Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000564

Physical Location & Seq

Genomic Coordinates Forward (+)

7266059 .. 7267026

Gene Structure 968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1088500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCGGAGGCGGGGCCCGGGAAATTTGTTTTGTGCAGCCATGGGTACCAAAACCAAGCAAAGTTTGGTGCTTTCAGCTATTTTTTATGCCTATTTCTCAAGCTCCATGTTTCCAGTGCAACTGACTCCGTCACTGCAAACCAATCTCTCTCCGGTGATCAAACCATTGTCTCTGCAGGTGGGATTTTTGAGCTCGGTTTCTTCGAATTAGGTGGCCGCTACTACATCAGTACATGGTACTACAACCAAGTGGTATCTGCGAGTACCATAGTTTGGGTGGCGAATAGGGAGCAACCGGTCTTCGATAAATTTTCTTCAGTGTTGAGGATCTTAGACGGTAATTTACTTCCCTCCAATGAGTCAAAAACTCCAGTTTGGTCCACAAATGTGACCTCCAACAACTTCTCTTCAGTAAAAGCAGTTCTATTGGATAGTGGGAATCTTGCATTCTTTGATGAATCTATTTCATCCTCAGAGCCTTTATGGCAAAGCTTTGATCATCCGACTCATACATGGTTACCCGGAGGTAAAATTGGATTCAACAAAATTACCAAACAAACCCAAATTCTCACTTCATGGAAGAATTCCGAGGATACTTCACCAGGTCTTTTCTCTCTTGAGATGAACCGAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

212

Amino Acids

23.31

Weight (kDa)

