RchiOBHm_Chr7g0238591

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000564
Physical Location & Seq
Forward (+)
64070221 .. 64073042
2822 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21380

Sequence Viewer

Length: 198 bp
ATGGATGAGGTGATAAATCCTCATAAATCAAATGCCTTCATGTCCGTTTCAGATTGTGTCCTTATCTCTAGAAGTCACCGATTCAAAGCGACGAAGCTGCCTGCAATCTCAGCTCCTTCTTCCTCACACCGGCTCAATTCAAGTTTTTGTGACAGTCTAAAGAGAATCAAAGAGGGTCTACATTGGAGGCTTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.35

Weight (kDa)

9.89

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa Rorug01G0022300 Rorug04G0061600
rosa_samantha Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 196
AccI GTMKAC 1 cut(s) 178
AfiI CCNNNNNNNGG 1 cut(s) 129
AgsI TTSAA 2 cut(s) 85, 141
AluBI AGCT 2 cut(s) 97, 113
AluI AGCT 2 cut(s) 97, 113
ApeKI GCWGC 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 22, 68
BbvI GCAGC 1 cut(s) 84
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BfaI CTAG 1 cut(s) 69
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse118I RCCGGY 1 cut(s) 129
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 123
BseXI GCAGC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 129
BssAI RCCGGY 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 84
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 102
Cfr10I RCCGGY 1 cut(s) 129
CviAII CATG 1 cut(s) 40
CviJI RGCY 4 cut(s) 97, 113, 133, 190
CviKI_1 RGCY 4 cut(s) 97, 113, 133, 190
DdeI CTNAG 1 cut(s) 109
FaeI CATG 1 cut(s) 43
FaiI YATR 3 cut(s) 24, 41, 196
FatI CATG 1 cut(s) 39
FblI GTMKAC 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 98
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 98
FspBI CTAG 1 cut(s) 69
GluI GCNGC 1 cut(s) 98
HapII CCGG 1 cut(s) 130
Hin1II CATG 1 cut(s) 43
HinfI GANTC 2 cut(s) 81, 165
HpaII CCGG 1 cut(s) 130
HphI GGTGA 2 cut(s) 22, 68
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 1 cut(s) 69
Hpy8I GTNNAC 1 cut(s) 179
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 46, 126
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 109
Hsp92II CATG 1 cut(s) 43
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 2 cut(s) 114, 143
Lsp1109I GCAGC 1 cut(s) 84
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 74, 149
MboII GAAGA 1 cut(s) 111
MluCI AATT 1 cut(s) 136
MnlI CCTC 4 cut(s) 30, 133, 166, 180
MspI CCGG 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 110
NlaIII CATG 1 cut(s) 43
NmuCI GTSAC 2 cut(s) 74, 149
PfeI GAWTC 2 cut(s) 81, 165
PkrI GCNGC 1 cut(s) 99
PsiI TTATAA 1 cut(s) 196
SatI GCNGC 1 cut(s) 98
SetI ASST 3 cut(s) 12, 99, 115
SgeI CNNG 5 cut(s) 52, 81, 113, 142, 153
Sse9I AATT 1 cut(s) 136
SspMI CTAG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 155
TasI AATT 1 cut(s) 136
TfiI GAWTC 2 cut(s) 81, 165
TseFI GTSAC 2 cut(s) 74, 149
TseI GCWGC 1 cut(s) 97
Tsp45I GTSAC 2 cut(s) 74, 149
TspDTI ATGAA 1 cut(s) 28
TspGWI ACGGA 1 cut(s) 34
XbaI TCTAGA 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 178
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.