Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000564

Physical Location & Seq

Genomic Coordinates Forward (+)

6336828 .. 6337121

Gene Structure 294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54902

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGTGGTACTACAAGAAACTAGTACCGGACCAAACCATAGTCTGGGTGGCCAATAGGGTGCAGCCAGTCTCTGATAGATTTTCTTCAGAGTTGAGAATCTCAGATGGTAATTTGGTACTGTTTAATGAGTCCAAAACCCCAATTTGGTCAACAGAGGTCAGTTCAAGTTCAGCTTCTTCTATACATGTAGTTCTTTTAGATAATGGAAACCTTGTGCTAAGAGCTGGGTCTTTGCCTTTATGGCAAAGTTTTGATCAACCAACCCATGCTTTTCTACTCCTCAAATATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

97

Amino Acids

11.04

Weight (kDa)

8.08

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	12 - 92	1.2e-24	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000564)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica	MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica	Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis	pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis	RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata	RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora	Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii	Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa	Rorug01G0022300 Rorug04G0061600
rosa_samantha	Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana	Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	42
AcoI	YGGCCR	1 cut(s)	48
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	3 cut(s)	8, 24, 117
AfiI	CCNNNNNNNGG	2 cut(s)	42, 144
AflIII	ACRYGT	1 cut(s)	184
AgsI	TTSAA	1 cut(s)	165
AhlI	ACTAGT	1 cut(s)	19
AluBI	AGCT	2 cut(s)	173, 224
AluI	AGCT	2 cut(s)	173, 224
Alw26I	GTCTC	1 cut(s)	73
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	28
BalI	TGGCCA	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	98
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	73
BcuI	ACTAGT	1 cut(s)	19
BfaI	CTAG	1 cut(s)	20
BglI	GCCNNNNNGGC	1 cut(s)	241
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 144
Bse1I	ACTGG	1 cut(s)	65
BseLI	CCNNNNNNNGG	2 cut(s)	42, 144
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	73
BseYI	CCCAGC	1 cut(s)	224
BsgI	GTGCAG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	42, 144
BsmAI	GTCTC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	253
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	65
BssMI	GATC	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	120
BstDEI	CTNAG	2 cut(s)	100, 218
BstKTI	GATC	1 cut(s)	256
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNSI	RCATGY	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	50
CaiI	CAGNNNCTG	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	28
Csp6I	GTAC	3 cut(s)	7, 23, 116
CviAII	CATG	2 cut(s)	185, 266
CviJI	RGCY	4 cut(s)	50, 64, 173, 224
CviKI_1	RGCY	4 cut(s)	50, 64, 173, 224
CviQI	GTAC	3 cut(s)	7, 23, 116
DdeI	CTNAG	2 cut(s)	100, 218
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	69
FaeI	CATG	2 cut(s)	188, 269
FaiI	YATR	6 cut(s)	38, 182, 186, 241, 267, 288
FalI	AAGNNNNNCTT	2 cut(s)	157, 189
FatI	CATG	2 cut(s)	184, 265
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	62
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	1 cut(s)	62
GsaI	CCCAGC	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	2 cut(s)	188, 269
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HinfI	GANTC	2 cut(s)	96, 128
HpaII	CCGG	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	3 cut(s)	73, 88, 103
Hpy8I	GTNNAC	1 cut(s)	150
HpyCH4III	ACNGT	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	61
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	2 cut(s)	100, 218
Hsp92II	CATG	2 cut(s)	188, 269
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	253
LpnPI	CCDG	4 cut(s)	28, 39, 78, 210
Lsp1109I	GCAGC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	20
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	2 cut(s)	75, 168
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	2 cut(s)	109, 141
MluNI	TGGCCA	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	2 cut(s)	148, 290
Mox20I	TGGCCA	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	1 cut(s)	123
Msp20I	TGGCCA	1 cut(s)	50
MspI	CCGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	2 cut(s)	188, 269
NspI	RCATGY	1 cut(s)	188
PciI	ACATGT	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	96
PflMI	CCANNNNNTGG	1 cut(s)	42
PkrI	GCNGC	1 cut(s)	63
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PscI	ACATGT	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	71
RsaI	GTAC	3 cut(s)	8, 24, 117
RsaNI	GTAC	3 cut(s)	7, 23, 116
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	1 cut(s)	62
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	1 cut(s)	137
SetI	ASST	4 cut(s)	159, 175, 213, 226
SinI	GGWCC	1 cut(s)	28
SpeI	ACTAGT	1 cut(s)	19
Sse9I	AATT	2 cut(s)	109, 141
SspMI	CTAG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	120
TasI	AATT	2 cut(s)	109, 141
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseI	GCWGC	1 cut(s)	61
Van91I	CCANNNNNTGG	1 cut(s)	42
VpaK11BI	GGWCC	1 cut(s)	28
XceI	RCATGY	1 cut(s)	188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.