Rh4CG141000

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
27993647 .. 27994399
753 bp
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UTR
Exon/CDS
Intron
Rh4CG141000.1

Sequence Viewer

Length: 753 bp
ATGCTCACTTCATGGAAGAATGCGGAGAACCCTGCACCGGGTCCGTTCTCTCTTCAGCTAGACCCAAATGGAAGCAACGCACTTATCATATTGTTGAATTACTTGACTATGTCTGAACATTATTGGAGCAGTGGACCTTGGGATGATAGTCTTCATACTTTCAGCTTGAGTCCTGAAATGAGCCTCAATAATATCTTCAATTACAGCCATGTTACAAACGAAAACGGAAGTTATTTCACCTATTCTGTTTTTAACCCCATTGAAGTATCTCGATTAGTGATGCACTTCTCGGGGCAGGTTTGGCAACTAACATGGAAGACCAATAAATGGAACTTGGTTTGGTCTAAACCAAATGTTTATGCCTTTTGTGGGCCATTCTCCACTTACAGTCAGGAATTCTTGCGTTTCTGTAATTGTTTGAATGGTTTTGGGCCAAAATCGCAGAGTGAGTGGGATTTGCAGGATTATTCTGGTGGGTGTTCGAGAAACACTACTTTGAATTGTGGGAACGGGACGAAAGAAGACCAGTTTATACAAATACCTAGCAAGCCATTGTCTGCATCTCAACAGCTTCAGCTAGGAAGTATTGAGGATTGTGAATCAATCTGTTTAAGAAAGTGCGATTGCTCTGCTTATGGTTATGGAATTACTACTGGATGTGAAATCTGGACAGGAGATCTCTTGGCAGATGACAAAGGAAGAACTCTACACATCAGAGTACCGGCAGCTGAATCAAAGAATCCTAGTAAGTAA

Protein Analysis

250

Amino Acids

28.1

Weight (kDa)

