Rh2AG550900

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000564
Physical Location & Seq
Reverse (-)
78123723 .. 78126495
2773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG550900.1

Sequence Viewer

Length: 1128 bp
ATGGGTACCAAAACAAACCCAAATTTCATGGTTTTGGTTCTTTTCTTGTGCCTATATCAAAATACCGGTATTTCCCTTGCAGCTAACACCATCACCACAAACCAATCTCTTTTTGGTGATCAAACCATTGTCTCTGCTGGTGGAGATTTTGAACTGGGTTTCTTTAGACCAGATAACTTCTCAAACTACTGCATAGGCATATGGTACTACAAGCAAGTAGTGCTATCTGAGAAAACCATAGTCTGGGTGGCAAATAGGGAGCAACCAGTTTCTGATAGATTTGCCTCAGTGTTGAGGATTTCAGACGGTAATTTGGTTCTCTTTAATGAGTCCCGTAGTGAAGTTTGGTCCACAAGAGTGACATCCACCACCAGCAGCTCAGGTACTTCTATACATGCAGTTCTTTTAGATAATGGAAACCTTGTCTTAAGAGATGGGTCTGACTCCCAGCTTTTATGGCAAAGTTTTGATCATCAAGCCCAGACTTCTCTACCAGGAAGTACATTTGGACTCGACACTATTGCCAAACAAACCCCAATTCTCACTTCATGGAAGAATTCAAGAAGAATCAGTCTGCAGTGTGGGAATACCGACAAGTTTCGTGAGATGTCTAGTATGTCACTGCCTGAAGGAAAGGAATTAGAATATGCTAGGAGTATTGTGGAATGTGAATCAGCGTGCATAAATAACTGCTCTTGTACTGCTTATGCTTACGTCAACAGTGACTGTTCAATTTGGAGTGGAGACCTCTTAAATCTGAAACAACTCACAGCAGATGACGGTAATGGAGTAACTTTGTACCTCAGGCTTGCAGCTTCCGAGTTTAAGAATCCCAAAAGTGATACTGGTGGTAAGCGGTCCCTTGTAATTGCATTACTCTCAGCAACAGCAGCATTGCTTATAACAATATTTGGTTTTTTCTTATGGAAGAAAACCTTGGGAAATAGAAGGAAGTCTGGAGAAACTATGAGTAATGTTAACATTGGTGGAAAGAATGATATTGAACTCCCACTCTTTGGTTTAAGGAGCATATTAGCAGCTACAAACAACTTTTCTGAAGCTAATAAACTCGGAGAGGGAGGATTTGGCCCTGTGTATAAGGTGAAACTTCCACTTTCTGTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

375

Amino Acids

41.06

Weight (kDa)

