Rroxscaffold_5G00350130

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000564
Physical Location & Seq
Forward (+)
23855791 .. 23858699
2909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350130.1

Sequence Viewer

Length: 1962 bp
ATGGATACCAAAACCAGCCCGACTAAGTTCATGCTTTTCCTTCTCTTCTCATACCTACATCTCAAGACTCATGTCTCCCTCACAACCGATGCCATCACCGCAGACCAATCTCTCTCAGGTGACGAAACCATTGTCTCCTCAGGTGGTGTTTTTGAACTCAGTTTCTTCAAACCAGGTAAACTTCCAAACTACTACGTAGGCATGTGGTACTACAAGCGAGTAGTAACTGTGAAAACCATAGTCTGGGTGGCCAATAGAAAACAACCAGTCTCCGATAGATTTACTTCGGTGTTGAGGATCATAGATAGTAATTTAGTCCTCGTTGATGAGACCAAAAGTCTTGTTTGGTCCACAAATGTGACCTCCACCACCACCTCAGGCTCAGCTACTTCTATACAAGCAGTTCTTTTAGACAATGGCAACCTTGTCTTAAGAGTTGGATCCAATTCATCATTACTGCCATTATGGCAAAGTTTTGAACATCCAACTCATACTTGGCTAGCAGGAAGTAAAATTGGATTCAACAATGTTACCAAACAAACCCAAAAACTCACTTTATGGAAGAACACGGAGGATCCTGCACCGGGTCTTTACTCTCTTGAGCTAGACCCGAATGGTAGCAACTCATATATCCTACTGTGGAATAGTTCTAGACATTATGCATTTCTCGGGGCAGATCCAGCAACTGACATGGTCGGAGACTTCCAAGCAGTGGATTTGTTTTGGTCCCAACCAAGAAAACAATGTGAAGTTTATGGTTTGTGCGAGGCATTCAGCACTTGCAATGCCAAGTCTTTGGCCTCATGTAGCTGTTTGAAGGGTTTTGAGCCAAAACTGCTGAGTGATTGGAACTTAAATGATCATGCTGGCGGGTGTTCAAGAATAACCGGTCTTCAGTGTGGAAATGCTACTAGTCTTAATGGGACACAAGACCAGTTTCTAGAAATGACTAGAATGTCATTGTCTGAAAATGATCAATATGCAGAGGTCGGGAGTATTGTGGAATGTGAATCCATCTGCTTAAATCACTGCTCTTGCACTGCTTATTCATATGAAAGTGGTGGATGTTCAATTTGGAATGGAGATCTCTTGCATCTGCAACAGCTTGGAGCAAGTGATACTAATGGAAGAACAATGTACATCAGACTTGCGGCTTCCGAGTTCGAGAATCCTCCTAAAAGTAGTAATAAGGAACTACCACTCATTGGTCTGAAGAGTATATTAGCTGCTACAAACAACTTCTCTGAAGCTAATAAACTTGGAGAGGGAGGATTTGGCCCTGTTTATAAGGGGATTTTTCCTGACAATCAAGAAGTAGCAATAAAACGGCTTTCTACGAAGTCTGGGCAAGGACATCAAGAGTTCATGAATGAGTTAAAGCTTATAGCCAAGCTTCGGCATAGAAATCTTGTTCGACTCTTGGGTTGCTGTAATGAAGAGGAGGAAATGATACTGATTTATGAGTACATGCCCAACCGAAGTTTGGATAAATTCTTATTTGATCCATCTGAACAGACAAAATTGGACTGGGATAGACGTTTTAGGATTATAGAAGGTATTGCTCGTGGAGTACTCTATATCCACAAGCGTGCCAGCACCGTGGGGTGCGTCGTCGGGGAGTCCCTTGACCTGACTTCTTCTTCAAGCGCTATGGACGAGGAGAGCACCGGCCCTCGCCACAAGGTTCTCTCGCCTTCCGGAGAAGGACTTCTTGCCTTACCGGTAAGGGCTTTGGTTGTGGTCTCTTGCATTCACCAAATCGATACTTACTATTGTAGACTAAGCGAGCAATCACCGGGAAGTTGGGAGAAGCACGGGGTTTTGCTAAAGCGTGACTTTAGCTTCGCCGGGTTGCGAGGGCGTTACCCTTGCTTCGCTGGTAGTATCGATGGCGTAGCACTAGCGTCGGCTCTTGGAGAGACTAGGACCGGAAGCACGGTAGCCGTGTTTCAACGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

653

Amino Acids

72.03

Weight (kDa)

6.19

