Rw4G010790

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000564
Physical Location & Seq
Forward (+)
25277111 .. 25280331
3221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G010790.1

Sequence Viewer

Length: 2511 bp
ATGGATACCAAAACCAGCCCGACTACGTTCATGATTTTCATTCTCTTCTCATACCTACATCTCAAGACTCATGTCTCCCTCGCAACCGATGCCATCACCGCAGACCAATCTCTCTCCGGTGACGAAACCATTGTCTCCTCGGGTGGTGTTTTTGAACTCGGTTTCTTCAAACCAGGTAAACTTCCAAACTACTACGTAGGCATGTGGTACTACAAGCGAGTAGTAACTGTGAAAACCATAGTCTGGGTGGCAAATAGAAAACAACCAGTATCCGATAGATTTACTTCGGTGTTGAGGATCATAGATAGTAATTTAGTCCTCGTTGATGAGACCAAAAGTCTTGTTTGGTCCACAAATGTGACCTCCACCACCACCTCAGGCTCAGCTACTTCTATACAAGCAGTTCTTTTAGACAATGGCAACCTTGTCTTAAGAGTTGGATCCAATTCATCATTACTGCCGTTATGGCAAAGTTTTGACCATCCAGCTCATACTTGGCTAGCAGGAAGTAAAATTGGATTCAACAATGTTACCAAACAAACCCAAAAACTCACTTCATGGAAGAACTCCGAGGATCCTGCACCGGGTCTTTACTCTCTTGAGCTAGACCCGAATGGTAGCAACTCATATATCCTACTGTGGAATAGTTCTAGACAGTACTGGACCAGTGGATCTTGGGACGAGCATAATCGAATTTTCAGCTTGATTCCTGAAATGAGGCTTAACTATATCTACAATTGCAGCTATGTTACAAACGAAAACGAAAGCTATTTCACCTATGCTCTTAATGATCCTAAAAAAATATCTCAGGCAGTTATGCATTTCTCGGGGCAGATCCAGCAACTGACATGGTCGGAGACTTCCAAGCAGTGGATTTTGTTTTGGTCCCAACCAAGAAAACAATGTGAAGTTTATGGTTTGTGCGGGGCATTCAGCACTTGCAATGCCACGTCTTTGCCCTCATGTAGCTGTTTGAAGGGTTTTGAGCCAAAACTTCTGGGTGATTGGAACTTAAATGATCATGCTGGCGGGTGTTCAAGAATAACCGGTCTTCAGTGTGGAAATGCTACTAGTCTTAATGGGACACAAGACCAGTTTCTAGAAATGACTAGAATGACATTGTCTGAAAATGATCAATATGCAGAGGTCGAGAGTATTGTGGAATGTGAATCCATCTGCTTAAATCACTGCTCTTGCACTGCTTATTCATATGAAAGTGGTGGATGTTCAATTTGGAATGGAGATCTCTTGCATCTGCAACAGCTTGAAGCAAGTGATACTAATGGAAGAACAATGTACATCAGACTTGCAGCTTCCGAGTTCGAGAATCCTCCTAAAAGTAGTGAGGGTCATACTGATGATAAGTGGTCTCTTGTAATTGCAATAATCTCAGCAACAACAGGATTCCTTACAATAATTTTTGGCTATTTTTTATGGAAGAAAACTATGGGAAAGAGAAGAGAGCATAGGAGGAGGAATATCAATTCAAGTAATCTGGGTGCTAGAGATGGAAACGATGATACAGAACTACCACTCATTGGTTTGAAGAGTATATTAGCTGCTACAAACAACTTCTCTGAAGCTAATAAACTTGGAGAGGGAGGATTTGGCCCTGTTTATAAGGGGATTTTTCCTGACAATCAAGAAGTAGCAATAAAACGGCTTTCTACGAAGTCTGGGCAAGGACATCGAGAGTTCATGAATGAGTTAAAGCTTATAGCCAAGCTTCAGCATAGAAATCTTGAGGAAATGATACTGATTTATGAGTACATGCCCAACCGAAGTTTGGATAAATTCTTATTTGATCCATCTGAACAGACAAAATTGGACTGGGATAGACGTTTTAGGATTATAGAAGGTATTGCTCAGGGAGTACTCTATATCCACAAGTACTCCAGATTGAAAATAATTCATAGAGACTTAAAAGCAAGTAATATTCTGTTGGATGGAGCAATGAACCCCAAAGTATCAGACTTCGGAATGGCCAAGATTTTTGAGTTAAACCAAATTGAAGCAAATACAAACAGGGTTGTTGGGACATATGGCTACATGTCACCTGAGTATGCACGTTATGGTCATTTCTCTGAAAAATTGGACGTATTTAGCTTTGGAGTGTTATTGTTGGAGATTGTAACCGGAAAGAAAAATAGTGCTTTCTATCATTTCGAGCATTCACTGACTCTTGCCGGGTGGGCATGGAAATTATGGAAAGAAAACAGAGGAATGGAGGTGATTGATGCATCGGTACGGGAAACATGCCGGCCTCATGAAGCTTTAAGGTGTATCCATGTAGGGTTTTTGTGCGTACAAGAAGCTCCAGTTGATCGACCAACAATGTCTGCTGTAATTCATATGCTGCAAAGCAACGAAGCCACATCACTTCCACCCTCCAAAGAGCCTGCTTTTTCAATACACGATATGAATTCCAATGTTGCTGAATCTTCTTCTCAAACGTCTACTAGTGCTTGTTCCAAGAATGCATTCACAATTAGTTTGCCAGAAGCTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

836

Amino Acids

94.04

Weight (kDa)

6.44

Isoelectric Point (pI)

39.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 79 - 188 4.9e-29 D-mannose binding lectin
S_locus_glycop PF00954 221 - 331 6.7e-30 S-locus glycoprotein domain
PAN_2 PF08276 361 - 417 2.5e-13 PAN-like domain
Pkinase PF00069 526 - 716 1.1e-37 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 528 - 786 6.8e-39 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa Rorug01G0022300 Rorug04G0061600
rosa_samantha Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1620
AccB7I CCANNNNNTGG 3 cut(s) 243, 870, 1538
AccI GTMKAC 1 cut(s) 2456
AciI CCGC 3 cut(s) 99, 924, 1029
AclWI GGATC 9 cut(s) 305, 435, 448, 569, 582, 679, 785, 829, 1799
AcoI YGGCCR 1 cut(s) 1983
AcsI RAATTY 3 cut(s) 693, 1793, 2422
AcuI CTGAAG 3 cut(s) 1037, 1599, 1712
AfaI GTAC 8 cut(s) 209, 659, 1298, 1769, 1875, 1892, 2247, 2307
AfiI CCNNNNNNNGG 5 cut(s) 243, 584, 870, 1538, 1786
AflII CTTAAG 1 cut(s) 430
AflIII ACRYGT 1 cut(s) 2049
AgeI ACCGGT 1 cut(s) 1046
AhdI GACNNNNNGTC 1 cut(s) 336
AhlI ACTAGT 2 cut(s) 1070, 2459
AjiI CACGTC 1 cut(s) 951
AjnI CCWGG 1 cut(s) 172
AjuI GAANNNNNNNTTGG 2 cut(s) 2465, 2497
AleI CACNNNNGTG 1 cut(s) 356
Alw26I GTCTC 6 cut(s) 79, 139, 323, 851, 1374, 1911
AlwI GGATC 9 cut(s) 305, 435, 448, 569, 582, 679, 785, 829, 1799
AlwNI CAGNNNCTG 1 cut(s) 844
Ama87I CYCGRG 2 cut(s) 139, 826
AoxI GGCC 3 cut(s) 1609, 1983, 2261
ApeKI GCWGC 4 cut(s) 741, 1310, 1559, 2356
ApoI RAATTY 3 cut(s) 693, 1793, 2422
