Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000564

Physical Location & Seq

Genomic Coordinates Forward (+)

6938495 .. 6939253

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1083900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGTACTCAAAGCAAGTCATGAGAGGACTGTTGTTTGGGAAGCAAATAGGGAAATACCAGTCTCCGAAAGATTTTCGGCGTTGAGGATCGTAGATGGTAATCTAGTTGTCTTTAACGAGTCCAAAACCCCAGTTTGGTCAACAAATTTAAACTCCACCACCAATTCTGGTTCTGTCCAAGCGGTTCTTTTGGATAGTGGAAACCTTGTCTTGAGAGCGGGGTCTAGTAATAATACTTCAGAGCCTTTATGGCAAAGCTTTGATCATCCCACTCACACATGGTTACCCGGAGGTAAACTTGGATTCAACAACATTACCAAACAAACCCAATTTCTCACTTCATGGAAGAATTCGGAGGATCCTTCATCGGGACTTTTCTCTGTTGGGATAAACCAAGATGGAAGCAATTCGTATAGCATATGGTGGAATAGGACTATACAGTATTGGACCAGCGGATCATGGGATGCAAGTTCGCGTACTTTCAGGTTGGATCCTGAGCTGAGGCTTAATTCCATCTATAATTTCAGATATGTAACAAATGAAAACATAAGTTACTTCACCTATTCTCCTTATGATCCTAAGCTAGTATATCGATGCTTGATGTCTGTCACGGGGCAGGTTCAGCTACTGTCATGGATGGAGAATACCAGGCAATGGAATTTGTTTTGGTCTCAACCAAGAAGACAATGTGAAGTTCATGCAACTTGTGGGCATTCGGGAGTTGCAATGATGCATCAGGGCCCCTCTGTACTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

253

Amino Acids

28.68

Weight (kDa)