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 79 - 188 1.1e-27 D-mannose binding lectin
S_locus_glycop PF00954 236 - 278 5.7e-11 S-locus glycoprotein domain
PAN_2 PF08276 308 - 364 2.1e-13 PAN-like domain
Pkinase PF00069 415 - 530 2.8e-19 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 417 - 530 1.6e-22 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa Rorug01G0022300 Rorug04G0061600
rosa_samantha Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1287
AasI GACNNNNNNGTC 1 cut(s) 955
AccB7I CCANNNNNTGG 3 cut(s) 243, 712, 1205
AccI GTMKAC 1 cut(s) 1777
AccIII TCCGGA 1 cut(s) 1697
AciI CCGC 3 cut(s) 99, 870, 1151
AclWI GGATC 7 cut(s) 305, 435, 448, 569, 582, 671, 1496
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 1 cut(s) 1490
AcuI CTGAAG 3 cut(s) 878, 1232, 1266
AfaI GTAC 4 cut(s) 209, 1139, 1466, 1572
AfeI AGCGCT 1 cut(s) 1648
AfiI CCNNNNNNNGG 6 cut(s) 243, 584, 712, 1205, 1395, 1483
AflII CTTAAG 1 cut(s) 430
AgeI ACCGGT 2 cut(s) 887, 1720
AgsI TTSAA 9 cut(s) 155, 169, 479, 523, 817, 879, 1071, 1644, 1952
AhdI GACNNNNNGTC 1 cut(s) 336
AhlI ACTAGT 1 cut(s) 911
AjnI CCWGG 1 cut(s) 172
AleI CACNNNNGTG 2 cut(s) 356, 1587
AluBI AGCT 9 cut(s) 386, 604, 810, 1105, 1226, 1250, 1381, 1393, 1842
AluI AGCT 9 cut(s) 386, 604, 810, 1105, 1226, 1250, 1381, 1393, 1842
Alw21I GWGCWC 1 cut(s) 1667
Alw26I GTCTC 7 cut(s) 79, 139, 274, 323, 693, 1747, 1913
AlwI GGATC 7 cut(s) 305, 435, 448, 569, 582, 671, 1496
AlwNI CAGNNNCTG 1 cut(s) 686
Ama87I CYCGRG 1 cut(s) 668
Aor13HI TCCGGA 1 cut(s) 1697
Aor51HI AGCGCT 1 cut(s) 1648
AoxI GGCC 4 cut(s) 249, 798, 1276, 1669
ApeKI GCWGC 1 cut(s) 1226
ApoI RAATTY 1 cut(s) 1490
ArsI GACNNNNNNTTYG 4 cut(s) 117, 149, 1826, 1858
AsiGI ACCGGT 2 cut(s) 887, 1720
Asp700I GAANNNNTTC 1 cut(s) 1707
AspLEI GCGC 1 cut(s) 1649
AspS9I GGNCC 5 cut(s) 348, 726, 1277, 1670, 1926
AsuC2I CCSGG 3 cut(s) 585, 1797, 1849
AsuHPI GGTGA 4 cut(s) 88, 131, 1745, 1785
AsuNHI GCTAGC 1 cut(s) 499
AvaI CYCGRG 1 cut(s) 668
AvaII GGWCC 3 cut(s) 348, 726, 1926
AxyI CCTNAGG 2 cut(s) 139, 376
BalI TGGCCA 1 cut(s) 251
BamHI GGATCC 2 cut(s) 440, 574
BauI CACGAG 1 cut(s) 1563
BbsI GAAGAC 1 cut(s) 884
Bbv12I GWGCWC 1 cut(s) 1667
BbvI GCAGC 1 cut(s) 1213
BccI CCATC 4 cut(s) 101, 1022, 1513, 1883
BceAI ACGGC 2 cut(s) 1343, 1928
BcgI CGANNNNNNTGC 2 cut(s) 1887, 1921
BciT130I CCWGG 1 cut(s) 174