5.53

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	89 - 194	1.8e-32	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000564)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica	MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica	Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis	pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis	RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata	RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora	Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii	Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa	Rorug01G0022300 Rorug04G0061600
rosa_samantha	Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana	Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	167
Acc36I	ACCTGC	1 cut(s)	167
Acc65I	GGTACC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	45
AccB7I	CCANNNNNTGG	1 cut(s)	273
AciI	CCGC	3 cut(s)	5, 11, 217
AclWI	GGATC	1 cut(s)	335
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	4 cut(s)	23, 308, 564, 583
AcuI	CTGAAG	2 cut(s)	300, 393
AfaI	GTAC	4 cut(s)	47, 232, 239, 265
AfiI	CCNNNNNNNGG	1 cut(s)	273
AgeI	ACCGGT	1 cut(s)	295
AgsI	TTSAA	1 cut(s)	541
AjnI	CCWGG	1 cut(s)	601
AleI	CACNNNNGTG	1 cut(s)	386
AluBI	AGCT	4 cut(s)	78, 103, 193, 492
AluI	AGCT	4 cut(s)	78, 103, 193, 492
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	17
AoxI	GGCC	2 cut(s)	14, 214
ApaI	GGGCCC	1 cut(s)	18
ApeKI	GCWGC	1 cut(s)	36
ApoI	RAATTY	4 cut(s)	23, 308, 564, 583
AsiGI	ACCGGT	1 cut(s)	295
Asp718I	GGTACC	1 cut(s)	45
AspS9I	GGNCC	3 cut(s)	14, 15, 378
AsuC2I	CCSGG	3 cut(s)	18, 19, 522
AsuHPI	GGTGA	2 cut(s)	167, 591
AsuII	TTCGAA	1 cut(s)	204
AvaI	CYCGRG	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	378
BaeGI	GKGCMC	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	45
BanII	GRGCYC	2 cut(s)	18, 195
BbsI	GAAGAC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	48
BciT130I	CCWGG	1 cut(s)	603
BciVI	GTATCC	1 cut(s)	586
BclI	TGATCA	2 cut(s)	157, 496
BcnI	CCSGG	3 cut(s)	18, 19, 522
BcoDI	GTCTC	1 cut(s)	175
BfmI	CTRYAG	1 cut(s)	174
BfuAI	ACCTGC	1 cut(s)	167
BfuI	GTATCC	1 cut(s)	586
BglI	GCCNNNNNGGC	1 cut(s)	484
BisI	GCNGC	2 cut(s)	37, 217
BlsI	GCNGC	2 cut(s)	38, 218
Bme1390I	CCNGG	4 cut(s)	18, 19, 522, 603
Bme18I	GGWCC	1 cut(s)	378
BmeT110I	CYCGRG	1 cut(s)	17
BmgT120I	GGNCC	3 cut(s)	14, 15, 378
BmiI	GGNNCC	3 cut(s)	15, 16, 47
BmrFI	CCNGG	4 cut(s)	18, 19, 522, 603
BpiI	GAAGAC	1 cut(s)	292
BpmI	CTGGAG	1 cut(s)	354
Bpu14I	TTCGAA	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	83
BpuMI	CCSGG	3 cut(s)	18, 19, 522
BsaJI	CCNNGG	3 cut(s)	17, 40, 588
BsaWI	WCCGGW	2 cut(s)	152, 295
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse118I	RCCGGY	1 cut(s)	295
Bse1I	ACTGG	2 cut(s)	114, 371
BseBI	CCWGG	1 cut(s)	603
BseDI	CCNNGG	3 cut(s)	17, 40, 588
BseGI	GGATG	2 cut(s)	467, 499
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	2 cut(s)	114, 371
BseSI	GKGCMC	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	48
BsgI	GTGCAG	1 cut(s)	55
BshFI	GGCC	2 cut(s)	16, 216
BshNI	GGYRCC	1 cut(s)	45
BshTI	ACCGGT	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	4 cut(s)	18, 153, 296, 522
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmAI	GTCTC	1 cut(s)	175
BsmI	GAATGC	1 cut(s)	446
BsnI	GGCC	2 cut(s)	16, 216
BsoBI	CYCGRG	1 cut(s)	17
Bsp119I	TTCGAA	1 cut(s)	204
Bsp120I	GGGCCC	1 cut(s)	14
Bsp1286I	GDGCHC	2 cut(s)	18, 195
