshTI ACCGGT 1 cut(s) 276
BsiSI CCGG 1 cut(s) 277
BslI CCNNNNNNNGG 4 cut(s) 66, 108, 264, 592
BsmAI GTCTC 2 cut(s) 75, 164
BsmBI CGTCTC 1 cut(s) 164
BsnI GGCC 1 cut(s) 585
Bso31I GGTCTC 1 cut(s) 75
Bsp143I GATC 2 cut(s) 427, 511
Bsp1720I GCTNAGC 1 cut(s) 556
BspACI CCGC 1 cut(s) 373
BspANI GGCC 1 cut(s) 585
BspCNI CTCAG 4 cut(s) 61, 85, 498, 569
BspLI GGNNCC 1 cut(s) 513
BspMI ACCTGC 1 cut(s) 190
BspPI GGATC 2 cut(s) 506, 519
BspTI CTTAAG 1 cut(s) 364
BspTNI GGTCTC 1 cut(s) 75
BsrBI CCGCTC 1 cut(s) 375
BsrDI GCAATG 2 cut(s) 353, 409
BsrFI RCCGGY 1 cut(s) 276
BssAI RCCGGY 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 2 cut(s) 427, 511
Bst2UI CCWGG 1 cut(s) 37
Bst4CI ACNGT 2 cut(s) 232, 464
BstAFI CTTAAG 1 cut(s) 364
BstDEI CTNAG 4 cut(s) 48, 72, 485, 556
BstF5I GGATG 3 cut(s) 10, 59, 413
BstKTI GATC 2 cut(s) 430, 514
BstMAI GTCTC 2 cut(s) 75, 164
BstMBI GATC 2 cut(s) 427, 511
BstNI CCWGG 1 cut(s) 37
BstNSI RCATGY 1 cut(s) 301
BstSCI CCNGG 1 cut(s) 35
BstV1I GCAGC 3 cut(s) 203, 506, 584
BstX2I RGATCY 2 cut(s) 427, 511
BstYI RGATCY 2 cut(s) 427, 511
Bsu36I CCTNAGG 1 cut(s) 48
BsuRI GGCC 1 cut(s) 585
BtgZI GCGATG 1 cut(s) 141
BtsCI GGATG 3 cut(s) 10, 59, 413
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 2 cut(s) 381, 642
BveI ACCTGC 1 cut(s) 190
Cfr10I RCCGGY 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 57
Csp6I GTAC 2 cut(s) 290, 481
CspAI ACCGGT 1 cut(s) 276
CviAII CATG 1 cut(s) 298
CviJI RGCY 7 cut(s) 76, 216, 497, 555, 560, 575, 585
CviKI_1 RGCY 7 cut(s) 76, 216, 497, 555, 560, 575, 585
CviQI GTAC 2 cut(s) 290, 481
DdeI CTNAG 4 cut(s) 48, 72, 485, 556
DpnI GATC 2 cut(s) 429, 513
DpnII GATC 2 cut(s) 427, 511
Eco147I AGGCCT 1 cut(s) 585
Eco31I GGTCTC 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 57
Eco81I CCTNAGG 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 35
EcoT22I ATGCAT 1 cut(s) 10
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 1 cut(s) 301
FaiI YATR 8 cut(s) 88, 160, 162, 299, 396, 418, 666, 673
FalI AAGNNNNNCTT 2 cut(s) 286, 318
FatI CATG 1 cut(s) 297
Fnu4HI GCNGC 3 cut(s) 217, 495, 573
FokI GGATG 3 cut(s) 17, 66, 420
Fsp4HI GCNGC 3 cut(s) 217, 495, 573
GluI GCNGC 3 cut(s) 217, 495, 573
GsaI CCCAGC 1 cut(s) 336
HaeIII GGCC 1 cut(s) 585
HapII CCGG 1 cut(s) 277