BclI TGATCA 2 cut(s) 859, 973
BcnI CCSGG 3 cut(s) 585, 1797, 1849
BcoDI GTCTC 7 cut(s) 79, 139, 274, 323, 693, 1747, 1913
BcuI ACTAGT 1 cut(s) 911
BfaI CTAG 8 cut(s) 500, 605, 651, 912, 941, 951, 1901, 1923
BfoI RGCGCY 1 cut(s) 1650
BfrI CTTAAG 1 cut(s) 430
BglI GCCNNNNNGGC 1 cut(s) 466
BglII AGATCT 1 cut(s) 1084
BisI GCNGC 2 cut(s) 1152, 1227
BlpI GCTNAGC 1 cut(s) 382
BlsI GCNGC 2 cut(s) 1153, 1228
BmcAI AGTACT 1 cut(s) 1572
Bme1390I CCNGG 4 cut(s) 174, 585, 1797, 1849
Bme18I GGWCC 3 cut(s) 348, 726, 1926
BmeRI GACNNNNNGTC 1 cut(s) 336
BmeT110I CYCGRG 1 cut(s) 668
BmgT120I GGNCC 5 cut(s) 348, 726, 1277, 1670, 1926
BmiI GGNNCC 3 cut(s) 442, 576, 728
BmrFI CCNGG 4 cut(s) 174, 585, 1797, 1849
BmrI ACTGGG 1 cut(s) 1537
BmsI GCATC 2 cut(s) 79, 1102
BmtI GCTAGC 1 cut(s) 503
BmuI ACTGGG 1 cut(s) 1537
BoxI GACNNNNGTC 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 884
Bpu1102I GCTNAGC 1 cut(s) 382
BpuEI CTTGAG 2 cut(s) 47, 620
BpuMI CCSGG 3 cut(s) 585, 1797, 1849
Bsa29I ATCGAT 2 cut(s) 1761, 1887
BsaAI YACGTR 1 cut(s) 196
BsaI GGTCTC 2 cut(s) 323, 1747
BsaJI CCNNGG 1 cut(s) 1599
BsaWI WCCGGW 4 cut(s) 887, 1697, 1720, 1928
Bsc4I CCNNNNNNNGG 6 cut(s) 243, 584, 712, 1205, 1395, 1483
Bse118I RCCGGY 3 cut(s) 887, 1667, 1720
Bse1I ACTGG 3 cut(s) 266, 934, 1532
Bse21I CCTNAGG 2 cut(s) 139, 376
Bse3DI GCAATG 1 cut(s) 790
BseAI TCCGGA 1 cut(s) 1697
BseBI CCWGG 1 cut(s) 174
BseCI ATCGAT 2 cut(s) 1761, 1887
BseDI CCNNGG 1 cut(s) 1599
BseGI GGATG 2 cut(s) 481, 1070
BseLI CCNNNNNNNGG 6 cut(s) 243, 584, 712, 1205, 1395, 1483
BseMI GCAATG 1 cut(s) 790
BseMII CTCAG 6 cut(s) 129, 153, 172, 390, 396, 830
BseNI ACTGG 3 cut(s) 266, 934, 1532
BseRI GAGGAG 3 cut(s) 127, 1454, 1673
BseXI GCAGC 1 cut(s) 1213
BsgI GTGCAG 1 cut(s) 564
BshFI GGCC 4 cut(s) 251, 800, 1278, 1671
BshTI ACCGGT 2 cut(s) 887, 1720
BshVI ATCGAT 2 cut(s) 1761, 1887
BsiHKAI GWGCWC 1 cut(s) 1667
BsiHKCI CYCGRG 1 cut(s) 668
BsiSI CCGG 8 cut(s) 584, 888, 1668, 1698, 1721, 1796, 1848, 1929
BslFI GGGAC 3 cut(s) 712, 937, 1606
BslI CCNNNNNNNGG 6 cut(s) 243, 584, 712, 1205, 1395, 1483
BsmAI GTCTC 7 cut(s) 79, 139, 274, 323, 693, 1747, 1913
BsmFI GGGAC 3 cut(s) 712, 937, 1606
BsmI GAATGC 2 cut(s) 770, 1749
BsnI GGCC 4 cut(s) 251, 800, 1278, 1671
Bso31I GGTCTC 2 cut(s) 323, 1747
BsoBI CYCGRG 1 cut(s) 668
Bsp1286I GDGCHC 1 cut(s) 1667
