RLG00000008829

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
40353999 .. 40354538
540 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008829

Sequence Viewer

Length: 540 bp
ATGACCTCCACCACCACCTCAGGCTCAGCTACTTCTATACAAGCAGTTCTTTTAGACAATGGCAACCTTGTCTTAAGAGTTGGATCCAATTCATCATTACTGCCGTTATGGCAAAGTTTTGACCATCCAGCTCATACTTGGCTAGCAGGAAGTAAAATTGGATTCAACAATGTTACCAAACAAACCCAAAAACTCACTTCATGGAAGAACTCCCAGGATCCTGCACCGGGTCTTTACTCTCTTGAGCTAGACCCGAATGGTAGCAACTCATATATCCTACTGTGGAATAGTTCTAGACAGTACTGGACCAGTGGATCTTGGGACGAGCATAATCGAATTTTCAGCTTGATTCCTGAAATGAGGCTTAACTATATCTACAATTGCAGCTATGTTACGAACGAAAACGAAAGCTATTTCACCTATGCTCTTAATGATCCTAAAAAAATATCTCAGGCAGTTATGCATTTCTCGGGGCAGATCCACCAACCACTACCACAAATGTGGGCTAAGGATACTAATCTTTCCCCACTTTTAGGCTAA

Protein Analysis

180

Amino Acids

20.15

Weight (kDa)

6.49

Isoelectric Point (pI)