7.77

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	10 - 116	5.1e-33	D-mannose binding lectin
S_locus_glycop	PF00954	149 - 246	4.6e-17	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000564)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica	MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica	Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis	pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis	RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata	RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora	Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii	Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa	Rorug01G0022300 Rorug04G0061600
rosa_samantha	Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana	Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	607
AccB7I	CCANNNNNTGG	1 cut(s)	654
AccBSI	CCGCTC	1 cut(s)	218
AccII	CGCG	1 cut(s)	475
AciI	CCGC	3 cut(s)	182, 218, 453
AclWI	GGATC	7 cut(s)	95, 353, 366, 463, 485, 498, 569
AcsI	RAATTY	3 cut(s)	145, 349, 658
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	3 cut(s)	6, 478, 750
AfiI	CCNNNNNNNGG	3 cut(s)	135, 368, 654
AgsI	TTSAA	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	647
AluBI	AGCT	4 cut(s)	258, 499, 583, 625
AluI	AGCT	4 cut(s)	258, 499, 583, 625
Alw26I	GTCTC	2 cut(s)	67, 675
AlwI	GGATC	7 cut(s)	95, 353, 366, 463, 485, 498, 569
AlwNI	CAGNNNCTG	1 cut(s)	628
AoxI	GGCC	1 cut(s)	739
ApaI	GGGCCC	1 cut(s)	743
ApoI	RAATTY	3 cut(s)	145, 349, 658
Asp700I	GAANNNNTTC	1 cut(s)	406
AspS9I	GGNCC	3 cut(s)	447, 739, 740
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	550
AvaII	GGWCC	1 cut(s)	447
BaeGI	GKGCMC	1 cut(s)	743
BamHI	GGATCC	2 cut(s)	358, 490
BanII	GRGCYC	1 cut(s)	743
BarI	GAAGNNNNNNTAC	2 cut(s)	220, 252
BbsI	GAAGAC	1 cut(s)	688
BbvCI	CCTCAGC	1 cut(s)	500
BccI	CCATC	4 cut(s)	89, 392, 521, 631
BciT130I	CCWGG	1 cut(s)	649
BclI	TGATCA	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	2 cut(s)	67, 675
BfaI	CTAG	3 cut(s)	104, 225, 584
BfuAI	ACCTGC	1 cut(s)	607
BglI	GCCNNNNNGGC	1 cut(s)	250
Bme1390I	CCNGG	2 cut(s)	288, 649
Bme18I	GGWCC	1 cut(s)	447
BmgT120I	GGNCC	3 cut(s)	447, 739, 740
BmiI	GGNNCC	4 cut(s)	360, 492, 741, 742
BmrFI	CCNGG	2 cut(s)	288, 649
BmrI	ACTGGG	1 cut(s)	125
BmsI	GCATC	4 cut(s)	454, 584, 720, 742
BmuI	ACTGGG	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	688
Bpu10I	CCTNAGC	3 cut(s)	495, 500, 579
BpuEI	CTTGAG	1 cut(s)	232
BpuMI	CCSGG	1 cut(s)	288
Bsa29I	ATCGAT	1 cut(s)	592
BsaBI	GATNNNNATC	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	675
BsaXI	ACNNNNNCTCC	2 cut(s)	550, 580
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 368, 654
Bse1I	ACTGG	2 cut(s)	59, 131
Bse3DI	GCAATG	2 cut(s)	659, 732
Bse8I	GATNNNNATC	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	649
BseCI	ATCGAT	1 cut(s)	592
BseGI	GGATG	3 cut(s)	265, 469, 642
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	3 cut(s)	135, 368, 654
BseMI	GCAATG	2 cut(s)	659, 732
BseMII	CTCAG	2 cut(s)	486, 491
BseNI	ACTGG	2 cut(s)	59, 131
BseSI	GKGCMC	1 cut(s)	743
Bsh1236I	CGCG	1 cut(s)	475