Bsp13I TCCGGA 1 cut(s) 1697
Bsp1407I TGTACA 1 cut(s) 1137
Bsp143I GATC 8 cut(s) 297, 440, 574, 676, 859, 973, 1084, 1501
Bsp1720I GCTNAGC 1 cut(s) 382
BspACI CCGC 3 cut(s) 99, 870, 1151
BspANI GGCC 4 cut(s) 251, 800, 1278, 1671
BspCNI CTCAG 6 cut(s) 128, 152, 171, 389, 395, 831
BspDI ATCGAT 2 cut(s) 1761, 1887
BspEI TCCGGA 1 cut(s) 1697
BspHI TCATGA 1 cut(s) 1365
BspLI GGNNCC 3 cut(s) 442, 576, 728
BspOI GCTAGC 1 cut(s) 503
BspPI GGATC 7 cut(s) 305, 435, 448, 569, 582, 671, 1496
BspTI CTTAAG 1 cut(s) 430
BspTNI GGTCTC 2 cut(s) 323, 1747
BsrDI GCAATG 1 cut(s) 790
BsrFI RCCGGY 3 cut(s) 887, 1667, 1720
BsrGI TGTACA 1 cut(s) 1137
BsrI ACTGG 3 cut(s) 266, 934, 1532
BssAI RCCGGY 3 cut(s) 887, 1667, 1720
BssECI CCNNGG 1 cut(s) 1599
BssMI GATC 8 cut(s) 297, 440, 574, 676, 859, 973, 1084, 1501
BssSI CACGAG 1 cut(s) 1563
Bst2BI CACGAG 1 cut(s) 1563
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 4 cut(s) 229, 639, 1600, 1939
Bst6I CTCTTC 3 cut(s) 50, 1208, 1431
BstAFI CTTAAG 1 cut(s) 430
BstAUI TGTACA 1 cut(s) 1137
BstBAI YACGTR 1 cut(s) 196
BstC8I GCNNGC 5 cut(s) 501, 868, 1590, 1594, 1787
BstDEI CTNAG 8 cut(s) 24, 115, 139, 158, 376, 382, 839, 1781
BstDSI CCRYGG 1 cut(s) 1599
BstF5I GGATG 2 cut(s) 481, 1070
BstH2I RGCGCY 1 cut(s) 1650
BstHHI GCGC 1 cut(s) 1649
BstKTI GATC 8 cut(s) 300, 443, 577, 679, 862, 976, 1087, 1504
BstMAI GTCTC 7 cut(s) 79, 139, 274, 323, 693, 1747, 1913
BstMBI GATC 8 cut(s) 297, 440, 574, 676, 859, 973, 1084, 1501
BstMWI GCNNNNNNNGC 4 cut(s) 98, 466, 680, 835
BstNI CCWGG 1 cut(s) 174
BstNSI RCATGY 2 cut(s) 205, 1471
BstPAI GACNNNNGTC 1 cut(s) 71
BstSCI CCNGG 4 cut(s) 172, 583, 1795, 1847
BstSNI TACGTA 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 1213
BstV2I GAAGAC 1 cut(s) 884
BstX2I RGATCY 4 cut(s) 440, 574, 676, 1084
BstXI CCANNNNNNTGG 2 cut(s) 796, 1600
BstYI RGATCY 4 cut(s) 440, 574, 676, 1084
Bsu15I ATCGAT 2 cut(s) 1761, 1887
Bsu36I CCTNAGG 2 cut(s) 139, 376
BsuRI GGCC 4 cut(s) 251, 800, 1278, 1671
BsuTUI ATCGAT 2 cut(s) 1761, 1887
BtgI CCRYGG 1 cut(s) 1599
BtsCI GGATG 2 cut(s) 481, 1070
BtsI GCAGTG 3 cut(s) 717, 1027, 1038
BtsIMutI CAGTG 4 cut(s) 717, 902, 1027, 1038
Cac8I GCNNGC 5 cut(s) 501, 868, 1590, 1594, 1787
CaiI CAGNNNCTG 1 cut(s) 686
CciI TCATGA 1 cut(s) 1365
CfoI GCGC 1 cut(s) 1649
Cfr10I RCCGGY 3 cut(s) 887, 1667, 1720