Bsp143I	GATC	3 cut(s)	157, 327, 496
Bsp19I	CCATGG	1 cut(s)	40
BspACI	CCGC	3 cut(s)	5, 11, 217
BspANI	GGCC	2 cut(s)	16, 216
BspCNI	CTCAG	1 cut(s)	485
BspLI	GGNNCC	3 cut(s)	15, 16, 47
BspMAI	CTGCAG	1 cut(s)	178
BspMI	ACCTGC	1 cut(s)	167
BspPI	GGATC	1 cut(s)	335
BspT104I	TTCGAA	1 cut(s)	204
BspT107I	GGYRCC	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	295
BsrI	ACTGG	2 cut(s)	114, 371
BssAI	RCCGGY	1 cut(s)	295
BssECI	CCNNGG	3 cut(s)	17, 40, 588
BssMI	GATC	3 cut(s)	157, 327, 496
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	1 cut(s)	412
BstBI	TTCGAA	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	331, 472
BstDSI	CCRYGG	1 cut(s)	40
BstEII	GGTNACC	1 cut(s)	516
BstF5I	GGATG	2 cut(s)	467, 499
BstKTI	GATC	3 cut(s)	160, 330, 499
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	3 cut(s)	157, 327, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	484
BstNI	CCWGG	1 cut(s)	603
BstPI	GGTNACC	1 cut(s)	516
BstSCI	CCNGG	4 cut(s)	16, 17, 520, 601
BstSFI	CTRYAG	1 cut(s)	174
BstSLI	GKGCMC	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	48
BstV2I	GAAGAC	1 cut(s)	292
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
BsuI	GTATCC	1 cut(s)	586
BsuRI	GGCC	2 cut(s)	16, 216
BtgI	CCRYGG	1 cut(s)	40
BtsCI	GGATG	2 cut(s)	467, 499
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	3 cut(s)	121, 132, 324
BveI	ACCTGC	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	295
Cfr13I	GGNCC	3 cut(s)	14, 15, 378
Cfr9I	CCCGGG	1 cut(s)	17
CsiI	ACCWGGT	1 cut(s)	601
Csp6I	GTAC	4 cut(s)	46, 231, 238, 264
CspAI	ACCGGT	1 cut(s)	295
CviAII	CATG	5 cut(s)	41, 107, 234, 513, 576
CviJI	RGCY	8 cut(s)	16, 39, 78, 103, 193, 216, 478, 492
CviKI_1	RGCY	8 cut(s)	16, 39, 78, 103, 193, 216, 478, 492
CviQI	GTAC	4 cut(s)	46, 231, 238, 264
DdeI	CTNAG	2 cut(s)	331, 472
DpnI	GATC	3 cut(s)	159, 329, 498
DpnII	GATC	3 cut(s)	157, 327, 496
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	412
EarI	CTCTTC	1 cut(s)	412
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	40
Eco24I	GRGCYC	2 cut(s)	18, 195
Eco47I	GGWCC	1 cut(s)	378
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	2 cut(s)	300, 393
Eco88I	CYCGRG	1 cut(s)	17
Eco91I	GGTNACC	1 cut(s)	516
EcoICRI	GAGCTC	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	14
EcoO65I	GGTNACC	1 cut(s)	516
EcoRI	GAATTC	1 cut(s)	583
EcoRII	CCWGG	1 cut(s)	601
EcoT14I	CCWWGG	1 cut(s)	40
EcoT38I	GRGCYC	2 cut(s)	18, 195
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	5 cut(s)	44, 110, 237, 516, 579
FaiI	YATR	9 cut(s)	42, 88, 108, 235, 269, 484, 510, 514, 577
FatI	CATG	5 cut(s)	40, 106, 233, 512, 575
FauI	CCCGC	1 cut(s)	4
FbaI	TGATCA	2 cut(s)	157, 496
Fnu4HI	GCNGC	2 cut(s)	37, 217
FokI	GGATG	2 cut(s)	454, 486
FriOI	GRGCYC	2 cut(s)	18, 195
Fsp4HI	GCNGC	2 cut(s)	37, 217
GluI	GCNGC	2 cut(s)	37, 217
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	2 cut(s)	16, 216
HapII	CCGG	4 cut(s)	18, 153, 296, 522
Hin1II	CATG	5 cut(s)	44, 110, 237, 516, 579
HindIII	AAGCTT	1 cut(s)	490
HinfI	GANTC	6 cut(s)	125, 359, 439, 458, 505, 537
HpaII	CCGG	4 cut(s)	18, 153, 296, 522
HphI	GGTGA	2 cut(s)	167, 591
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	3 cut(s)	475, 504, 589
Hpy188III	TCNNGA	1 cut(s)	617
Hpy8I	GTNNAC	1 cut(s)	381
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4V	TGCA	5 cut(s)	36, 119, 137, 176, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	484
