Rh4AG133300

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
29008132 .. 29011933
3802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG133300.1

Sequence Viewer

Length: 1203 bp
ATGGCTGACACCATCACTGTAAACCAATCTCTCTCTGGTGATCAGACCATTGTCTCGGAACATGGGGTTTTTGAACTGGGTTTCTTCAAACCAGGTAATAATTCAAATTACTATATAGGCATCTGGTATTACAAGCAAGTTGTGTCTGTGCAAACCATAGTCTGGGTGGCAAATAGGGAACGGTCAATCTCTGATAGATTTTCTTCAGTATTGACGATGTCAGATGGAAATTTAGTACTGTTTAATGAGTCCAAAAGCCCAGTTTGGTCTACAAATCTGTCCTCCACCACCTTAGGCTCTGTGAAAGCAGTTCTCTTAGATGATGGAAACCTTGTCTTAAGAGCTGGGTCCAGTTCATCCCAACCTTTATGGCAAAGCTTTGATCATCCAGCCCATACTTGGCTACCAGGAAGTAAACTAGGATTCAACAATGTTACCAAACAAACCCAAATGCTCACTTCATGGAAGAATGCGGAGAACCCTGCACCGGGTCCGTTCTCTCTTCAGCTAGACCCAAATGGAAGCAACGCACTTATCATATTGTTGAATTACTTGACTATGTCTGAACATTATTGGAGCAGTGGACCTTGGGATGATAGTCTTCATACTTTCAGCTTGAGTCCTGAAATGAGCCTCAATAATATCTTCAATTACAGCCATGTTACAAACGAAAACGGAAGTTATTTCACCTATTCTGTTTATAACCCCATTGAAGTATCTCGATTAGTGATGCACTTCTCGGGGCAGGTTTGGCAACTAACATGGAAGACCAATAAATGGAACTTGGTTTGGTCTAAACCAAATGTTTATGCCTTTTGTGGGCCATTCTCCACTTACAGTCAGGAATTCTTGCGTTTCTGTAATTGTTTGAATGGTTTTGGGCCAAAATCGCAGAGTGAGTGGGATTTGCAGGATTATTCTGGTGGGTGTTCGAGAAACACTACTTTGAATTGTGGGAACGGGACGAAAGAAGACCAGTTTATACAAATACCTAGCAAGCCATTGTCTGCATCTCAACAGCTTCAGCTAGGAAGTATTGAGGATTGTGAATCAATCTGTTTAAGAAAGTGCGATTGCTCTGCTTATGGTTATGGAATTACTACTGGATGTGAAATCTGGACAGGAGATCTCTTGGCAGATGACAAAGGAAGAACTCTACACATCAGAGTACCGGCAGCTGAATCAAAGAATCCTAGTAAGTAA

Protein Analysis

400

Amino Acids

44.64

Weight (kDa)