Cfr13I GGNCC 5 cut(s) 348, 726, 1277, 1670, 1926
ClaI ATCGAT 2 cut(s) 1761, 1887
CseI GACGC 2 cut(s) 1597, 1893
CsiI ACCWGGT 1 cut(s) 172
Csp6I GTAC 4 cut(s) 208, 1138, 1465, 1571
CspAI ACCGGT 2 cut(s) 887, 1720
CviAII CATG 8 cut(s) 31, 71, 202, 691, 804, 863, 1366, 1468
CviQI GTAC 4 cut(s) 208, 1138, 1465, 1571
DdeI CTNAG 8 cut(s) 24, 115, 139, 158, 376, 382, 839, 1781
DpnI GATC 8 cut(s) 299, 442, 576, 678, 861, 975, 1086, 1503
DpnII GATC 8 cut(s) 297, 440, 574, 676, 859, 973, 1084, 1501
DrdI GACNNNNNNGTC 1 cut(s) 955
DriI GACNNNNNGTC 1 cut(s) 336
DseDI GACNNNNNNGTC 1 cut(s) 955
EaeI YGGCCR 1 cut(s) 249
Eam1104I CTCTTC 3 cut(s) 50, 1208, 1431
Eam1105I GACNNNNNGTC 1 cut(s) 336
EarI CTCTTC 3 cut(s) 50, 1208, 1431
Eco105I TACGTA 1 cut(s) 196
Eco31I GGTCTC 2 cut(s) 323, 1747
Eco47I GGWCC 3 cut(s) 348, 726, 1926
Eco47III AGCGCT 1 cut(s) 1648
Eco57I CTGAAG 3 cut(s) 878, 1232, 1266
Eco81I CCTNAGG 2 cut(s) 139, 376
Eco88I CYCGRG 1 cut(s) 668
EcoRII CCWGG 1 cut(s) 172
EcoT22I ATGCAT 1 cut(s) 664
FaeI CATG 8 cut(s) 34, 74, 205, 694, 807, 866, 1369, 1471
FalI AAGNNNNNCTT 6 cut(s) 390, 422, 1695, 1727, 1820, 1852
FaqI GGGAC 3 cut(s) 712, 937, 1606
FatI CATG 8 cut(s) 30, 70, 201, 690, 803, 862, 1365, 1467
FauI CCCGC 1 cut(s) 863
FauNDI CATATG 1 cut(s) 1051
FbaI TGATCA 2 cut(s) 859, 973
FblI GTMKAC 1 cut(s) 1777
Fnu4HI GCNGC 2 cut(s) 1152, 1227
FokI GGATG 2 cut(s) 468, 1077
Fsp4HI GCNGC 2 cut(s) 1152, 1227
FspBI CTAG 8 cut(s) 500, 605, 651, 912, 941, 951, 1901, 1923
GlaI GCGC 1 cut(s) 1648
GluI GCNGC 2 cut(s) 1152, 1227
HaeII RGCGCY 1 cut(s) 1650
HaeIII GGCC 4 cut(s) 251, 800, 1278, 1671
HapII CCGG 8 cut(s) 584, 888, 1668, 1698, 1721, 1796, 1848, 1929
HgaI GACGC 2 cut(s) 1597, 1893
HhaI GCGC 1 cut(s) 1649
Hin1II CATG 8 cut(s) 34, 74, 205, 694, 807, 866, 1369, 1471
Hin6I GCGC 1 cut(s) 1647
HinP1I GCGC 1 cut(s) 1647
HindIII AAGCTT 2 cut(s) 1379, 1391
HinfI GANTC 6 cut(s) 67, 519, 1010, 1168, 1416, 1619
HpaII CCGG 8 cut(s) 584, 888, 1668, 1698, 1721, 1796, 1848, 1929
HphI GGTGA 4 cut(s) 88, 131, 1745, 1785
Hpy166II GTNNAC 3 cut(s) 179, 351, 1778
Hpy188I TCNGA 8 cut(s) 274, 698, 967, 1145, 1159, 1212, 1246, 1510
Hpy8I GTNNAC 3 cut(s) 179, 351, 1778
Hpy99I CGWCG 3 cut(s) 1613, 1616, 1909
HpyAV CCTTC 5 cut(s) 50, 811, 1547, 1697, 1704
HpyCH4III ACNGT 4 cut(s) 229, 639, 1600, 1939