HpyF3I	CTNAG	2 cut(s)	331, 472
Hsp92II	CATG	5 cut(s)	44, 110, 237, 516, 579
KpnI	GGTACC	1 cut(s)	49
Ksp22I	TGATCA	2 cut(s)	157, 496
Kzo9I	GATC	3 cut(s)	157, 327, 496
LmnI	GCTCC	2 cut(s)	108, 289
LpnPI	CCDG	9 cut(s)	31, 127, 162, 166, 309, 384, 535, 588, 615
Lsp1109I	GCAGC	1 cut(s)	48
MabI	ACCWGGT	1 cut(s)	601
MaeIII	GTNAC	3 cut(s)	130, 388, 516
MalI	GATC	3 cut(s)	159, 329, 498
MboI	GATC	3 cut(s)	157, 327, 496
MboII	GAAGA	5 cut(s)	193, 292, 306, 399, 592
MflI	RGATCY	1 cut(s)	327
MhlI	GDGCHC	2 cut(s)	18, 195
MluCI	AATT	8 cut(s)	23, 206, 308, 340, 531, 546, 564, 583
MlyI	GAGTC	3 cut(s)	119, 368, 499
MmeI	TCCRAC	2 cut(s)	420, 527
MnlI	CCTC	6 cut(s)	318, 361, 403, 481, 518, 583
MslI	CAYNNNNRTG	1 cut(s)	386
MspI	CCGG	4 cut(s)	18, 153, 296, 522
MspR9I	CCNGG	4 cut(s)	18, 19, 522, 603
Mva1269I	GAATGC	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	603
MwoI	GCNNNNNNNGC	1 cut(s)	484
NciI	CCSGG	3 cut(s)	18, 19, 522
NcoI	CCATGG	1 cut(s)	40
NdeII	GATC	3 cut(s)	157, 327, 496
NlaIII	CATG	5 cut(s)	44, 110, 237, 516, 579
NlaIV	GGNNCC	3 cut(s)	15, 16, 47
NmuCI	GTSAC	2 cut(s)	130, 388
NspV	TTCGAA	1 cut(s)	204
OliI	CACNNNNGTG	1 cut(s)	386
PaqCI	CACCTGC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PctI	GAATGC	1 cut(s)	446
PfeI	GAWTC	3 cut(s)	439, 458, 537
PflFI	GACNNNGTC	1 cut(s)	128
PflMI	CCANNNNNTGG	1 cut(s)	273
PinAI	ACCGGT	1 cut(s)	295
PkrI	GCNGC	2 cut(s)	38, 218
PleI	GAGTC	3 cut(s)	119, 367, 499
PpsI	GAGTC	3 cut(s)	119, 367, 499
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	601
PspEI	GGTNACC	1 cut(s)	516
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	3 cut(s)	15, 16, 47
PspOMI	GGGCCC	1 cut(s)	14
PspPI	GGNCC	3 cut(s)	14, 15, 378
PsrI	GAACNNNNNNTAC	2 cut(s)	405, 437
PstI	CTGCAG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	327
PsyI	GACNNNGTC	1 cut(s)	128
RsaI	GTAC	4 cut(s)	47, 232, 239, 265
RsaNI	GTAC	4 cut(s)	46, 231, 238, 264
RseI	CAYNNNNRTG	1 cut(s)	386
SacI	GAGCTC	1 cut(s)	195
SatI	GCNGC	2 cut(s)	37, 217
Sau3AI	GATC	3 cut(s)	157, 327, 496
Sau96I	GGNCC	3 cut(s)	14, 15, 378
SchI	GAGTC	3 cut(s)	119, 368, 499
ScrFI	CCNGG	4 cut(s)	18, 19, 522, 603
SduI	GDGCHC	2 cut(s)	18, 195
SetI	ASST	9 cut(s)	80, 105, 181, 195, 214, 395, 494, 529, 607
SexAI	ACCWGGT	1 cut(s)	601
SfcI	CTRYAG	1 cut(s)	174
SfuI	TTCGAA	1 cut(s)	204
SinI	GGWCC	1 cut(s)	378
SmaI	CCCGGG	1 cut(s)	19
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	2 cut(s)	98, 617
SmoI	CTYRAG	2 cut(s)	98, 617
Sse9I	AATT	8 cut(s)	23, 206, 308, 340, 531, 546, 564, 583
SsiI	CCGC	3 cut(s)	5, 11, 217
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	4 cut(s)	16, 17, 520, 601
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	338
TaqI	TCGA	2 cut(s)	204, 303
TasI	AATT	8 cut(s)	23, 206, 308, 340, 531, 546, 564, 583
TatI	WGTACW	1 cut(s)	230
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	3 cut(s)	439, 458, 537
TscAI	CASTG	3 cut(s)	121, 139, 324
TseFI	GTSAC	2 cut(s)	130, 388
TseI	GCWGC	1 cut(s)	36
Tsp45I	GTSAC	2 cut(s)	130, 388
TspDTI	ATGAA	3 cut(s)	456, 471, 564
TspGWI	ACGGA	1 cut(s)	118
TspMI	CCCGGG	1 cut(s)	17
TspRI	CASTG	3 cut(s)	121, 139, 324
Tth111I	GACNNNGTC	1 cut(s)	128
Van91I	CCANNNNNTGG	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	378
XapI	RAATTY	4 cut(s)	23, 308, 564, 583
XcmI	CCANNNNNNNNNTGG	2 cut(s)	62, 274
XmaI	CCCGGG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.