Rorug01G0022300

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000564
Physical Location & Seq
Reverse (-)
3772957 .. 3773415
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0022300.1

Sequence Viewer

Length: 459 bp
ATGCTCGTCCGGTGGCTTCCCTGGCGTTTAGGCTGGCCTCCAGCCGCGCTAACGCCTTGGAGGCTGCTACCGGACGGGTTCTCGAAGTATATTGTTCGAGGGGCTTATTGGGTGGTTGTTGGTACTCGGGGTAACCGGATGACTTTGGCATCGGTTTTTGGGGCAGCATCTCTAAGCGGCGGTCGTGCGGACCAGGACTGGCTAACCTTGGTGATAGTGGCTTGGATCAACGGCGGCGTGGATTCTGAATCGACTGCAGTGAGGATTGTGGGGCGCTGGATCGAGGTTGTAATGTTTTTGTGGCAGTGTAGAGCGCAAAGTTTTGGGTCGTGGCGTGGCGGTGGCACGTGGCTGCACGGGCTAGGCGGACCGGGTCGGGCGAAACTGCTGAGGCTGGTACGAACGACATGGCGTGTGGGGGATGTGGGCCTGGACCGAGCCAAGCTTGATGGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

152

Amino Acids

16.86

Weight (kDa)

11.4

Isoelectric Point (pI)