BshFI	GGCC	1 cut(s)	741
BshVI	ATCGAT	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	3 cut(s)	135, 368, 654
BsmAI	GTCTC	2 cut(s)	67, 675
BsmFI	GGGAC	1 cut(s)	384
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	1 cut(s)	741
Bso31I	GGTCTC	1 cut(s)	675
Bsp120I	GGGCCC	1 cut(s)	739
Bsp1286I	GDGCHC	1 cut(s)	743
Bsp143I	GATC	6 cut(s)	87, 262, 358, 455, 490, 574
BspACI	CCGC	3 cut(s)	182, 218, 453
BspANI	GGCC	1 cut(s)	741
BspCNI	CTCAG	2 cut(s)	487, 492
BspDI	ATCGAT	1 cut(s)	592
BspFNI	CGCG	1 cut(s)	475
BspHI	TCATGA	1 cut(s)	19
BspLI	GGNNCC	4 cut(s)	360, 492, 741, 742
BspMI	ACCTGC	1 cut(s)	607
BspPI	GGATC	7 cut(s)	95, 353, 366, 463, 485, 498, 569
BspTNI	GGTCTC	1 cut(s)	675
BsrBI	CCGCTC	1 cut(s)	218
BsrDI	GCAATG	2 cut(s)	659, 732
BsrI	ACTGG	2 cut(s)	59, 131
BssMI	GATC	6 cut(s)	87, 262, 358, 455, 490, 574
Bst2UI	CCWGG	1 cut(s)	649
Bst4CI	ACNGT	3 cut(s)	31, 441, 630
BstDEI	CTNAG	3 cut(s)	495, 500, 579
BstEII	GGTNACC	1 cut(s)	282
BstF5I	GGATG	3 cut(s)	265, 469, 642
BstFNI	CGCG	1 cut(s)	475
BstKTI	GATC	6 cut(s)	90, 265, 361, 458, 493, 577
BstMAI	GTCTC	2 cut(s)	67, 675
BstMBI	GATC	6 cut(s)	87, 262, 358, 455, 490, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 622
BstNI	CCWGG	1 cut(s)	649
BstPI	GGTNACC	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	286, 647
BstSLI	GKGCMC	1 cut(s)	743
BstUI	CGCG	1 cut(s)	475
BstV2I	GAAGAC	1 cut(s)	688
BstX2I	RGATCY	2 cut(s)	358, 490
BstYI	RGATCY	2 cut(s)	358, 490
Bsu15I	ATCGAT	1 cut(s)	592
BsuRI	GGCC	1 cut(s)	741
BsuTUI	ATCGAT	1 cut(s)	592
BtsCI	GGATG	3 cut(s)	265, 469, 642
BveI	ACCTGC	1 cut(s)	607
CaiI	CAGNNNCTG	1 cut(s)	628
CciI	TCATGA	1 cut(s)	19
Cfr13I	GGNCC	3 cut(s)	447, 739, 740
ClaI	ATCGAT	1 cut(s)	592
Csp6I	GTAC	3 cut(s)	5, 477, 749
CviAII	CATG	6 cut(s)	20, 279, 342, 459, 633, 698
CviJI	RGCY	7 cut(s)	244, 258, 499, 505, 583, 625, 741
CviKI_1	RGCY	7 cut(s)	244, 258, 499, 505, 583, 625, 741
CviQI	GTAC	3 cut(s)	5, 477, 749
DdeI	CTNAG	3 cut(s)	495, 500, 579
DpnI	GATC	6 cut(s)	89, 264, 360, 457, 492, 576
DpnII	GATC	6 cut(s)	87, 262, 358, 455, 490, 574
DraI	TTTAAA	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	743
Eco31I	GGTCTC	1 cut(s)	675
Eco47I	GGWCC	1 cut(s)	447
Eco57I	CTGAAG	1 cut(s)	222
Eco91I	GGTNACC	1 cut(s)	282
EcoO109I	RGGNCCY	2 cut(s)	739, 740
EcoO65I	GGTNACC	1 cut(s)	282
EcoRI	GAATTC	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	647
EcoT22I	ATGCAT	1 cut(s)	735
EcoT38I	GRGCYC	1 cut(s)	743
FaeI	CATG	6 cut(s)	23, 282, 345, 462, 636, 701
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	6 cut(s)	19, 278, 341, 458, 632, 697
FauI	CCCGC	1 cut(s)	211
FauNDI	CATATG	1 cut(s)	419
FbaI	TGATCA	1 cut(s)	262
FokI	GGATG	3 cut(s)	252, 476, 649
FriOI	GRGCYC	1 cut(s)	743
FspBI	CTAG	3 cut(s)	104, 225, 584
HaeIII	GGCC	1 cut(s)	741
HapII	CCGG	1 cut(s)	288
Hin1II	CATG	6 cut(s)	23, 282, 345, 462, 636, 701
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HindIII	AAGCTT	1 cut(s)	256
HinfI	GANTC	2 cut(s)	119, 303
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	1 cut(s)	550
Hpy166II	GTNNAC	2 cut(s)	141, 296
Hpy188I	TCNGA	4 cut(s)	67, 241, 355, 527