7.49

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 79 - 185 6.1e-30 D-mannose binding lectin
PAN_2 PF08276 194 - 252 2.3e-14 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa Rorug01G0022300 Rorug04G0061600
rosa_samantha Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 902
Acc65I GGTACC 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 5
AccB7I CCANNNNNTGG 2 cut(s) 243, 1016
AciI CCGC 1 cut(s) 856
AcsI RAATTY 2 cut(s) 22, 556
AcuI CTGAAG 2 cut(s) 648, 1077
AfaI GTAC 6 cut(s) 7, 206, 385, 502, 700, 800
AfiI CCNNNNNNNGG 2 cut(s) 243, 1016
AflII CTTAAG 1 cut(s) 427
AgeI ACCGGT 1 cut(s) 65
AgsI TTSAA 4 cut(s) 152, 561, 732, 1004
AjnI CCWGG 1 cut(s) 493
AjuI GAANNNNNNNTTGG 4 cut(s) 529, 561, 920, 952
AleI CACNNNNGTG 1 cut(s) 356
AluBI AGCT 6 cut(s) 83, 378, 451, 815, 1040, 1061
AluI AGCT 6 cut(s) 83, 378, 451, 815, 1040, 1061
Alw26I GTCTC 2 cut(s) 136, 738
AlwNI CAGNNNCTG 2 cut(s) 272, 726
AoxI GGCC 1 cut(s) 1087
ApeKI GCWGC 5 cut(s) 80, 375, 812, 890, 1037
ApoI RAATTY 2 cut(s) 22, 556
AsiGI ACCGGT 1 cut(s) 65
Asp718I GGTACC 1 cut(s) 5
AspS9I GGNCC 3 cut(s) 348, 858, 1088
AsuHPI GGTGA 3 cut(s) 85, 128, 1114
AvaII GGWCC 2 cut(s) 348, 858
AxyI CCTNAGG 1 cut(s) 803
BanI GGYRCC 1 cut(s) 5
BbvI GCAGC 5 cut(s) 92, 387, 824, 902, 1049
BccI CCATC 2 cut(s) 98, 428
BcgI CGANNNNNNTGC 2 cut(s) 503, 537
BciT130I CCWGG 1 cut(s) 495
BclI TGATCA 2 cut(s) 118, 469
BcoDI GTCTC 2 cut(s) 136, 738
BfaI CTAG 2 cut(s) 612, 651
BfmI CTRYAG 1 cut(s) 575
BfrI CTTAAG 1 cut(s) 427
BisI GCNGC 5 cut(s) 81, 376, 813, 891, 1038
BlsI GCNGC 5 cut(s) 82, 377, 814, 892, 1039
Bme1390I CCNGG 1 cut(s) 495
Bme18I GGWCC 2 cut(s) 348, 858
BmgT120I GGNCC 3 cut(s) 348, 858, 1088
BmiI GGNNCC 2 cut(s) 7, 860
BmrFI CCNGG 1 cut(s) 495
BmrI ACTGGG 1 cut(s) 164
BmuI ACTGGG 1 cut(s) 164
BpmI CTGGAG 1 cut(s) 978
Bpu10I CCTNAGC 1 cut(s) 379
BsaI GGTCTC 1 cut(s) 738
BsaJI CCNNGG 1 cut(s) 936
BsaWI WCCGGW 1 cut(s) 65
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 1016
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 3 cut(s) 159, 266, 850
Bse21I CCTNAGG 1 cut(s) 803
Bse3DI GCAATG 1 cut(s) 893
BseBI CCWGG 1 cut(s) 495
BseDI CCNNGG 1 cut(s) 936
BseGI GGATG 1 cut(s) 362
BseLI CCNNNNNNNGG 2 cut(s) 243, 1016
BseMI GCAATG 1 cut(s) 893
BseMII CTCAG 5 cut(s) 219, 300, 393, 817, 894
BseNI ACTGG 3 cut(s) 159, 266, 850
BseXI GCAGC 5 cut(s) 92, 387, 824, 902, 1049
BseYI CCCAGC 1 cut(s) 447
BshFI GGCC 1 cut(s) 1089
BshNI GGYRCC 1 cut(s) 5
BshTI ACCGGT 1 cut(s) 65
BsiSI CCGG 1 cut(s) 66
BslFI GGGAC 2 cut(s) 316, 844
BslI CCNNNNNNNGG 2 cut(s) 243, 1016
BsmAI GTCTC 2 cut(s) 136, 738
BsmFI GGGAC 2 cut(s) 316, 844
BsnI GGCC 1 cut(s) 1089
Bso31I GGTCTC 1 cut(s) 738
Bsp143I GATC 2 cut(s) 118, 469
BspACI CCGC 1 cut(s) 856
BspANI GGCC 1 cut(s) 1089
BspCNI CTCAG 5 cut(s) 220, 299, 392, 816, 893
BspLI GGNNCC 2 cut(s) 7, 860
BspMAI CTGCAG 1 cut(s) 579
BspT107I GGYRCC 1 cut(s) 5
BspTI CTTAAG 1 cut(s) 427