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
AsiGI ACCGGT 1 cut(s) 1046
Asp700I GAANNNNTTC 1 cut(s) 2480
AspS9I GGNCC 4 cut(s) 348, 663, 885, 1610
AsuC2I CCSGG 2 cut(s) 585, 2188
AsuHPI GGTGA 6 cut(s) 88, 131, 766, 1013, 2046, 2242
AsuNHI GCTAGC 1 cut(s) 499
AvaI CYCGRG 2 cut(s) 139, 826
AvaII GGWCC 3 cut(s) 348, 663, 885
AxyI CCTNAGG 1 cut(s) 376
BalI TGGCCA 1 cut(s) 1985
BamHI GGATCC 2 cut(s) 440, 574
BbsI GAAGAC 1 cut(s) 1043
BbvI GCAGC 4 cut(s) 753, 1322, 1546, 2343
BccI CCATC 6 cut(s) 101, 489, 1181, 1502, 1816, 1940
BceAI ACGGC 2 cut(s) 445, 1676
BcgI CGANNNNNNTGC 4 cut(s) 560, 594, 1670, 1704
BciT130I CCWGG 1 cut(s) 174
BciVI GTATCC 2 cut(s) 280, 2294
BclI TGATCA 2 cut(s) 1018, 1132
BcnI CCSGG 2 cut(s) 585, 2188
BcoDI GTCTC 6 cut(s) 79, 139, 323, 851, 1374, 1911
BcuI ACTAGT 2 cut(s) 1070, 2459
BfaI CTAG 8 cut(s) 500, 605, 651, 1071, 1100, 1110, 1503, 2460
BfrI CTTAAG 1 cut(s) 430
BfuI GTATCC 2 cut(s) 280, 2294
BglI GCCNNNNNGGC 2 cut(s) 466, 2192
BglII AGATCT 1 cut(s) 1243
BisI GCNGC 4 cut(s) 742, 1311, 1560, 2357
BlpI GCTNAGC 1 cut(s) 382
BlsI GCNGC 4 cut(s) 743, 1312, 1561, 2358
BmcAI AGTACT 3 cut(s) 659, 1875, 1892
Bme1390I CCNGG 3 cut(s) 174, 585, 2188
Bme18I GGWCC 3 cut(s) 348, 663, 885
BmeRI GACNNNNNGTC 1 cut(s) 336
BmeT110I CYCGRG 2 cut(s) 139, 826
BmgBI CACGTC 1 cut(s) 951
BmgT120I GGNCC 4 cut(s) 348, 663, 885, 1610
BmiI GGNNCC 3 cut(s) 442, 576, 887
BmrFI CCNGG 3 cut(s) 174, 585, 2188
BmrI ACTGGG 1 cut(s) 1840
BmsI GCATC 4 cut(s) 79, 1261, 2227, 2249
BmtI GCTAGC 1 cut(s) 503
BmuI ACTGGG 1 cut(s) 1840
BoxI GACNNNNGTC 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 1043
BpmI CTGGAG 2 cut(s) 1879, 2301
Bpu10I CCTNAGC 1 cut(s) 1866
Bpu1102I GCTNAGC 1 cut(s) 382
BpuEI CTTGAG 3 cut(s) 47, 620, 1763
BpuMI CCSGG 2 cut(s) 585, 2188
BsaAI YACGTR 1 cut(s) 196
BsaI GGTCTC 2 cut(s) 323, 1374
BsaJI CCNNGG 2 cut(s) 138, 570
BsaWI WCCGGW 3 cut(s) 116, 1046, 2135
BsaXI ACNNNNNCTCC 2 cut(s) 1877, 1907
Bsc4I CCNNNNNNNGG 5 cut(s) 243, 584, 870, 1538, 1786
Bse118I RCCGGY 2 cut(s) 1046, 2259
Bse1I ACTGG 6 cut(s) 266, 665, 666, 1093, 1835, 2318
Bse21I CCTNAGG 1 cut(s) 376
Bse3DI GCAATG 2 cut(s) 949, 1959