5.33

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 42 - 147 8.3e-18 S-locus glycoprotein domain
PAN_2 PF08276 171 - 228 3.2e-10 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa Rorug01G0022300 Rorug04G0061600
rosa_samantha Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 286
AccB7I CCANNNNNTGG 1 cut(s) 327
AciI CCGC 1 cut(s) 23
AcsI RAATTY 1 cut(s) 395
AcuI CTGAAG 2 cut(s) 38, 557
AfaI GTAC 1 cut(s) 720
AfiI CCNNNNNNNGG 4 cut(s) 37, 38, 327, 369
AgsI TTSAA 5 cut(s) 97, 199, 263, 421, 499
AluBI AGCT 5 cut(s) 58, 165, 571, 577, 728
AluI AGCT 5 cut(s) 58, 165, 571, 577, 728
Ama87I CYCGRG 1 cut(s) 289
AoxI GGCC 2 cut(s) 371, 431
ApeKI GCWGC 1 cut(s) 725
ApoI RAATTY 1 cut(s) 395
AspS9I GGNCC 4 cut(s) 41, 134, 371, 431
AsuC2I CCSGG 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 229
AvaI CYCGRG 1 cut(s) 289
AvaII GGWCC 2 cut(s) 41, 134
BbsI GAAGAC 3 cut(s) 143, 323, 528
BbvI GCAGC 1 cut(s) 737
BcgI CGANNNNNNTGC 2 cut(s) 611, 645
BcnI CCSGG 1 cut(s) 39
BfaI CTAG 4 cut(s) 59, 543, 578, 744
BfuAI ACCTGC 1 cut(s) 286
BglII AGATCT 1 cut(s) 676
BisI GCNGC 1 cut(s) 726
BlsI GCNGC 1 cut(s) 727
Bme1390I CCNGG 1 cut(s) 39
Bme18I GGWCC 2 cut(s) 41, 134
BmeT110I CYCGRG 1 cut(s) 289
BmgT120I GGNCC 4 cut(s) 41, 134, 371, 431
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 39
BmsI GCATC 2 cut(s) 270, 569
BpiI GAAGAC 3 cut(s) 143, 323, 528
BpuEI CTTGAG 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 137
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 38, 327, 369
Bse118I RCCGGY 1 cut(s) 721
Bse1I ACTGG 2 cut(s) 526, 658
BseDI CCNNGG 1 cut(s) 137
BseGI GGATG 2 cut(s) 148, 662
BseLI CCNNNNNNNGG 4 cut(s) 37, 38, 327, 369
BseNI ACTGG 2 cut(s) 526, 658
BseXI GCAGC 1 cut(s) 737
BsgI GTGCAG 1 cut(s) 18
BshFI GGCC 2 cut(s) 373, 433
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 2 cut(s) 38, 722
BslFI GGGAC 1 cut(s) 526
BslI CCNNNNNNNGG 4 cut(s) 37, 38, 327, 369
BsmFI GGGAC 1 cut(s) 526
BsmI GAATGC 1 cut(s) 25
BsnI GGCC 2 cut(s) 373, 433
BsoBI CYCGRG 1 cut(s) 289
Bsp143I GATC 1 cut(s) 676
BspACI CCGC 1 cut(s) 23
BspANI GGCC 2 cut(s) 373, 433
BspLI GGNNCC 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 721
BsrI ACTGG 2 cut(s) 526, 658
BssAI RCCGGY 1 cut(s) 721
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 1 cut(s) 676
BssT1I CCWWGG 1 cut(s) 137
Bst4CI ACNGT 1 cut(s) 389
Bst6I CTCTTC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 548
BstF5I GGATG 2 cut(s) 148, 662
BstKTI GATC 1 cut(s) 679
BstMBI GATC 1 cut(s) 676
BstMWI GCNNNNNNNGC 2 cut(s) 301, 439
BstSCI CCNGG 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 737
BstV2I GAAGAC 3 cut(s) 143, 323, 528
BstX2I RGATCY 1 cut(s) 676
BstYI RGATCY 1 cut(s) 676
BsuRI GGCC 2 cut(s) 373, 433
BtsCI GGATG 2 cut(s) 148, 662
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 136
BveI ACCTGC 1 cut(s) 286
Cac8I GCNNGC 1 cut(s) 548
Cfr10I RCCGGY 1 cut(s) 721
Cfr13I GGNCC 4 cut(s) 41, 134, 371, 431
Csp6I GTAC 1 cut(s) 719
CviAII CATG 3 cut(s) 12, 209, 312
CviQI GTAC 1 cut(s) 719
DpnI GATC 1 cut(s) 678
DpnII GATC 1 cut(s) 676
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 137
Eco47I GGWCC 2 cut(s) 41, 134
Eco57I CTGAAG 2 cut(s) 38, 557
Eco88I CYCGRG 1 cut(s) 289
EcoRI GAATTC 1 cut(s) 395
EcoT14I CCWWGG 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 137
FaeI CATG 3 cut(s) 15, 212, 315
FaqI GGGAC 1 cut(s) 526
FatI CATG 3 cut(s) 11, 208, 311
Fnu4HI GCNGC 1 cut(s) 726
FokI GGATG 2 cut(s) 155, 669
Fsp4HI GCNGC 1 cut(s) 726
FspBI CTAG 4 cut(s) 59, 543, 578, 744
GluI GCNGC 1 cut(s) 726
HaeIII GGCC 2 cut(s) 373, 433
HapII CCGG 2 cut(s) 38, 722
Hin1II CATG 3 cut(s) 15, 212, 315
HinfI GANTC 4 cut(s) 169, 599, 731, 739
HpaII CCGG 2 cut(s) 38, 722
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 134
Hpy188I TCNGA 2 cut(s) 115, 716
Hpy188III TCNNGA 5 cut(s) 173, 270, 392, 483, 667
Hpy8I GTNNAC 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4V TGCA 4 cut(s) 35, 283, 460, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 301, 439
Hsp92II CATG 3 cut(s) 15, 212, 315
Kzo9I GATC 1 cut(s) 676
LmnI GCTCC 1 cut(s) 126
Lsp1109I GCAGC 1 cut(s) 737
LweI GCATC 2 cut(s) 270, 569
MaeI CTAG 4 cut(s) 59, 543, 578, 744
MaeIII GTNAC 1 cut(s) 211
MalI GATC 1 cut(s) 678
MboI GATC 1 cut(s) 676
MboII GAAGA 7 cut(s) 28, 44, 143, 187, 328, 533, 711
MflI RGATCY 1 cut(s) 676
MluCI AATT 6 cut(s) 97, 199, 395, 412, 499, 645
MlyI GAGTC 1 cut(s) 178
MnlI CCTC 2 cut(s) 194, 583
MseI TTAA 2 cut(s) 252, 611
MspA1I CMGCKG 1 cut(s) 728
MspI CCGG 2 cut(s) 38, 722
MspR9I CCNGG 1 cut(s) 39
Mva1269I GAATGC 1 cut(s) 25
MwoI GCNNNNNNNGC 2 cut(s) 301, 439
NciI CCSGG 1 cut(s) 39
NdeII GATC 1 cut(s) 676
NlaIII CATG 3 cut(s) 15, 212, 315
NlaIV GGNNCC 1 cut(s) 42
PctI GAATGC 1 cut(s) 25
PfeI GAWTC 3 cut(s) 599, 731, 739
PflFI GACNNNGTC 1 cut(s) 109
PflMI CCANNNNNTGG 1 cut(s) 327
PkrI GCNGC 1 cut(s) 727
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 4 cut(s) 41, 134, 371, 431
PsuI RGATCY 1 cut(s) 676
PsyI GACNNNGTC 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 728
RsaI GTAC 1 cut(s) 720
RsaNI GTAC 1 cut(s) 719
SaqAI TTAA 2 cut(s) 252, 611
SatI GCNGC 1 cut(s) 726
Sau3AI GATC 1 cut(s) 676
Sau96I GGNCC 4 cut(s) 41, 134, 371, 431
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 1 cut(s) 39
SetI ASST 9 cut(s) 60, 139, 167, 242, 300, 544, 573, 579, 730
SfaNI GCATC 2 cut(s) 270, 569
SinI GGWCC 2 cut(s) 41, 134
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 6 cut(s) 97, 199, 395, 412, 499, 645
SsiI CCGC 1 cut(s) 23
SspMI CTAG 4 cut(s) 59, 543, 578, 744
StyD4I CCNGG 1 cut(s) 37
StyI CCWWGG 1 cut(s) 137
TaaI ACNGT 1 cut(s) 389
TaqI TCGA 2 cut(s) 271, 482
TasI AATT 6 cut(s) 97, 199, 395, 412, 499, 645
TfiI GAWTC 3 cut(s) 599, 731, 739
Tru1I TTAA 2 cut(s) 252, 611
Tru9I TTAA 2 cut(s) 252, 611
TscAI CASTG 1 cut(s) 136
TseI GCWGC 1 cut(s) 725
TspDTI ATGAA 1 cut(s) 143
TspGWI ACGGA 2 cut(s) 33, 240
TspRI CASTG 1 cut(s) 136
Tth111I GACNNNGTC 1 cut(s) 109
Van91I CCANNNNNTGG 1 cut(s) 327
VpaK11BI GGWCC 2 cut(s) 41, 134
XapI RAATTY 1 cut(s) 395
XspI CTAG 4 cut(s) 59, 543, 578, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.