HpyCH4IV ACGT 2 cut(s) 195, 1537
HpyCH4V TGCA 8 cut(s) 581, 662, 783, 983, 1038, 1093, 1099, 1749
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 466, 680, 835
HpyF3I CTNAG 8 cut(s) 24, 115, 139, 158, 376, 382, 839, 1781
HpySE526I ACGT 2 cut(s) 195, 1537
Hsp92II CATG 8 cut(s) 34, 74, 205, 694, 807, 866, 1369, 1471
HspAI GCGC 1 cut(s) 1647
Kpn2I TCCGGA 1 cut(s) 1697
Ksp22I TGATCA 2 cut(s) 859, 973
Kzo9I GATC 8 cut(s) 297, 440, 574, 676, 859, 973, 1084, 1501
LmnI GCTCC 1 cut(s) 1109
Lsp1109I GCAGC 1 cut(s) 1213
LweI GCATC 2 cut(s) 79, 1102
MabI ACCWGGT 1 cut(s) 172
MaeI CTAG 8 cut(s) 500, 605, 651, 912, 941, 951, 1901, 1923
MaeII ACGT 2 cut(s) 195, 1537
MaeIII GTNAC 6 cut(s) 119, 223, 358, 529, 1832, 1862
MalI GATC 8 cut(s) 299, 442, 576, 678, 861, 975, 1086, 1503
MboI GATC 8 cut(s) 297, 440, 574, 676, 859, 973, 1084, 1501
MboII GAAGA 9 cut(s) 37, 157, 574, 884, 1140, 1225, 1448, 1629, 1632
MflI RGATCY 4 cut(s) 440, 574, 676, 1084
MhlI GDGCHC 1 cut(s) 1667
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 6 cut(s) 310, 445, 513, 1071, 1490, 1520
MluNI TGGCCA 1 cut(s) 251
MlyI GAGTC 3 cut(s) 61, 1410, 1628
MmeI TCCRAC 3 cut(s) 418, 509, 676
Mox20I TGGCCA 1 cut(s) 251
Mph1103I ATGCAT 1 cut(s) 664
MroI TCCGGA 1 cut(s) 1697
MroXI GAANNNNTTC 1 cut(s) 1707
MscI TGGCCA 1 cut(s) 251
MseI TTAA 5 cut(s) 431, 854, 918, 1022, 1376
MslI CAYNNNNRTG 2 cut(s) 356, 1587
Msp20I TGGCCA 1 cut(s) 251
MspCI CTTAAG 1 cut(s) 430
MspI CCGG 8 cut(s) 584, 888, 1668, 1698, 1721, 1796, 1848, 1929
MspR9I CCNGG 4 cut(s) 174, 585, 1797, 1849
Mva1269I GAATGC 2 cut(s) 770, 1749
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 4 cut(s) 98, 466, 680, 835
NciI CCSGG 3 cut(s) 585, 1797, 1849
NdeI CATATG 1 cut(s) 1051
NdeII GATC 8 cut(s) 297, 440, 574, 676, 859, 973, 1084, 1501
NheI GCTAGC 1 cut(s) 499
NlaIII CATG 8 cut(s) 34, 74, 205, 694, 807, 866, 1369, 1471
NlaIV GGNNCC 3 cut(s) 442, 576, 728
NmuCI GTSAC 3 cut(s) 119, 358, 1832
NsiI ATGCAT 1 cut(s) 664
NspI RCATGY 2 cut(s) 205, 1471
OliI CACNNNNGTG 2 cut(s) 356, 1587
PagI TCATGA 1 cut(s) 1365
PctI GAATGC 2 cut(s) 770, 1749
PdmI GAANNNNTTC 1 cut(s) 1707
PfeI GAWTC 3 cut(s) 519, 1010, 1168
PflFI GACNNNGTC 1 cut(s) 692
PflMI CCANNNNNTGG 3 cut(s) 243, 712, 1205
PinAI ACCGGT 2 cut(s) 887, 1720
PkrI GCNGC 2 cut(s) 1153, 1228
PleI GAGTC 3 cut(s) 61, 1410, 1627