25.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa Rorug01G0022300 Rorug04G0061600
rosa_samantha Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 47
AciI CCGC 7 cut(s) 45, 177, 180, 188, 234, 339, 366
AclWI GGATC 2 cut(s) 233, 287
AcvI CACGTG 1 cut(s) 348
AfaI GTAC 2 cut(s) 124, 399
AjnI CCWGG 3 cut(s) 20, 192, 429
AluBI AGCT 1 cut(s) 445
AluI AGCT 1 cut(s) 445
AlwI GGATC 2 cut(s) 233, 287
Ama87I CYCGRG 1 cut(s) 126
AoxI GGCC 2 cut(s) 35, 427
ApeKI GCWGC 3 cut(s) 64, 164, 352
AspLEI GCGC 3 cut(s) 49, 276, 316
AspS9I GGNCC 4 cut(s) 190, 368, 427, 433
AsuC2I CCSGG 1 cut(s) 372
AsuHPI GGTGA 1 cut(s) 223
AvaI CYCGRG 1 cut(s) 126
AvaII GGWCC 3 cut(s) 190, 368, 433
BanII GRGCYC 1 cut(s) 456
BbrPI CACGTG 1 cut(s) 348
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 3 cut(s) 51, 176, 339
BccI CCATC 1 cut(s) 443
BceAI ACGGC 1 cut(s) 247
BciT130I CCWGG 3 cut(s) 22, 194, 431
BcnI CCSGG 1 cut(s) 372
BfaI CTAG 1 cut(s) 362
BfmI CTRYAG 1 cut(s) 255
BfoI RGCGCY 1 cut(s) 277
BglI GCCNNNNNGGC 1 cut(s) 61
BisI GCNGC 6 cut(s) 45, 65, 165, 178, 235, 353
BlsI GCNGC 6 cut(s) 46, 66, 166, 179, 236, 354
Bme1390I CCNGG 4 cut(s) 22, 194, 372, 431
Bme18I GGWCC 3 cut(s) 190, 368, 433
BmeT110I CYCGRG 1 cut(s) 126
BmgT120I GGNCC 4 cut(s) 190, 368, 427, 433
BmrFI CCNGG 4 cut(s) 22, 194, 372, 431
BmsI GCATC 2 cut(s) 158, 176
BpmI CTGGAG 1 cut(s) 24
Bpu10I CCTNAGC 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 372
BsaAI YACGTR 1 cut(s) 348
BsaJI CCNNGG 3 cut(s) 20, 56, 207
BsaWI WCCGGW 3 cut(s) 9, 70, 135
Bse1I ACTGG 1 cut(s) 203
BseBI CCWGG 3 cut(s) 22, 194, 431
BseDI CCNNGG 3 cut(s) 20, 56, 207
BseGI GGATG 2 cut(s) 144, 427
BseMII CTCAG 1 cut(s) 380
BseNI ACTGG 1 cut(s) 203
BseXI GCAGC 3 cut(s) 51, 176, 339
BsgI GTGCAG 1 cut(s) 338
Bsh1236I CGCG 1 cut(s) 47
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 2 cut(s) 37, 429
BsiEI CGRYCG 1 cut(s) 184
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 4 cut(s) 10, 71, 136, 371
BsnI GGCC 2 cut(s) 37, 429
BsoBI CYCGRG 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 456
Bsp143I GATC 2 cut(s) 225, 279
BspACI CCGC 7 cut(s) 45, 177, 180, 188, 234, 339, 366
BspANI GGCC 2 cut(s) 37, 429
BspCNI CTCAG 1 cut(s) 381
BspFNI CGCG 1 cut(s) 47
BspMAI CTGCAG 1 cut(s) 259
BspPI GGATC 2 cut(s) 233, 287
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 3 cut(s) 20, 56, 207
BssMI GATC 2 cut(s) 225, 279
BssT1I CCWWGG 2 cut(s) 56, 207
Bst2UI CCWGG 3 cut(s) 22, 194, 431
BstBAI YACGTR 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 35
BstDEI CTNAG 2 cut(s) 173, 389
BstEII GGTNACC 1 cut(s) 131
BstF5I GGATG 2 cut(s) 144, 427
BstFNI CGCG 1 cut(s) 47
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 3 cut(s) 49, 276, 316
BstKTI GATC 2 cut(s) 228, 282
BstMBI GATC 2 cut(s) 225, 279
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 4 cut(s) 22, 61, 358, 451
BstNI CCWGG 3 cut(s) 22, 194, 431
BstPI GGTNACC 1 cut(s) 131
BstSCI CCNGG 4 cut(s) 20, 192, 370, 429
BstSFI CTRYAG 1 cut(s) 255
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 3 cut(s) 51, 176, 339
BsuRI GGCC 2 cut(s) 37, 429
BtsCI GGATG 2 cut(s) 144, 427
BtsI GCAGTG 2 cut(s) 264, 311
BtsIMutI CAGTG 2 cut(s) 264, 311
Cac8I GCNNGC 1 cut(s) 35
CfoI GCGC 3 cut(s) 49, 276, 316
Cfr13I GGNCC 4 cut(s) 190, 368, 427, 433
CpoI CGGWCCG 1 cut(s) 368
Csp6I GTAC 2 cut(s) 123, 398
CspI CGGWCCG 1 cut(s) 368
CviAII CATG 1 cut(s) 408