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 138, 570
BseGI GGATG 3 cut(s) 481, 1229, 1951
BseLI CCNNNNNNNGG 5 cut(s) 243, 584, 870, 1538, 1786
BseMI GCAATG 2 cut(s) 949, 1959
BseMII CTCAG 6 cut(s) 390, 396, 821, 1404, 1880, 2049
BseNI ACTGG 6 cut(s) 266, 665, 666, 1093, 1835, 2318
BseRI GAGGAG 2 cut(s) 127, 1486
BseXI GCAGC 4 cut(s) 753, 1322, 1546, 2343
BsgI GTGCAG 1 cut(s) 564
BshFI GGCC 3 cut(s) 1611, 1985, 2263
BshTI ACCGGT 1 cut(s) 1046
BsiHKCI CYCGRG 2 cut(s) 139, 826
BsiSI CCGG 6 cut(s) 117, 584, 1047, 2136, 2187, 2260
BslFI GGGAC 4 cut(s) 692, 871, 1096, 2050
BslI CCNNNNNNNGG 5 cut(s) 243, 584, 870, 1538, 1786
BsmAI GTCTC 6 cut(s) 79, 139, 323, 851, 1374, 1911
BsmFI GGGAC 4 cut(s) 692, 871, 1096, 2050
BsmI GAATGC 4 cut(s) 929, 2170, 2480, 2482
BsnI GGCC 3 cut(s) 1611, 1985, 2263
Bso31I GGTCTC 2 cut(s) 323, 1374
BsoBI CYCGRG 2 cut(s) 139, 826
Bsp1407I TGTACA 1 cut(s) 1296
Bsp1720I GCTNAGC 1 cut(s) 382
BspACI CCGC 3 cut(s) 99, 924, 1029
BspANI GGCC 3 cut(s) 1611, 1985, 2263
BspCNI CTCAG 6 cut(s) 389, 395, 820, 1403, 1879, 2050
BspHI TCATGA 3 cut(s) 30, 1698, 2266
BspLI GGNNCC 3 cut(s) 442, 576, 887
BspOI GCTAGC 1 cut(s) 503
BspPI GGATC 9 cut(s) 305, 435, 448, 569, 582, 679, 785, 829, 1799
BspTI CTTAAG 1 cut(s) 430
BspTNI GGTCTC 2 cut(s) 323, 1374
BsrDI GCAATG 2 cut(s) 949, 1959
BsrFI RCCGGY 2 cut(s) 1046, 2259
BsrGI TGTACA 1 cut(s) 1296
BsrI ACTGG 6 cut(s) 266, 665, 666, 1093, 1835, 2318
BssAI RCCGGY 2 cut(s) 1046, 2259
BssECI CCNNGG 2 cut(s) 138, 570
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 3 cut(s) 229, 639, 657
Bst6I CTCTTC 3 cut(s) 50, 1453, 1541
BstAFI CTTAAG 1 cut(s) 430
BstAPI GCANNNNNTGC 1 cut(s) 89
BstAUI TGTACA 1 cut(s) 1296
BstBAI YACGTR 1 cut(s) 196
BstC8I GCNNGC 4 cut(s) 501, 1027, 2261, 2400
BstDEI CTNAG 6 cut(s) 376, 382, 807, 1390, 1866, 2058
BstF5I GGATG 3 cut(s) 481, 1229, 1951
BstMAI GTCTC 6 cut(s) 79, 139, 323, 851, 1374, 1911
BstMWI GCNNNNNNNGC 5 cut(s) 89, 98, 466, 838, 2192
BstNI CCWGG 1 cut(s) 174
BstNSI RCATGY 4 cut(s) 205, 1774, 2053, 2259
BstPAI GACNNNNGTC 1 cut(s) 71
BstSCI CCNGG 3 cut(s) 172, 583, 2186
BstSNI TACGTA 1 cut(s) 196
BstV1I GCAGC 4 cut(s) 753, 1322, 1546, 2343