PpsI GAGTC 3 cut(s) 61, 1410, 1627
Ppu21I YACGTR 1 cut(s) 196
PshAI GACNNNNGTC 1 cut(s) 71
PsiI TTATAA 1 cut(s) 1287
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 3 cut(s) 442, 576, 728
PspPI GGNCC 5 cut(s) 348, 726, 1277, 1670, 1926
PstNI CAGNNNCTG 1 cut(s) 686
PsuI RGATCY 4 cut(s) 440, 574, 676, 1084
PsyI GACNNNGTC 1 cut(s) 692
RsaI GTAC 4 cut(s) 209, 1139, 1466, 1572
RsaNI GTAC 4 cut(s) 208, 1138, 1465, 1571
RseI CAYNNNNRTG 2 cut(s) 356, 1587
SaqAI TTAA 5 cut(s) 431, 854, 918, 1022, 1376
SatI GCNGC 2 cut(s) 1152, 1227
Sau3AI GATC 8 cut(s) 297, 440, 574, 676, 859, 973, 1084, 1501
Sau96I GGNCC 5 cut(s) 348, 726, 1277, 1670, 1926
ScaI AGTACT 1 cut(s) 1572
SchI GAGTC 3 cut(s) 61, 1410, 1628
ScrFI CCNGG 4 cut(s) 174, 585, 1797, 1849
SduI GDGCHC 1 cut(s) 1667
SexAI ACCWGGT 1 cut(s) 172
SfaNI GCATC 2 cut(s) 79, 1102
SinI GGWCC 3 cut(s) 348, 726, 1926
SmiMI CAYNNNNRTG 2 cut(s) 356, 1587
SmlI CTYRAG 3 cut(s) 62, 430, 599
SmoI CTYRAG 3 cut(s) 62, 430, 599
SnaBI TACGTA 1 cut(s) 196
SpeI ACTAGT 1 cut(s) 911
Sse9I AATT 6 cut(s) 310, 445, 513, 1071, 1490, 1520
SsiI CCGC 3 cut(s) 99, 870, 1151
SspMI CTAG 8 cut(s) 500, 605, 651, 912, 941, 951, 1901, 1923
StyD4I CCNGG 4 cut(s) 172, 583, 1795, 1847
TaaI ACNGT 4 cut(s) 229, 639, 1600, 1939
TaiI ACGT 2 cut(s) 198, 1540
TaqI TCGA 4 cut(s) 1164, 1414, 1761, 1887
TasI AATT 6 cut(s) 310, 445, 513, 1071, 1490, 1520
TatI WGTACW 3 cut(s) 1137, 1464, 1570
TauI GCSGC 1 cut(s) 1154
TfiI GAWTC 3 cut(s) 519, 1010, 1168
Tru1I TTAA 5 cut(s) 431, 854, 918, 1022, 1376
Tru9I TTAA 5 cut(s) 431, 854, 918, 1022, 1376
TscAI CASTG 4 cut(s) 717, 902, 1034, 1045
TseFI GTSAC 3 cut(s) 119, 358, 1832
TseI GCWGC 1 cut(s) 1226
Tsp45I GTSAC 3 cut(s) 119, 358, 1832
TspDTI ATGAA 7 cut(s) 19, 438, 1038, 1068, 1354, 1382, 1449
TspGWI ACGGA 1 cut(s) 584
TspRI CASTG 4 cut(s) 717, 902, 1034, 1045
Tth111I GACNNNGTC 1 cut(s) 692
Van91I CCANNNNNTGG 3 cut(s) 243, 712, 1205
Vha464I CTTAAG 1 cut(s) 430
VpaK11BI GGWCC 3 cut(s) 348, 726, 1926
XapI RAATTY 1 cut(s) 1490
XbaI TCTAGA 2 cut(s) 650, 940
XceI RCATGY 2 cut(s) 205, 1471
XcmI CCANNNNNNNNNTGG 3 cut(s) 244, 492, 1480
XmiI GTMKAC 1 cut(s) 1777
XmnI GAANNNNTTC 1 cut(s) 1707
XspI CTAG 8 cut(s) 500, 605, 651, 912, 941, 951, 1901, 1923
ZrmI AGTACT 1 cut(s) 1572
Zsp2I ATGCAT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.