RchiOBHm_Chr1g0342541

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000564
Physical Location & Seq
Forward (+)
34422572 .. 34426488
3917 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56916

Sequence Viewer

Length: 162 bp
ATGGATGAGATGATCAATCCTCATGGATCAAATGCCTTCAAGTCCGTTTCAGATTGCATCCTTATCTCTACAAGTCACCGATTCAGAGCGACGAAGCTGCCTGCAATCTCAGCTCCTTCCTGCTCACACCGGGCTGCAATAATCGCAAGTTCAGTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

5.61

Weight (kDa)

8.89

Isoelectric Point (pI)

30.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa Rorug01G0022300 Rorug04G0061600
rosa_samantha Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 34
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 2 cut(s) 97, 113
AluI AGCT 2 cut(s) 97, 113
AlwI GGATC 1 cut(s) 34
ApeKI GCWGC 2 cut(s) 97, 134
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 68
BbvI GCAGC 2 cut(s) 84, 121
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BclI TGATCA 1 cut(s) 12
BcnI CCSGG 1 cut(s) 131
BisI GCNGC 2 cut(s) 98, 135
BlsI GCNGC 2 cut(s) 99, 136
Bme1390I CCNGG 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 66
BpuMI CCSGG 1 cut(s) 131
BseGI GGATG 2 cut(s) 10, 57
BseMII CTCAG 1 cut(s) 123
BseXI GCAGC 2 cut(s) 84, 121
BsiSI CCGG 1 cut(s) 130
Bsp143I GATC 2 cut(s) 12, 26
BspCNI CTCAG 1 cut(s) 122
BspPI GGATC 1 cut(s) 34
BssMI GATC 2 cut(s) 12, 26
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 109
BstF5I GGATG 2 cut(s) 10, 57
BstKTI GATC 2 cut(s) 15, 29
BstMBI GATC 2 cut(s) 12, 26
BstMWI GCNNNNNNNGC 2 cut(s) 110, 143
BstSCI CCNGG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 84, 121
BtsCI GGATG 2 cut(s) 10, 57
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 102
CviAII CATG 1 cut(s) 23
CviJI RGCY 3 cut(s) 97, 113, 134
CviKI_1 RGCY 3 cut(s) 97, 113, 134
DdeI CTNAG 1 cut(s) 109
DpnI GATC 2 cut(s) 14, 28
DpnII GATC 2 cut(s) 12, 26
FaeI CATG 1 cut(s) 26
FaiI YATR 1 cut(s) 24
FatI CATG 1 cut(s) 22
FbaI TGATCA 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 98, 135
FokI GGATG 2 cut(s) 17, 44
Fsp4HI GCNGC 2 cut(s) 98, 135
GluI GCNGC 2 cut(s) 98, 135
HapII CCGG 1 cut(s) 130
Hin1II CATG 1 cut(s) 26
HinfI GANTC 1 cut(s) 81
HpaII CCGG 1 cut(s) 130
HphI GGTGA 1 cut(s) 68
Hpy188I TCNGA 2 cut(s) 52, 86
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 46, 126
HpyCH4V TGCA 3 cut(s) 57, 104, 137
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 143
HpyF3I CTNAG 1 cut(s) 109
Hsp92II CATG 1 cut(s) 26
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 2 cut(s) 12, 26
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 3 cut(s) 114, 133, 143
Lsp1109I GCAGC 2 cut(s) 84, 121
LweI GCATC 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 74
MalI GATC 2 cut(s) 14, 28
MboI GATC 2 cut(s) 12, 26
MnlI CCTC 1 cut(s) 30
MseI TTAA 1 cut(s) 160
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 110, 143
NciI CCSGG 1 cut(s) 131
NdeII GATC 2 cut(s) 12, 26
NlaIII CATG 1 cut(s) 26
NmuCI GTSAC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 81
PkrI GCNGC 2 cut(s) 99, 136
SaqAI TTAA 1 cut(s) 160
SatI GCNGC 2 cut(s) 98, 135
Sau3AI GATC 2 cut(s) 12, 26
ScrFI CCNGG 1 cut(s) 131
SetI ASST 2 cut(s) 99, 115
SfaNI GCATC 1 cut(s) 66
SgeI CNNG 7 cut(s) 35, 52, 84, 113, 132, 142, 143
StyD4I CCNGG 1 cut(s) 129
TfiI GAWTC 1 cut(s) 81
Tru1I TTAA 1 cut(s) 160
Tru9I TTAA 1 cut(s) 160
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 2 cut(s) 97, 134
Tsp45I GTSAC 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 34
TspRI CASTG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.