32.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 3 - 69 2e-17 D-mannose binding lectin
S_locus_glycop PF00954 102 - 163 9e-07 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa Rorug01G0022300 Rorug04G0061600
rosa_samantha Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 7 cut(s) 78, 91, 212, 225, 322, 428, 472
AcsI RAATTY 1 cut(s) 336
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 2 cut(s) 227, 533
AflII CTTAAG 1 cut(s) 73
AgsI TTSAA 1 cut(s) 166
AjnI CCWGG 1 cut(s) 213
AleI CACNNNNGTG 1 cut(s) 499
AluBI AGCT 6 cut(s) 29, 131, 247, 345, 387, 411
AluI AGCT 6 cut(s) 29, 131, 247, 345, 387, 411
AlwI GGATC 7 cut(s) 78, 91, 212, 225, 322, 428, 472
Ama87I CYCGRG 1 cut(s) 469
ApeKI GCWGC 1 cut(s) 384
ApoI RAATTY 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 306
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 409
AsuNHI GCTAGC 1 cut(s) 142
AvaI CYCGRG 1 cut(s) 469
AvaII GGWCC 1 cut(s) 306
AxyI CCTNAGG 1 cut(s) 19
BamHI GGATCC 2 cut(s) 83, 217
BbvI GCAGC 1 cut(s) 396
BccI CCATC 1 cut(s) 132
BceAI ACGGC 1 cut(s) 88
BciT130I CCWGG 1 cut(s) 215
BciVI GTATCC 1 cut(s) 505
BcnI CCSGG 1 cut(s) 228
BfaI CTAG 3 cut(s) 143, 248, 294
BfrI CTTAAG 1 cut(s) 73
BfuI GTATCC 1 cut(s) 505
BglI GCCNNNNNGGC 1 cut(s) 109
BisI GCNGC 1 cut(s) 385
BlpI GCTNAGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 386
BmcAI AGTACT 1 cut(s) 302
Bme1390I CCNGG 2 cut(s) 215, 228
Bme18I GGWCC 1 cut(s) 306
BmeT110I CYCGRG 1 cut(s) 469
BmgT120I GGNCC 1 cut(s) 306
BmiI GGNNCC 2 cut(s) 85, 219
BmrFI CCNGG 2 cut(s) 215, 228
BmtI GCTAGC 1 cut(s) 146
Bpu10I CCTNAGC 1 cut(s) 507
Bpu1102I GCTNAGC 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 516
BsaJI CCNNGG 1 cut(s) 213
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 533
Bse1I ACTGG 2 cut(s) 308, 309
Bse21I CCTNAGG 1 cut(s) 19
Bse8I GATNNNNATC 1 cut(s) 516
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 124
BseJI GATNNNNATC 1 cut(s) 516
BseLI CCNNNNNNNGG 2 cut(s) 227, 533
BseMII CTCAG 3 cut(s) 33, 39, 464
BseNI ACTGG 2 cut(s) 308, 309
BseXI GCAGC 1 cut(s) 396
BsgI GTGCAG 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 469
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 2 cut(s) 227, 533
BsmFI GGGAC 1 cut(s) 335
BsoBI CYCGRG 1 cut(s) 469
Bsp143I GATC 5 cut(s) 83, 217, 314, 433, 477
Bsp1720I GCTNAGC 1 cut(s) 25
BspCNI CTCAG 3 cut(s) 32, 38, 463
BspLI GGNNCC 2 cut(s) 85, 219
BspOI GCTAGC 1 cut(s) 146
BspPI GGATC 7 cut(s) 78, 91, 212, 225, 322, 428, 472
BspTI CTTAAG 1 cut(s) 73
BsrI ACTGG 2 cut(s) 308, 309
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 5 cut(s) 83, 217, 314, 433, 477
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 2 cut(s) 282, 300
BstAFI CTTAAG 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 4 cut(s) 19, 25, 450, 507
BstF5I GGATG 1 cut(s) 124
BstKTI GATC 5 cut(s) 86, 220, 317, 436, 480
BstMBI GATC 5 cut(s) 83, 217, 314, 433, 477
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 2 cut(s) 213, 226
BstV1I GCAGC 1 cut(s) 396
BstX2I RGATCY 4 cut(s) 83, 217, 314, 477
BstXI CCANNNNNNTGG 1 cut(s) 501
BstYI RGATCY 4 cut(s) 83, 217, 314, 477
Bsu36I CCTNAGG 1 cut(s) 19
BsuI GTATCC 1 cut(s) 505
BtsCI GGATG 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 306
Csp6I GTAC 1 cut(s) 301
CviAII CATG 1 cut(s) 201
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 4 cut(s) 19, 25, 450, 507
DpnI GATC 5 cut(s) 85, 219, 316, 435, 479
DpnII GATC 5 cut(s) 83, 217, 314, 433, 477
Eco47I GGWCC 1 cut(s) 306
Eco81I CCTNAGG 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 469
EcoRII CCWGG 1 cut(s) 213
EcoT22I ATGCAT 1 cut(s) 465
FaeI CATG 1 cut(s) 204
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FaqI GGGAC 1 cut(s) 335
FatI CATG 1 cut(s) 200
Fnu4HI GCNGC 1 cut(s) 385
FokI GGATG 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 385
FspBI CTAG 3 cut(s) 143, 248, 294
GluI GCNGC 1 cut(s) 385
HapII CCGG 1 cut(s) 227
Hin1II CATG 1 cut(s) 204
HinfI GANTC 2 cut(s) 162, 349
HpaII CCGG 1 cut(s) 227
HphI GGTGA 1 cut(s) 409
Hpy188III TCNNGA 3 cut(s) 242, 294, 353
HpyCH4III ACNGT 2 cut(s) 282, 300
HpyCH4V TGCA 3 cut(s) 224, 384, 463
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 4 cut(s) 19, 25, 450, 507
Hsp92II CATG 1 cut(s) 204
Kzo9I GATC 5 cut(s) 83, 217, 314, 433, 477
Lsp1109I GCAGC 1 cut(s) 396
MaeI CTAG 3 cut(s) 143, 248, 294
MaeIII GTNAC 2 cut(s) 172, 391
MalI GATC 5 cut(s) 85, 219, 316, 435, 479
MboI GATC 5 cut(s) 83, 217, 314, 433, 477
MboII GAAGA 1 cut(s) 217
MfeI CAATTG 1 cut(s) 379
MflI RGATCY 4 cut(s) 83, 217, 314, 477
MluCI AATT 4 cut(s) 88, 156, 336, 379
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 3 cut(s) 16, 28, 354
Mph1103I ATGCAT 1 cut(s) 465
MseI TTAA 3 cut(s) 74, 366, 429
MslI CAYNNNNRTG 1 cut(s) 499
MspCI CTTAAG 1 cut(s) 73
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 215, 228
MunI CAATTG 1 cut(s) 379
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 109
NciI CCSGG 1 cut(s) 228
NdeII GATC 5 cut(s) 83, 217, 314, 433, 477
NheI GCTAGC 1 cut(s) 142
NlaIII CATG 1 cut(s) 204
NlaIV GGNNCC 2 cut(s) 85, 219
NsiI ATGCAT 1 cut(s) 465
OliI CACNNNNGTG 1 cut(s) 499
PfeI GAWTC 2 cut(s) 162, 349
PkrI GCNGC 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 2 cut(s) 85, 219
PspPI GGNCC 1 cut(s) 306
PsuI RGATCY 4 cut(s) 83, 217, 314, 477
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
RseI CAYNNNNRTG 1 cut(s) 499
SaqAI TTAA 3 cut(s) 74, 366, 429
SatI GCNGC 1 cut(s) 385
Sau3AI GATC 5 cut(s) 83, 217, 314, 433, 477
Sau96I GGNCC 1 cut(s) 306
ScaI AGTACT 1 cut(s) 302
ScrFI CCNGG 2 cut(s) 215, 228
SinI GGWCC 1 cut(s) 306
SmiMI CAYNNNNRTG 1 cut(s) 499
SmlI CTYRAG 2 cut(s) 73, 242
SmoI CTYRAG 2 cut(s) 73, 242
Sse9I AATT 4 cut(s) 88, 156, 336, 379
SspMI CTAG 3 cut(s) 143, 248, 294
StyD4I CCNGG 2 cut(s) 213, 226
TaaI ACNGT 2 cut(s) 282, 300
TaqI TCGA 1 cut(s) 334
TasI AATT 4 cut(s) 88, 156, 336, 379
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 2 cut(s) 162, 349
Tru1I TTAA 3 cut(s) 74, 366, 429
Tru9I TTAA 3 cut(s) 74, 366, 429
TscAI CASTG 1 cut(s) 316
TseI GCWGC 1 cut(s) 384
TspDTI ATGAA 2 cut(s) 81, 189
TspRI CASTG 1 cut(s) 316
Vha464I CTTAAG 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 306
XapI RAATTY 1 cut(s) 336
XbaI TCTAGA 1 cut(s) 293
XcmI CCANNNNNNNNNTGG 1 cut(s) 135
XspI CTAG 3 cut(s) 143, 248, 294
ZrmI AGTACT 1 cut(s) 302
Zsp2I ATGCAT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.