5.62

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 52 - 156 6e-34 D-mannose binding lectin
S_locus_glycop PF00954 192 - 297 1.2e-17 S-locus glycoprotein domain
PAN_2 PF08276 321 - 378 6.9e-10 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa Rorug01G0022300 Rorug04G0061600
rosa_samantha Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 702
Acc36I ACCTGC 1 cut(s) 736
AccB7I CCANNNNNTGG 2 cut(s) 162, 777
AccI GTMKAC 1 cut(s) 269
AciI CCGC 1 cut(s) 473
AcsI RAATTY 2 cut(s) 229, 845
AcuI CTGAAG 3 cut(s) 189, 488, 1007
AfaI GTAC 2 cut(s) 237, 1170
AfiI CCNNNNNNNGG 6 cut(s) 162, 399, 487, 488, 777, 819
AflII CTTAAG 1 cut(s) 337
AgsI TTSAA 9 cut(s) 74, 88, 105, 427, 547, 649, 713, 871, 949
AjnI CCWGG 2 cut(s) 91, 406
AluBI AGCT 7 cut(s) 344, 378, 508, 615, 1021, 1027, 1178
AluI AGCT 7 cut(s) 344, 378, 508, 615, 1021, 1027, 1178
Alw26I GTCTC 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 739
AoxI GGCC 2 cut(s) 821, 881
ApeKI GCWGC 1 cut(s) 1175
ApoI RAATTY 2 cut(s) 229, 845
AspS9I GGNCC 5 cut(s) 348, 491, 584, 821, 881
AsuC2I CCSGG 1 cut(s) 489
AsuHPI GGTGA 2 cut(s) 50, 679
AvaI CYCGRG 1 cut(s) 739
AvaII GGWCC 3 cut(s) 348, 491, 584
AxyI CCTNAGG 1 cut(s) 292
BbsI GAAGAC 3 cut(s) 593, 773, 978
BbvI GCAGC 1 cut(s) 1187
BccI CCATC 3 cut(s) 20, 218, 317
BcgI CGANNNNNNTGC 2 cut(s) 1061, 1095
BciT130I CCWGG 2 cut(s) 93, 408
BclI TGATCA 2 cut(s) 40, 382
BcnI CCSGG 1 cut(s) 489
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 5 cut(s) 419, 509, 993, 1028, 1194
BfrI CTTAAG 1 cut(s) 337
BfuAI ACCTGC 1 cut(s) 736
BglII AGATCT 1 cut(s) 1126
BisI GCNGC 1 cut(s) 1176
BlsI GCNGC 1 cut(s) 1177
BmcAI AGTACT 1 cut(s) 237
Bme1390I CCNGG 3 cut(s) 93, 408, 489
Bme18I GGWCC 3 cut(s) 348, 491, 584
BmeT110I CYCGRG 1 cut(s) 739
BmgT120I GGNCC 5 cut(s) 348, 491, 584, 821, 881
BmiI GGNNCC 2 cut(s) 349, 492
BmrFI CCNGG 3 cut(s) 93, 408, 489
BmrI ACTGGG 2 cut(s) 86, 254
BmsI GCATC 3 cut(s) 129, 720, 1019
BmuI ACTGGG 2 cut(s) 86, 254
BoxI GACNNNNGTC 1 cut(s) 50
BpiI GAAGAC 3 cut(s) 593, 773, 978
BpuEI CTTGAG 1 cut(s) 637
BpuMI CCSGG 1 cut(s) 489
BsaJI CCNNGG 1 cut(s) 587
Bsc4I CCNNNNNNNGG 6 cut(s) 162, 399, 487, 488, 777, 819
Bse118I RCCGGY 1 cut(s) 1171
Bse1I ACTGG 5 cut(s) 81, 260, 351, 976, 1108
Bse21I CCTNAGG 1 cut(s) 292
BseBI CCWGG 2 cut(s) 93, 408
BseDI CCNNGG 1 cut(s) 587
BseGI GGATG 4 cut(s) 356, 385, 598, 1112
BseLI CCNNNNNNNGG 6 cut(s) 162, 399, 487, 488, 777, 819
BseNI ACTGG 5 cut(s) 81, 260, 351, 976, 1108
BseXI GCAGC 1 cut(s) 1187
BseYI CCCAGC 1 cut(s) 344
BsgI GTGCAG 1 cut(s) 468
BshFI GGCC 2 cut(s) 823, 883
BsiHKCI CYCGRG 1 cut(s) 739
BsiSI CCGG 2 cut(s) 488, 1172
BslFI GGGAC 1 cut(s) 976
BslI CCNNNNNNNGG 6 cut(s) 162, 399, 487, 488, 777, 819
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 976
BsmI GAATGC 1 cut(s) 475
BsnI GGCC 2 cut(s) 823, 883