BstV2I GAAGAC 1 cut(s) 1043
BstX2I RGATCY 5 cut(s) 440, 574, 671, 834, 1243
BstYI RGATCY 5 cut(s) 440, 574, 671, 834, 1243
Bsu36I CCTNAGG 1 cut(s) 376
BsuI GTATCC 2 cut(s) 280, 2294
BsuRI GGCC 3 cut(s) 1611, 1985, 2263
BtrI CACGTC 1 cut(s) 951
BtsCI GGATG 3 cut(s) 481, 1229, 1951
BtsI GCAGTG 3 cut(s) 875, 1186, 1197
BtsIMutI CAGTG 6 cut(s) 673, 875, 1061, 1186, 1197, 2174
Cac8I GCNNGC 4 cut(s) 501, 1027, 2261, 2400
CaiI CAGNNNCTG 1 cut(s) 844
CciI TCATGA 3 cut(s) 30, 1698, 2266
Cfr10I RCCGGY 2 cut(s) 1046, 2259
Cfr13I GGNCC 4 cut(s) 348, 663, 885, 1610
CsiI ACCWGGT 1 cut(s) 172
Csp6I GTAC 8 cut(s) 208, 658, 1297, 1768, 1874, 1891, 2246, 2306
CspAI ACCGGT 1 cut(s) 1046
CviQI GTAC 8 cut(s) 208, 658, 1297, 1768, 1874, 1891, 2246, 2306
DdeI CTNAG 6 cut(s) 376, 382, 807, 1390, 1866, 2058
DriI GACNNNNNGTC 1 cut(s) 336
EaeI YGGCCR 1 cut(s) 1983
Eam1104I CTCTTC 3 cut(s) 50, 1453, 1541
Eam1105I GACNNNNNGTC 1 cut(s) 336
EarI CTCTTC 3 cut(s) 50, 1453, 1541
Eco105I TACGTA 1 cut(s) 196
Eco31I GGTCTC 2 cut(s) 323, 1374
Eco47I GGWCC 3 cut(s) 348, 663, 885
Eco57I CTGAAG 3 cut(s) 1037, 1599, 1712
Eco81I CCTNAGG 1 cut(s) 376
Eco88I CYCGRG 2 cut(s) 139, 826
EcoRI GAATTC 1 cut(s) 2422
EcoRII CCWGG 1 cut(s) 172
EcoT22I ATGCAT 3 cut(s) 822, 2242, 2482
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FaqI GGGAC 4 cut(s) 692, 871, 1096, 2050
FauI CCCGC 2 cut(s) 917, 1022
FauNDI CATATG 3 cut(s) 1210, 2041, 2352
FbaI TGATCA 2 cut(s) 1018, 1132
FblI GTMKAC 1 cut(s) 2456
Fnu4HI GCNGC 4 cut(s) 742, 1311, 1560, 2357
FokI GGATG 3 cut(s) 468, 1236, 1958
Fsp4HI GCNGC 4 cut(s) 742, 1311, 1560, 2357
FspBI CTAG 8 cut(s) 500, 605, 651, 1071, 1100, 1110, 1503, 2460
GluI GCNGC 4 cut(s) 742, 1311, 1560, 2357
GsuI CTGGAG 2 cut(s) 1879, 2301
HaeIII GGCC 3 cut(s) 1611, 1985, 2263
HapII CCGG 6 cut(s) 117, 584, 1047, 2136, 2187, 2260
HindIII AAGCTT 3 cut(s) 1712, 1724, 2271
HinfI GANTC 8 cut(s) 67, 519, 706, 1169, 1327, 1404, 2179, 2438
HpaII CCGG 6 cut(s) 117, 584, 1047, 2136, 2187, 2260
HphI GGTGA 6 cut(s) 88, 131, 766, 1013, 2046, 2242
Hpy166II GTNNAC 3 cut(s) 179, 351, 2457
Hpy8I GTNNAC 3 cut(s) 179, 351, 2457