BspTNI GGTCTC 1 cut(s) 738
BsrDI GCAATG 1 cut(s) 893
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 3 cut(s) 159, 266, 850
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 936
BssMI GATC 2 cut(s) 118, 469
BssT1I CCWWGG 1 cut(s) 936
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 4 cut(s) 308, 722, 728, 782
BstAFI CTTAAG 1 cut(s) 427
BstAPI GCANNNNNTGC 1 cut(s) 220
BstC8I GCNNGC 2 cut(s) 679, 810
BstDEI CTNAG 5 cut(s) 228, 286, 379, 803, 880
BstF5I GGATG 1 cut(s) 362
BstKTI GATC 2 cut(s) 121, 472
BstMAI GTCTC 2 cut(s) 136, 738
BstMBI GATC 2 cut(s) 118, 469
BstMWI GCNNNNNNNGC 3 cut(s) 220, 457, 890
BstNI CCWGG 1 cut(s) 495
BstNSI RCATGY 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 493
BstSFI CTRYAG 1 cut(s) 575
BstV1I GCAGC 5 cut(s) 92, 387, 824, 902, 1049
Bsu36I CCTNAGG 1 cut(s) 803
BsuRI GGCC 1 cut(s) 1089
BtsCI GGATG 1 cut(s) 362
BtsI GCAGTG 2 cut(s) 584, 620
BtsIMutI CAGTG 4 cut(s) 294, 584, 620, 727
Cac8I GCNNGC 2 cut(s) 679, 810
CaiI CAGNNNCTG 2 cut(s) 272, 726
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 348, 858, 1088
Csp6I GTAC 6 cut(s) 6, 205, 384, 501, 699, 799
CspAI ACCGGT 1 cut(s) 65
CviAII CATG 3 cut(s) 28, 395, 549
CviJI RGCY 9 cut(s) 83, 378, 451, 479, 808, 815, 1040, 1061, 1089
CviKI_1 RGCY 9 cut(s) 83, 378, 451, 479, 808, 815, 1040, 1061, 1089
CviQI GTAC 6 cut(s) 6, 205, 384, 501, 699, 799
DdeI CTNAG 5 cut(s) 228, 286, 379, 803, 880
DpnI GATC 2 cut(s) 120, 471
DpnII GATC 2 cut(s) 118, 469
Eco130I CCWWGG 1 cut(s) 936
Eco31I GGTCTC 1 cut(s) 738
Eco47I GGWCC 2 cut(s) 348, 858
Eco57I CTGAAG 2 cut(s) 648, 1077
Eco81I CCTNAGG 1 cut(s) 803
EcoRI GAATTC 1 cut(s) 556
EcoRII CCWGG 1 cut(s) 493
EcoT14I CCWWGG 1 cut(s) 936
ErhI CCWWGG 1 cut(s) 936
FaeI CATG 3 cut(s) 31, 398, 552
FalI AAGNNNNNCTT 2 cut(s) 920, 952
FaqI GGGAC 2 cut(s) 316, 844
FatI CATG 3 cut(s) 27, 394, 548
FauNDI CATATG 1 cut(s) 200
FbaI TGATCA 2 cut(s) 118, 469
Fnu4HI GCNGC 5 cut(s) 81, 376, 813, 891, 1038
FokI GGATG 1 cut(s) 349
Fsp4HI GCNGC 5 cut(s) 81, 376, 813, 891, 1038
FspBI CTAG 2 cut(s) 612, 651
GluI GCNGC 5 cut(s) 81, 376, 813, 891, 1038
GsaI CCCAGC 1 cut(s) 451
GsuI CTGGAG 1 cut(s) 978
HaeIII GGCC 1 cut(s) 1089
HapII CCGG 1 cut(s) 66
Hin1II CATG 3 cut(s) 31, 398, 552
HincII GTYRAC 2 cut(s) 718, 979
HindII GTYRAC 2 cut(s) 718, 979
HinfI GANTC 6 cut(s) 329, 443, 510, 567, 671, 829
HpaI GTTAAC 1 cut(s) 979
HpaII CCGG 1 cut(s) 66
HphI GGTGA 3 cut(s) 85, 128, 1114
Hpy166II GTNNAC 3 cut(s) 351, 718, 979
Hpy188I TCNGA 8 cut(s) 229, 274, 304, 442, 759, 820, 1057, 1073
Hpy188III TCNNGA 3 cut(s) 561, 602, 957
Hpy8I GTNNAC 3 cut(s) 351, 718, 979
HpyAV CCTTC 2 cut(s) 623, 942
HpyCH4III ACNGT 4 cut(s) 308, 722, 728, 782
HpyCH4IV ACGT 1 cut(s) 714
HpyCH4V TGCA 7 cut(s) 80, 192, 398, 577, 681, 812, 872
HpyF10VI GCNNNNNNNGC 3 cut(s) 220, 457, 890
HpyF3I CTNAG 5 cut(s) 228, 286, 379, 803, 880
HpySE526I ACGT 1 cut(s) 714