CviQI GTAC 2 cut(s) 123, 398
DdeI CTNAG 2 cut(s) 173, 389
DpnI GATC 2 cut(s) 227, 281
DpnII GATC 2 cut(s) 225, 279
EciI GGCGGA 1 cut(s) 381
Eco130I CCWWGG 2 cut(s) 56, 207
Eco24I GRGCYC 1 cut(s) 456
Eco47I GGWCC 3 cut(s) 190, 368, 433
Eco72I CACGTG 1 cut(s) 348
Eco88I CYCGRG 1 cut(s) 126
Eco91I GGTNACC 1 cut(s) 131
EcoO65I GGTNACC 1 cut(s) 131
EcoRII CCWGG 3 cut(s) 20, 192, 429
EcoT14I CCWWGG 2 cut(s) 56, 207
EcoT38I GRGCYC 1 cut(s) 456
ErhI CCWWGG 2 cut(s) 56, 207
FaeI CATG 1 cut(s) 411
FaiI YATR 2 cut(s) 90, 409
FatI CATG 1 cut(s) 407
Fnu4HI GCNGC 6 cut(s) 45, 65, 165, 178, 235, 353
FokI GGATG 2 cut(s) 151, 434
FriOI GRGCYC 1 cut(s) 456
Fsp4HI GCNGC 6 cut(s) 45, 65, 165, 178, 235, 353
FspBI CTAG 1 cut(s) 362
GlaI GCGC 3 cut(s) 48, 275, 315
GluI GCNGC 6 cut(s) 45, 65, 165, 178, 235, 353
GsuI CTGGAG 1 cut(s) 24
HaeII RGCGCY 1 cut(s) 277
HaeIII GGCC 2 cut(s) 37, 429
HapII CCGG 4 cut(s) 10, 71, 136, 371
HhaI GCGC 3 cut(s) 49, 276, 316
Hin1II CATG 1 cut(s) 411
Hin6I GCGC 3 cut(s) 47, 274, 314
HinP1I GCGC 3 cut(s) 47, 274, 314
HindIII AAGCTT 1 cut(s) 443
HinfI GANTC 2 cut(s) 242, 248
HpaII CCGG 4 cut(s) 10, 71, 136, 371
HphI GGTGA 1 cut(s) 223
Hpy188I TCNGA 2 cut(s) 247, 458
Hpy188III TCNNGA 1 cut(s) 82
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 2 cut(s) 257, 355
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 61, 358, 451
HpyF3I CTNAG 2 cut(s) 173, 389
HpySE526I ACGT 1 cut(s) 347
Hsp92II CATG 1 cut(s) 411
HspAI GCGC 3 cut(s) 47, 274, 314
Kzo9I GATC 2 cut(s) 225, 279
Lsp1109I GCAGC 3 cut(s) 51, 176, 339
LweI GCATC 2 cut(s) 158, 176
MaeI CTAG 1 cut(s) 362
MaeII ACGT 1 cut(s) 347
MaeIII GTNAC 1 cut(s) 131
MalI GATC 2 cut(s) 227, 281
MboI GATC 2 cut(s) 225, 279
MhlI GDGCHC 1 cut(s) 456
MnlI CCTC 6 cut(s) 48, 54, 92, 255, 277, 384
MspI CCGG 4 cut(s) 10, 71, 136, 371
MspR9I CCNGG 4 cut(s) 22, 194, 372, 431
MvaI CCWGG 3 cut(s) 22, 194, 431
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 4 cut(s) 22, 61, 358, 451
NciI CCSGG 1 cut(s) 372
NdeII GATC 2 cut(s) 225, 279
NlaIII CATG 1 cut(s) 411
PfeI GAWTC 2 cut(s) 242, 248
PflFI GACNNNGTC 1 cut(s) 372
PkrI GCNGC 6 cut(s) 46, 66, 166, 179, 236, 354
PmaCI CACGTG 1 cut(s) 348
PmlI CACGTG 1 cut(s) 348
Ppu21I YACGTR 1 cut(s) 348
Psp6I CCWGG 3 cut(s) 20, 192, 429
PspCI CACGTG 1 cut(s) 348
PspEI GGTNACC 1 cut(s) 131
PspGI CCWGG 3 cut(s) 20, 192, 429
PspPI GGNCC 4 cut(s) 190, 368, 427, 433
PstI CTGCAG 1 cut(s) 259
PsyI GACNNNGTC 1 cut(s) 372
RsaI GTAC 2 cut(s) 124, 399
RsaNI GTAC 2 cut(s) 123, 398
Rsr2I CGGWCCG 1 cut(s) 368
RsrII CGGWCCG 1 cut(s) 368
SatI GCNGC 6 cut(s) 45, 65, 165, 178, 235, 353
Sau3AI GATC 2 cut(s) 225, 279
Sau96I GGNCC 4 cut(s) 190, 368, 427, 433
ScrFI CCNGG 4 cut(s) 22, 194, 372, 431
SduI GDGCHC 1 cut(s) 456
SetI ASST 4 cut(s) 209, 288, 350, 447
SfaNI GCATC 2 cut(s) 158, 176
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 3 cut(s) 190, 368, 433
SsiI CCGC 7 cut(s) 45, 177, 180, 188, 234, 339, 366
SspMI CTAG 1 cut(s) 362
StyD4I CCNGG 4 cut(s) 20, 192, 370, 429
StyI CCWWGG 2 cut(s) 56, 207
TaiI ACGT 1 cut(s) 350
TaqI TCGA 4 cut(s) 83, 97, 251, 282
TaqII GACCGA 1 cut(s) 450
TauI GCSGC 3 cut(s) 47, 180, 237
TfiI GAWTC 2 cut(s) 242, 248
TscAI CASTG 2 cut(s) 264, 311
TseI GCWGC 3 cut(s) 64, 164, 352
TspRI CASTG 2 cut(s) 264, 311
Tth111I GACNNNGTC 1 cut(s) 372
VpaK11BI GGWCC 3 cut(s) 190, 368, 433
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.