HpyAV CCTTC 2 cut(s) 970, 1850
HpyCH4III ACNGT 3 cut(s) 229, 639, 657
HpyCH4IV ACGT 7 cut(s) 26, 195, 950, 1840, 2068, 2097, 2453
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 98, 466, 838, 2192
HpyF3I CTNAG 6 cut(s) 376, 382, 807, 1390, 1866, 2058
HpySE526I ACGT 7 cut(s) 26, 195, 950, 1840, 2068, 2097, 2453
KroI GCCGGC 1 cut(s) 2259
KroNI GCCGGC 1 cut(s) 2261
Ksp22I TGATCA 2 cut(s) 1018, 1132
LmnI GCTCC 2 cut(s) 1949, 2320
Lsp1109I GCAGC 4 cut(s) 753, 1322, 1546, 2343
LweI GCATC 4 cut(s) 79, 1261, 2227, 2249
MabI ACCWGGT 1 cut(s) 172
MaeI CTAG 8 cut(s) 500, 605, 651, 1071, 1100, 1110, 1503, 2460
MaeII ACGT 7 cut(s) 26, 195, 950, 1840, 2068, 2097, 2453
MaeIII GTNAC 7 cut(s) 119, 223, 358, 529, 748, 2052, 2131
MfeI CAATTG 1 cut(s) 736
MflI RGATCY 5 cut(s) 440, 574, 671, 834, 1243
MlsI TGGCCA 1 cut(s) 1985
MluNI TGGCCA 1 cut(s) 1985
MlyI GAGTC 2 cut(s) 61, 2173
MmeI TCCRAC 4 cut(s) 418, 834, 1923, 2103
Mox20I TGGCCA 1 cut(s) 1985
Mph1103I ATGCAT 3 cut(s) 822, 2242, 2482
MroNI GCCGGC 1 cut(s) 2259
MroXI GAANNNNTTC 1 cut(s) 2480
MscI TGGCCA 1 cut(s) 1985
MslI CAYNNNNRTG 2 cut(s) 356, 1356
Msp20I TGGCCA 1 cut(s) 1985
MspCI CTTAAG 1 cut(s) 430
MspI CCGG 6 cut(s) 117, 584, 1047, 2136, 2187, 2260
MspR9I CCNGG 3 cut(s) 174, 585, 2188
MunI CAATTG 1 cut(s) 736
Mva1269I GAATGC 4 cut(s) 929, 2170, 2480, 2482
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 5 cut(s) 89, 98, 466, 838, 2192
NaeI GCCGGC 1 cut(s) 2261
NciI CCSGG 2 cut(s) 585, 2188
NdeI CATATG 3 cut(s) 1210, 2041, 2352
NgoMIV GCCGGC 1 cut(s) 2259
NheI GCTAGC 1 cut(s) 499
NlaIV GGNNCC 3 cut(s) 442, 576, 887
NmuCI GTSAC 3 cut(s) 119, 358, 2052
NsiI ATGCAT 3 cut(s) 822, 2242, 2482
NspI RCATGY 4 cut(s) 205, 1774, 2053, 2259
OliI CACNNNNGTG 1 cut(s) 356
PagI TCATGA 3 cut(s) 30, 1698, 2266
PciI ACATGT 1 cut(s) 2049
PctI GAATGC 4 cut(s) 929, 2170, 2480, 2482
PdiI GCCGGC 1 cut(s) 2261
PdmI GAANNNNTTC 1 cut(s) 2480
PfeI GAWTC 6 cut(s) 519, 706, 1169, 1327, 1404, 2438
PflFI GACNNNGTC 2 cut(s) 850, 1120
PflMI CCANNNNNTGG 3 cut(s) 243, 870, 1538
PinAI ACCGGT 1 cut(s) 1046
PkrI GCNGC 4 cut(s) 743, 1312, 1561, 2358
PleI GAGTC 2 cut(s) 61, 2173
PpsI GAGTC 2 cut(s) 61, 2173