Hsp92II CATG 3 cut(s) 31, 398, 552
KpnI GGTACC 1 cut(s) 9
Ksp22I TGATCA 2 cut(s) 118, 469
KspAI GTTAAC 1 cut(s) 979
Kzo9I GATC 2 cut(s) 118, 469
LmnI GCTCC 2 cut(s) 259, 1026
Lsp1109I GCAGC 5 cut(s) 92, 387, 824, 902, 1049
MaeI CTAG 2 cut(s) 612, 651
MaeII ACGT 1 cut(s) 714
MaeIII GTNAC 4 cut(s) 358, 618, 722, 790
MalI GATC 2 cut(s) 120, 471
MboI GATC 2 cut(s) 118, 469
MboII GAAGA 3 cut(s) 565, 576, 940
MluCI AATT 7 cut(s) 22, 310, 537, 556, 638, 732, 867
MlyI GAGTC 3 cut(s) 338, 437, 504
MnlI CCTC 6 cut(s) 288, 295, 758, 812, 1069, 1073
MseI TTAA 7 cut(s) 324, 428, 752, 825, 978, 1022, 1126
MslI CAYNNNNRTG 1 cut(s) 356
MspCI CTTAAG 1 cut(s) 427
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 495
MvaI CCWGG 1 cut(s) 495
MwoI GCNNNNNNNGC 3 cut(s) 220, 457, 890
NdeI CATATG 1 cut(s) 200
NdeII GATC 2 cut(s) 118, 469
NlaIII CATG 3 cut(s) 31, 398, 552
NlaIV GGNNCC 2 cut(s) 7, 860
NmuCI GTSAC 3 cut(s) 358, 618, 722
NspI RCATGY 1 cut(s) 398
OliI CACNNNNGTG 1 cut(s) 356
PfeI GAWTC 3 cut(s) 567, 671, 829
PflMI CCANNNNNTGG 2 cut(s) 243, 1016
PinAI ACCGGT 1 cut(s) 65
PkrI GCNGC 5 cut(s) 82, 377, 814, 892, 1039
PleI GAGTC 3 cut(s) 337, 437, 504
PpsI GAGTC 3 cut(s) 337, 437, 504
PsiI TTATAA 1 cut(s) 902
Psp6I CCWGG 1 cut(s) 493
PspFI CCCAGC 1 cut(s) 447
PspGI CCWGG 1 cut(s) 493
PspN4I GGNNCC 2 cut(s) 7, 860
PspPI GGNCC 3 cut(s) 348, 858, 1088
PstI CTGCAG 1 cut(s) 579
PstNI CAGNNNCTG 2 cut(s) 272, 726
RsaI GTAC 6 cut(s) 7, 206, 385, 502, 700, 800
RsaNI GTAC 6 cut(s) 6, 205, 384, 501, 699, 799
RseI CAYNNNNRTG 1 cut(s) 356
SaqAI TTAA 7 cut(s) 324, 428, 752, 825, 978, 1022, 1126
SatI GCNGC 5 cut(s) 81, 376, 813, 891, 1038
Sau3AI GATC 2 cut(s) 118, 469
Sau96I GGNCC 3 cut(s) 348, 858, 1088
SchI GAGTC 3 cut(s) 338, 437, 504
ScrFI CCNGG 1 cut(s) 495
SfcI CTRYAG 1 cut(s) 575
SinI GGWCC 2 cut(s) 348, 858
SmiMI CAYNNNNRTG 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 427
SmoI CTYRAG 1 cut(s) 427
Sse9I AATT 7 cut(s) 22, 310, 537, 556, 638, 732, 867
SsiI CCGC 1 cut(s) 856
SspI AATATT 1 cut(s) 909
SspMI CTAG 2 cut(s) 612, 651
StyD4I CCNGG 1 cut(s) 493
StyI CCWWGG 1 cut(s) 936
TaaI ACNGT 4 cut(s) 308, 722, 728, 782
TaiI ACGT 1 cut(s) 717
TaqI TCGA 1 cut(s) 513
TasI AATT 7 cut(s) 22, 310, 537, 556, 638, 732, 867
TatI WGTACW 2 cut(s) 500, 698
TfiI GAWTC 3 cut(s) 567, 671, 829
Tru1I TTAA 7 cut(s) 324, 428, 752, 825, 978, 1022, 1126
Tru9I TTAA 7 cut(s) 324, 428, 752, 825, 978, 1022, 1126
TscAI CASTG 4 cut(s) 294, 584, 627, 727
TseFI GTSAC 3 cut(s) 358, 618, 722
TseI GCWGC 5 cut(s) 80, 375, 812, 890, 1037
Tsp45I GTSAC 3 cut(s) 358, 618, 722
TspDTI ATGAA 2 cut(s) 16, 537
TspRI CASTG 4 cut(s) 294, 584, 627, 727
Van91I CCANNNNNTGG 2 cut(s) 243, 1016
Vha464I CTTAAG 1 cut(s) 427
VpaK11BI GGWCC 2 cut(s) 348, 858
XapI RAATTY 2 cut(s) 22, 556
XceI RCATGY 1 cut(s) 398
XcmI CCANNNNNNNNNTGG 2 cut(s) 110, 244
XspI CTAG 2 cut(s) 612, 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.