Hin1II CATG 1 cut(s) 301
HinfI GANTC 3 cut(s) 194, 353, 436
HpaII CCGG 1 cut(s) 277
HphI GGTGA 1 cut(s) 476
Hpy188I TCNGA 2 cut(s) 488, 502
Hpy188III TCNNGA 1 cut(s) 433
HpyAV CCTTC 2 cut(s) 154, 175
HpyCH4III ACNGT 2 cut(s) 232, 464
HpyCH4V TGCA 7 cut(s) 8, 43, 219, 346, 381, 442, 494
HpyF3I CTNAG 4 cut(s) 48, 72, 485, 556
Hsp92II CATG 1 cut(s) 301
Kzo9I GATC 2 cut(s) 427, 511
Lsp1109I GCAGC 3 cut(s) 203, 506, 584
LweI GCATC 2 cut(s) 17, 319
MaeIII GTNAC 1 cut(s) 368
MalI GATC 2 cut(s) 429, 513
MbiI CCGCTC 1 cut(s) 375
MboI GATC 2 cut(s) 427, 511
MflI RGATCY 2 cut(s) 427, 511
MluCI AATT 3 cut(s) 151, 176, 238
MnlI CCTC 4 cut(s) 57, 72, 494, 634
Mph1103I ATGCAT 1 cut(s) 10
MseI TTAA 4 cut(s) 21, 365, 507, 597
MspA1I CMGCKG 1 cut(s) 560
MspCI CTTAAG 1 cut(s) 364
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 37
MvaI CCWGG 1 cut(s) 37
NdeII GATC 2 cut(s) 427, 511
NlaIII CATG 1 cut(s) 301
NlaIV GGNNCC 1 cut(s) 513
NmeAIII GCCGAG 1 cut(s) 102
NsiI ATGCAT 1 cut(s) 10
NspI RCATGY 1 cut(s) 301
PceI AGGCCT 1 cut(s) 585
PfeI GAWTC 3 cut(s) 194, 353, 436
PinAI ACCGGT 1 cut(s) 276
PkrI GCNGC 3 cut(s) 218, 496, 574
Psp6I CCWGG 1 cut(s) 35
PspFI CCCAGC 1 cut(s) 332
PspGI CCWGG 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 513
PspPI GGNCC 1 cut(s) 57
PsuI RGATCY 2 cut(s) 427, 511
PvuII CAGCTG 1 cut(s) 560
RsaI GTAC 2 cut(s) 291, 482
RsaNI GTAC 2 cut(s) 290, 481
SaqAI TTAA 4 cut(s) 21, 365, 507, 597
SatI GCNGC 3 cut(s) 217, 495, 573
Sau3AI GATC 2 cut(s) 427, 511
Sau96I GGNCC 1 cut(s) 57
ScrFI CCNGG 1 cut(s) 37
SfaNI GCATC 2 cut(s) 17, 319
SinI GGWCC 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
Sse9I AATT 3 cut(s) 151, 176, 238
SseBI AGGCCT 1 cut(s) 585
SsiI CCGC 1 cut(s) 373
SspI AATATT 1 cut(s) 262
StuI AGGCCT 1 cut(s) 585
StyD4I CCNGG 1 cut(s) 35
TaaI ACNGT 2 cut(s) 232, 464
TasI AATT 3 cut(s) 151, 176, 238
TfiI GAWTC 3 cut(s) 194, 353, 436
Tru1I TTAA 4 cut(s) 21, 365, 507, 597
Tru9I TTAA 4 cut(s) 21, 365, 507, 597
TscAI CASTG 2 cut(s) 388, 642
TseI GCWGC 3 cut(s) 216, 494, 572
TspDTI ATGAA 1 cut(s) 636
TspGWI ACGGA 1 cut(s) 241
TspRI CASTG 2 cut(s) 388, 642
Vha464I CTTAAG 1 cut(s) 364
VpaK11BI GGWCC 1 cut(s) 57
XapI RAATTY 1 cut(s) 238
XceI RCATGY 1 cut(s) 301
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.