Ppu21I YACGTR 1 cut(s) 196
PscI ACATGT 1 cut(s) 2049
PshAI GACNNNNGTC 1 cut(s) 71
PsiI TTATAA 1 cut(s) 1620
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 3 cut(s) 442, 576, 887
PspPI GGNCC 4 cut(s) 348, 663, 885, 1610
PstNI CAGNNNCTG 1 cut(s) 844
PsuI RGATCY 5 cut(s) 440, 574, 671, 834, 1243
PsyI GACNNNGTC 2 cut(s) 850, 1120
RsaI GTAC 8 cut(s) 209, 659, 1298, 1769, 1875, 1892, 2247, 2307
RsaNI GTAC 8 cut(s) 208, 658, 1297, 1768, 1874, 1891, 2246, 2306
RseI CAYNNNNRTG 2 cut(s) 356, 1356
SatI GCNGC 4 cut(s) 742, 1311, 1560, 2357
Sau96I GGNCC 4 cut(s) 348, 663, 885, 1610
ScaI AGTACT 3 cut(s) 659, 1875, 1892
SchI GAGTC 2 cut(s) 61, 2173
ScrFI CCNGG 3 cut(s) 174, 585, 2188
SexAI ACCWGGT 1 cut(s) 172
SfaNI GCATC 4 cut(s) 79, 1261, 2227, 2249
SinI GGWCC 3 cut(s) 348, 663, 885
SmiMI CAYNNNNRTG 2 cut(s) 356, 1356
SmlI CTYRAG 4 cut(s) 62, 430, 599, 1742
SmoI CTYRAG 4 cut(s) 62, 430, 599, 1742
SnaBI TACGTA 1 cut(s) 196
SpeI ACTAGT 2 cut(s) 1070, 2459
SsiI CCGC 3 cut(s) 99, 924, 1029
SspI AATATT 1 cut(s) 1936
SspMI CTAG 8 cut(s) 500, 605, 651, 1071, 1100, 1110, 1503, 2460
StyD4I CCNGG 3 cut(s) 172, 583, 2186
TaaI ACNGT 3 cut(s) 229, 639, 657
TaiI ACGT 7 cut(s) 29, 198, 953, 1843, 2071, 2100, 2456
TaqI TCGA 7 cut(s) 691, 1149, 1323, 1690, 2166, 2326, 2506
TatI WGTACW 5 cut(s) 657, 1296, 1767, 1873, 1890
TfiI GAWTC 6 cut(s) 519, 706, 1169, 1327, 1404, 2438
TscAI CASTG 6 cut(s) 673, 875, 1061, 1193, 1204, 2181
TseFI GTSAC 3 cut(s) 119, 358, 2052
TseI GCWGC 4 cut(s) 741, 1310, 1559, 2356
Tsp45I GTSAC 3 cut(s) 119, 358, 2052
TspRI CASTG 6 cut(s) 673, 875, 1061, 1193, 1204, 2181
Tth111I GACNNNGTC 2 cut(s) 850, 1120
Van91I CCANNNNNTGG 3 cut(s) 243, 870, 1538
Vha464I CTTAAG 1 cut(s) 430
VpaK11BI GGWCC 3 cut(s) 348, 663, 885
XapI RAATTY 3 cut(s) 693, 1793, 2422
XbaI TCTAGA 2 cut(s) 650, 1099
XceI RCATGY 4 cut(s) 205, 1774, 2053, 2259
XcmI CCANNNNNNNNNTGG 3 cut(s) 244, 492, 1783
XmiI GTMKAC 1 cut(s) 2456
XmnI GAANNNNTTC 1 cut(s) 2480
XspI CTAG 8 cut(s) 500, 605, 651, 1071, 1100, 1110, 1503, 2460
ZrmI AGTACT 3 cut(s) 659, 1875, 1892
Zsp2I ATGCAT 3 cut(s) 822, 2242, 2482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.