BsoBI CYCGRG 1 cut(s) 739
Bsp143I GATC 3 cut(s) 40, 382, 1126
BspACI CCGC 1 cut(s) 473
BspANI GGCC 2 cut(s) 823, 883
BspLI GGNNCC 2 cut(s) 349, 492
BspMI ACCTGC 1 cut(s) 736
BspTI CTTAAG 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 1171
BsrI ACTGG 5 cut(s) 81, 260, 351, 976, 1108
BssAI RCCGGY 1 cut(s) 1171
BssECI CCNNGG 1 cut(s) 587
BssMI GATC 3 cut(s) 40, 382, 1126
BssT1I CCWWGG 1 cut(s) 587
Bst2UI CCWGG 2 cut(s) 93, 408
Bst4CI ACNGT 4 cut(s) 19, 183, 240, 839
Bst6I CTCTTC 1 cut(s) 507
BstAFI CTTAAG 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 998
BstDEI CTNAG 2 cut(s) 292, 316
BstF5I GGATG 4 cut(s) 356, 385, 598, 1112
BstKTI GATC 3 cut(s) 43, 385, 1129
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 3 cut(s) 40, 382, 1126
BstMWI GCNNNNNNNGC 2 cut(s) 751, 889
BstNI CCWGG 2 cut(s) 93, 408
BstPAI GACNNNNGTC 1 cut(s) 50
BstSCI CCNGG 3 cut(s) 91, 406, 487
BstV1I GCAGC 1 cut(s) 1187
BstV2I GAAGAC 3 cut(s) 593, 773, 978
BstX2I RGATCY 1 cut(s) 1126
BstYI RGATCY 1 cut(s) 1126
Bsu36I CCTNAGG 1 cut(s) 292
BsuRI GGCC 2 cut(s) 823, 883
BtsCI GGATG 4 cut(s) 356, 385, 598, 1112
BtsI GCAGTG 1 cut(s) 586
BtsIMutI CAGTG 2 cut(s) 15, 586
BveI ACCTGC 1 cut(s) 736
Cac8I GCNNGC 1 cut(s) 998
Cfr10I RCCGGY 1 cut(s) 1171
Cfr13I GGNCC 5 cut(s) 348, 491, 584, 821, 881
CsiI ACCWGGT 1 cut(s) 91
Csp6I GTAC 2 cut(s) 236, 1169
CviAII CATG 4 cut(s) 62, 462, 659, 762
CviQI GTAC 2 cut(s) 236, 1169
DdeI CTNAG 2 cut(s) 292, 316
DpnI GATC 3 cut(s) 42, 384, 1128
DpnII GATC 3 cut(s) 40, 382, 1126
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Eco130I CCWWGG 1 cut(s) 587
Eco47I GGWCC 3 cut(s) 348, 491, 584
Eco57I CTGAAG 3 cut(s) 189, 488, 1007
Eco81I CCTNAGG 1 cut(s) 292
Eco88I CYCGRG 1 cut(s) 739
EcoRI GAATTC 1 cut(s) 845
EcoRII CCWGG 2 cut(s) 91, 406
EcoT14I CCWWGG 1 cut(s) 587
ErhI CCWWGG 1 cut(s) 587
FaeI CATG 4 cut(s) 65, 465, 662, 765
FaqI GGGAC 1 cut(s) 976
FatI CATG 4 cut(s) 61, 461, 658, 761
FbaI TGATCA 2 cut(s) 40, 382
FblI GTMKAC 1 cut(s) 269
Fnu4HI GCNGC 1 cut(s) 1176
FokI GGATG 4 cut(s) 343, 372, 605, 1119
Fsp4HI GCNGC 1 cut(s) 1176
FspBI CTAG 5 cut(s) 419, 509, 993, 1028, 1194
GluI GCNGC 1 cut(s) 1176
GsaI CCCAGC 1 cut(s) 348
HaeIII GGCC 2 cut(s) 823, 883
HapII CCGG 2 cut(s) 488, 1172
Hin1II CATG 4 cut(s) 65, 465, 662, 765
HindIII AAGCTT 1 cut(s) 376
HinfI GANTC 6 cut(s) 248, 423, 619, 1049, 1181, 1189
HpaII CCGG 2 cut(s) 488, 1172
HphI GGTGA 2 cut(s) 50, 679
Hpy166II GTNNAC 4 cut(s) 22, 270, 416, 584
Hpy188I TCNGA 6 cut(s) 45, 58, 193, 223, 565, 1166
Hpy188III TCNNGA 5 cut(s) 623, 720, 842, 933, 1117
Hpy8I GTNNAC 4 cut(s) 22, 270, 416, 584
HpyCH4III ACNGT 4 cut(s) 19, 183, 240, 839
HpyCH4V TGCA 5 cut(s) 151, 485, 733, 910, 1010
HpyF10VI GCNNNNNNNGC 2 cut(s) 751, 889
HpyF3I CTNAG 2 cut(s) 292, 316
Hsp92II CATG 4 cut(s) 65, 465, 662, 765
Ksp22I TGATCA 2 cut(s) 40, 382