Hpy188III	TCNNGA	5 cut(s)	20, 211, 369, 494, 717
Hpy8I	GTNNAC	2 cut(s)	141, 296
HpyAV	CCTTC	1 cut(s)	372
HpyCH4III	ACNGT	3 cut(s)	31, 441, 630
HpyCH4V	TGCA	4 cut(s)	467, 701, 725, 733
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 622
HpyF3I	CTNAG	3 cut(s)	495, 500, 579
Hsp92II	CATG	6 cut(s)	23, 282, 345, 462, 636, 701
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	6 cut(s)	87, 262, 358, 455, 490, 574
LweI	GCATC	4 cut(s)	454, 584, 720, 742
MaeI	CTAG	3 cut(s)	104, 225, 584
MaeIII	GTNAC	4 cut(s)	282, 532, 551, 607
MalI	GATC	6 cut(s)	89, 264, 360, 457, 492, 576
MbiI	CCGCTC	1 cut(s)	218
MboI	GATC	6 cut(s)	87, 262, 358, 455, 490, 574
MboII	GAAGA	2 cut(s)	358, 693
MflI	RGATCY	2 cut(s)	358, 490
MhlI	GDGCHC	1 cut(s)	743
MluCI	AATT	8 cut(s)	145, 163, 329, 349, 406, 508, 520, 658
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	468
MnlI	CCTC	6 cut(s)	18, 78, 284, 349, 495, 754
Mph1103I	ATGCAT	1 cut(s)	735
MroXI	GAANNNNTTC	1 cut(s)	406
MseI	TTAA	3 cut(s)	114, 149, 507
MspA1I	CMGCKG	1 cut(s)	453
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	2 cut(s)	288, 649
Mva1269I	GAATGC	1 cut(s)	712
MvaI	CCWGG	1 cut(s)	649
MvnI	CGCG	1 cut(s)	475
MwoI	GCNNNNNNNGC	2 cut(s)	250, 622
NciI	CCSGG	1 cut(s)	288
NdeI	CATATG	1 cut(s)	419
NdeII	GATC	6 cut(s)	87, 262, 358, 455, 490, 574
NlaIII	CATG	6 cut(s)	23, 282, 345, 462, 636, 701
NlaIV	GGNNCC	4 cut(s)	360, 492, 741, 742
NmuCI	GTSAC	1 cut(s)	607
NsiI	ATGCAT	1 cut(s)	735
PagI	TCATGA	1 cut(s)	19
PctI	GAATGC	1 cut(s)	712
PdmI	GAANNNNTTC	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	303
PflMI	CCANNNNNTGG	1 cut(s)	654
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	647
PspEI	GGTNACC	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	647
PspN4I	GGNNCC	4 cut(s)	360, 492, 741, 742
PspOMI	GGGCCC	1 cut(s)	739
PspPI	GGNCC	3 cut(s)	447, 739, 740
PstNI	CAGNNNCTG	1 cut(s)	628
PsuI	RGATCY	2 cut(s)	358, 490
RsaI	GTAC	3 cut(s)	6, 478, 750
RsaNI	GTAC	3 cut(s)	5, 477, 749
SaqAI	TTAA	3 cut(s)	114, 149, 507
Sau3AI	GATC	6 cut(s)	87, 262, 358, 455, 490, 574
Sau96I	GGNCC	3 cut(s)	447, 739, 740
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	2 cut(s)	288, 649
SduI	GDGCHC	1 cut(s)	743
SetI	ASST	9 cut(s)	207, 260, 295, 488, 501, 563, 585, 621, 627
SfaNI	GCATC	4 cut(s)	454, 584, 720, 742
SinI	GGWCC	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	8 cut(s)	145, 163, 329, 349, 406, 508, 520, 658
SsiI	CCGC	3 cut(s)	182, 218, 453
SspMI	CTAG	3 cut(s)	104, 225, 584
StyD4I	CCNGG	2 cut(s)	286, 647
TaaI	ACNGT	3 cut(s)	31, 441, 630
TaqI	TCGA	1 cut(s)	592
TasI	AATT	8 cut(s)	145, 163, 329, 349, 406, 508, 520, 658
TatI	WGTACW	1 cut(s)	748
TfiI	GAWTC	1 cut(s)	303
Tru1I	TTAA	3 cut(s)	114, 149, 507
Tru9I	TTAA	3 cut(s)	114, 149, 507
TseFI	GTSAC	1 cut(s)	607
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	4 cut(s)	330, 354, 555, 686
Van91I	CCANNNNNTGG	1 cut(s)	654
VpaK11BI	GGWCC	1 cut(s)	447
XapI	RAATTY	3 cut(s)	145, 349, 658
XmnI	GAANNNNTTC	1 cut(s)	406
XspI	CTAG	3 cut(s)	104, 225, 584
Zsp2I	ATGCAT	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.