Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000564

Physical Location & Seq

Genomic Coordinates Reverse (-)

5805685 .. 5806170

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG036100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGATACCAAGAGCAACCCAATTACGTTGATGCTTTCCCTTTTCTTCTTGTGCCTATGTCTCAAGTCCCATATCTGCTTTGGAGCTGACACCATCACAGCAAACCAGTCTCTCTCTGGTGACCAAACCATTGTTTCAGCTGGTGGGAAATTTGAACTGGGTTTCTTCAAGGCAGGTAATACTGCAAACTACTACATAGGCATGTGGTACTACAAGAAACTAGTACCAGACCAAACCATAGTCTGGTTGGCCAATAGGGTGCAGCCAGTCTCTGATAGATTTTCTTCAGAGTTGAGAATCTCAGATGGTAATTTGGTACTGTTTAATGAGTCCAAAACCCCAATTTGGTCAACAGAGGTCAGTTCAAGTTCAGCTTCTTCTATACTTTTAGATAATGGAAACCTTGTGCTAAGAGCTGGGTCTTTGCCTTTATGGCAAAGTTTTGATCAACCAACCCATGCTTTTCTACTCCTCAAATATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

161

Amino Acids

17.89

Weight (kDa)

7.69

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	79 - 156	1.2e-20	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000564)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica	MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica	Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis	pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis	RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata	RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora	Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii	Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa	Rorug01G0022300 Rorug04G0061600
rosa_samantha	Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana	Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	164
AccB7I	CCANNNNNTGG	1 cut(s)	243
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	3 cut(s)	209, 225, 318
AfiI	CCNNNNNNNGG	2 cut(s)	243, 345
AgsI	TTSAA	3 cut(s)	155, 169, 366
AhlI	ACTAGT	1 cut(s)	220
AluBI	AGCT	4 cut(s)	86, 140, 374, 416
AluI	AGCT	4 cut(s)	86, 140, 374, 416
Alw26I	GTCTC	3 cut(s)	65, 114, 274
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	131
BalI	TGGCCA	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	2 cut(s)	101, 299
BclI	TGATCA	1 cut(s)	445
BcoDI	GTCTC	3 cut(s)	65, 114, 274
BcuI	ACTAGT	1 cut(s)	220
BfaI	CTAG	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	164
BglI	GCCNNNNNGGC	1 cut(s)	433
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
BmrI	ACTGGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	21
BmuI	ACTGGG	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 345
Bse1I	ACTGG	3 cut(s)	106, 162, 266
BseLI	CCNNNNNNNGG	2 cut(s)	243, 345
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	3 cut(s)	106, 162, 266
BseRI	GAGGAG	1 cut(s)	461
BseXI	GCAGC	1 cut(s)	274
BseYI	CCCAGC	1 cut(s)	416
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	1 cut(s)	251
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	243, 345
BsmAI	GTCTC	3 cut(s)	65, 114, 274
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	251
Bsp143I	GATC	1 cut(s)	445
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	1 cut(s)	314
BspMI	ACCTGC	1 cut(s)	164
BsrI	ACTGG	3 cut(s)	106, 162, 266
BssMI	GATC	1 cut(s)	445
Bst4CI	ACNGT	1 cut(s)	321
BstDEI	CTNAG	2 cut(s)	301, 410
BstEII	GGTNACC	1 cut(s)	119
BstKTI	GATC	1 cut(s)	448
BstMAI	GTCTC	3 cut(s)	65, 114, 274
BstMBI	GATC	1 cut(s)	445
BstMWI	GCNNNNNNNGC	1 cut(s)	433
BstNSI	RCATGY	1 cut(s)	205
BstPI	GGTNACC	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	251
BveI	ACCTGC	1 cut(s)	164
CaiI	CAGNNNCTG	1 cut(s)	272
Csp6I	GTAC	3 cut(s)	208, 224, 317
CviAII	CATG	2 cut(s)	202, 458
CviJI	RGCY	6 cut(s)	86, 140, 251, 265, 374, 416
CviKI_1	RGCY	6 cut(s)	86, 140, 251, 265, 374, 416
CviQI	GTAC	3 cut(s)	208, 224, 317
DdeI	CTNAG	2 cut(s)	301, 410
DpnI	GATC	1 cut(s)	447
DpnII	GATC	1 cut(s)	445
EaeI	YGGCCR	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	270
Eco91I	GGTNACC	1 cut(s)	119
EcoO65I	GGTNACC	1 cut(s)	119
FaeI	CATG	2 cut(s)	205, 461
FaiI	YATR	9 cut(s)	58, 72, 197, 203, 239, 383, 433, 459, 480
FalI	AAGNNNNNCTT	2 cut(s)	358, 390
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	2 cut(s)	201, 457
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	263
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	1 cut(s)	263
GsaI	CCCAGC	1 cut(s)	420
HaeIII	GGCC	1 cut(s)	251
Hin1II	CATG	2 cut(s)	205, 461
HincII	GTYRAC	1 cut(s)	351
HindII	GTYRAC	1 cut(s)	351
HinfI	GANTC	2 cut(s)	297, 329
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	3 cut(s)	274, 289, 304
Hpy8I	GTNNAC	1 cut(s)	351
HpyCH4III	ACNGT	1 cut(s)	321
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	2 cut(s)	185, 262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	433
HpyF3I	CTNAG	2 cut(s)	301, 410
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	205, 461
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	1 cut(s)	445
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	9 cut(s)	102, 119, 126, 143, 159, 229, 240, 279, 402
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	1 cut(s)	21
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	447
MboI	GATC	1 cut(s)	445
MboII	GAAGA	4 cut(s)	37, 157, 276, 369
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	4 cut(s)	21, 149, 310, 342
MluNI	TGGCCA	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	338
MnlI	CCTC	2 cut(s)	349, 482
Mox20I	TGGCCA	1 cut(s)	251
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	433
NdeII	GATC	1 cut(s)	445
NlaIII	CATG	2 cut(s)	205, 461
NmuCI	GTSAC	1 cut(s)	119
NspI	RCATGY	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	297
PflMI	CCANNNNNTGG	1 cut(s)	243
PkrI	GCNGC	1 cut(s)	264
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
PspEI	GGTNACC	1 cut(s)	119
PspFI	CCCAGC	1 cut(s)	416
PstNI	CAGNNNCTG	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	3 cut(s)	209, 225, 318
RsaNI	GTAC	3 cut(s)	208, 224, 317
RseI	CAYNNNNRTG	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	1 cut(s)	445
SchI	GAGTC	1 cut(s)	338
SetI	ASST	8 cut(s)	29, 88, 142, 178, 360, 376, 405, 418
SfaNI	GCATC	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
SpeI	ACTAGT	1 cut(s)	220
Sse9I	AATT	4 cut(s)	21, 149, 310, 342
SspMI	CTAG	1 cut(s)	221
TaaI	ACNGT	1 cut(s)	321
TaiI	ACGT	1 cut(s)	29
TasI	AATT	4 cut(s)	21, 149, 310, 342
TfiI	GAWTC	1 cut(s)	297
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	119
Van91I	CCANNNNNTGG	1 cut(s)	243
XapI	RAATTY	1 cut(s)	149
XceI	RCATGY	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	3 cut(s)	77, 113, 244
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.