Kzo9I GATC 3 cut(s) 40, 382, 1126
LmnI GCTCC 1 cut(s) 576
Lsp1109I GCAGC 1 cut(s) 1187
LweI GCATC 3 cut(s) 129, 720, 1019
MabI ACCWGGT 1 cut(s) 91
MaeI CTAG 5 cut(s) 419, 509, 993, 1028, 1194
MaeIII GTNAC 2 cut(s) 433, 661
MalI GATC 3 cut(s) 42, 384, 1128
MboI GATC 3 cut(s) 40, 382, 1126
MboII GAAGA 9 cut(s) 76, 195, 478, 494, 593, 637, 778, 983, 1161
MflI RGATCY 1 cut(s) 1126
MluCI AATT 9 cut(s) 100, 106, 229, 547, 649, 845, 862, 949, 1095
MlyI GAGTC 2 cut(s) 257, 628
MnlI CCTC 3 cut(s) 292, 644, 1033
MseI TTAA 3 cut(s) 243, 338, 1061
MspA1I CMGCKG 1 cut(s) 1178
MspCI CTTAAG 1 cut(s) 337
MspI CCGG 2 cut(s) 488, 1172
MspR9I CCNGG 3 cut(s) 93, 408, 489
Mva1269I GAATGC 1 cut(s) 475
MvaI CCWGG 2 cut(s) 93, 408
MwoI GCNNNNNNNGC 2 cut(s) 751, 889
NciI CCSGG 1 cut(s) 489
NdeII GATC 3 cut(s) 40, 382, 1126
NlaIII CATG 4 cut(s) 65, 465, 662, 765
NlaIV GGNNCC 2 cut(s) 349, 492
PctI GAATGC 1 cut(s) 475
PfeI GAWTC 4 cut(s) 423, 1049, 1181, 1189
PflFI GACNNNGTC 2 cut(s) 217, 559
PflMI CCANNNNNTGG 2 cut(s) 162, 777
PkrI GCNGC 1 cut(s) 1177
PleI GAGTC 2 cut(s) 256, 627
PpsI GAGTC 2 cut(s) 256, 627
PshAI GACNNNNGTC 1 cut(s) 50
PsiI TTATAA 1 cut(s) 702
Psp6I CCWGG 2 cut(s) 91, 406
PspFI CCCAGC 1 cut(s) 344
PspGI CCWGG 2 cut(s) 91, 406
PspN4I GGNNCC 2 cut(s) 349, 492
PspPI GGNCC 5 cut(s) 348, 491, 584, 821, 881
PsuI RGATCY 1 cut(s) 1126
PsyI GACNNNGTC 2 cut(s) 217, 559
PvuII CAGCTG 1 cut(s) 1178
RsaI GTAC 2 cut(s) 237, 1170
RsaNI GTAC 2 cut(s) 236, 1169
SaqAI TTAA 3 cut(s) 243, 338, 1061
SatI GCNGC 1 cut(s) 1176
Sau3AI GATC 3 cut(s) 40, 382, 1126
Sau96I GGNCC 5 cut(s) 348, 491, 584, 821, 881
ScaI AGTACT 1 cut(s) 237
SchI GAGTC 2 cut(s) 257, 628
ScrFI CCNGG 3 cut(s) 93, 408, 489
SexAI ACCWGGT 1 cut(s) 91
SfaNI GCATC 3 cut(s) 129, 720, 1019
SinI GGWCC 3 cut(s) 348, 491, 584
SmlI CTYRAG 2 cut(s) 337, 616
SmoI CTYRAG 2 cut(s) 337, 616
Sse9I AATT 9 cut(s) 100, 106, 229, 547, 649, 845, 862, 949, 1095
SsiI CCGC 1 cut(s) 473
SspMI CTAG 5 cut(s) 419, 509, 993, 1028, 1194
StyD4I CCNGG 3 cut(s) 91, 406, 487
StyI CCWWGG 1 cut(s) 587
TaaI ACNGT 4 cut(s) 19, 183, 240, 839
TaqI TCGA 2 cut(s) 721, 932
TasI AATT 9 cut(s) 100, 106, 229, 547, 649, 845, 862, 949, 1095
TatI WGTACW 1 cut(s) 235
TfiI GAWTC 4 cut(s) 423, 1049, 1181, 1189
Tru1I TTAA 3 cut(s) 243, 338, 1061
Tru9I TTAA 3 cut(s) 243, 338, 1061
TscAI CASTG 2 cut(s) 22, 586
TseI GCWGC 1 cut(s) 1175
TspDTI ATGAA 3 cut(s) 345, 450, 593
TspGWI ACGGA 2 cut(s) 483, 690
TspRI CASTG 2 cut(s) 22, 586
Tth111I GACNNNGTC 2 cut(s) 217, 559
Van91I CCANNNNNTGG 2 cut(s) 162, 777
Vha464I CTTAAG 1 cut(s) 337
VpaK11BI GGWCC 3 cut(s) 348, 491, 584
XapI RAATTY 2 cut(s) 229, 845
XcmI CCANNNNNNNNNTGG 3 cut(s) 32, 163, 396
XmiI GTMKAC 1 cut(s) 269
XspI CTAG 5 cut(s) 419, 509, 993, 1028, 1194
ZrmI AGTACT 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.