Rroxscaffold_2G00089500

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000564
Physical Location & Seq
Reverse (-)
11475630 .. 11478903
3274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089500.1

Sequence Viewer

Length: 2481 bp
ATGAAGTCCATGGTTTATGTTATTTTGTTATGCCTAAATCTCAAAACTCATATCTCTCTTGCAGCTGACACCATCACTATAAATCAATCTCTCTCTGGTGATCAGACCATTGTTTCAGCAGGTGGTGTTTTTGAACTGGGTTTCTTCAATCCAGGTAACTCAAAGTACTATATAGGCATTTGGCACAGGAGAAGTCCAGGAAACGTTGTCTGGGTGGCAAATAGGGAGCAACCGGTCCCCGACACATCTTCATCAGGATTGAGGATCTCAGATGGTAATTTGGTTCTGTTGAATGAGTCCAAAAGTCCAATTTGGTCCACAAATGTGTCCTCCACCTCAGGTACGTCTGTTCGCGCAGTTCTTTTAGATAATGGGAACCTCGTTTTAAGAGCTGGGTCTAATTATTCATCCCAGCCTTCATGGCAGAGTTTTGATCACCCAACTCATGTTATGCTACCAGAAAGTAGAATTGGGTTCAGTTCTATTACTAAACAAAGACAAATTTTGACTTCATGGAAGAGTTCAGAGGATCCTTCACCAGGTCTCTACTCTCTTGAGCTAGACCCAAATGGAACCAACTCATACATCCTGCTGTGGAATAGGTCCAGACAGTATTGGACCAGTGGACCTTGGGATGAAAAGATTCAGAAATTCAGTTTGATTCCTGAGATGAGGCTTAATTACATCTACAATTTCAGCTATGTGACAAACAAAAACGAAAGCTACTTCACCTATTCTCTTTATGATCCTACAATCTTGTCTAGATCTCTGATCGATGTCTCGGGGCAGGTTAAGCAACTGTCATGGTTGAGATCTTCCATAGACTGGAATTTGTTTTGGTCGCAACCAAGGAAACAATGTGAGGTTTATGCTTATTGTGGGGCATTTGGCAGTTGCGATGAGAGCTCTTTGCCCTTCTGTAATTGTTTGAATGGTTTTGAGCCGAAATCGAAGGTGGAATGGGATTTGCAGGATTATTCTGGTGGGTGTTCAAGAAGAAACCGTCTGTATTCTGGGAATGCTATTAGTGATAATGCAGAAAAAGACCGATTTCTAGACATGCCTAGCATGTCATTACCTGAAAATAAAGAGTCTGTAGATGCTGTGAGTATTGTGCAATGTGAATCAATCTGCTTAAATAACCGCTCTTGCACTGCTTATGCTTATGACAGCAATGGATGTTCAATTTGGATCGGAGATCTCTTTAATCTGCAACAACTCGCAGGAGATGACAATAATGGAACAACATTGTACCTCAGACTTGCAGCTTCCGAGTTCAAGAATCTTAAGAGTGCCAAGAGTCCTGCTAATAAGCGGTCCCTCGTAATTGCAACAGTCTTAGCAACAGCAGGATTGCTCACAGTAATTGTTGGCTGCATCTTATGGAAGAAAACTTTAGGAAAGAGAAGGGAGCGTAGGAGGAAGTACGATGAGACTATAAGTAATGTTGGTGCAAAGAACGATGCAGAACTACCAGTCTATACTTTAAAGAGTATATTAGTTGCTACAAACAACTTCTCTGAAACTAATAAACTGGGAGAGGGAGGATTTGGCCCTGTTTATAAGGGTATTTTAACTGAAAGTCAGGAAGTAGCCATAAAAAGGCTATCAAAAAAGTCTGGGCAAGGACATCAGGAGTTCATGAATGAGTTGAAACTCATAGCCAAGCTCCAACACACCAATCTTGTTAGGCTCTTGGGTTGCTGTATTGAAGAGGGGGAAATGATACTGATCTACGAGTACATGCCTAATCGAAGTCTTGACAAATTCTTGTTTGATGCATCTGAACAAACAAATTTGGACTGGGATAAACGCTTTCAAATTATAGAGGGTGTTGCTCAAGGAGTTTTATATATCCACAAATACTCTAGACTGAAAATAATTCACAGAGACTTAAAAGCAAGTAATGTTCTGTTGGATGAAACAATGAAGCCCAAAATTTCTGACTTTGGAATGGCAAGGATCTTCGGAATAAATCAAACTGAAGCAAATACCAACCGGGTTGTTGGGACATATGGATACATGGCACCAGAATATGGACTTTATGGCCAATTTTCTGAGAAGTCAGATGTATTTAGCTATGGGGTGTTGTTGCTAGAGATTGTGAGCGGAAAGAGGAGTGGTAGTTTTTACCATGTTGAACAAGTAGTCACTCTTGCTGGATGGGCATGGGAATTATGGAAAGAAGGTAAAGGAATGGAGGTGATTGATGCATCCATAAGGGAAACATGTCGGCCTCATGAAGCTTTAAGGTGCATCCATGTTGGTTTCTTGTGTCTTCAACAGTCTCCTGCTGATCGACCGACTATGTCTTCGGTAATTCATATGCTGCAAGCCAGTGATGCAACATCACTTCCACCCGCTAAAGAACCTGCTTTTTCTACTGATATTAGGAATTCTAGTGCCCGTGGTTCTTCCTCTGAAACATCTACCAGATTTTCCAACAATGAAGTCACCATTAGTTTGCCAGGAGCTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

826

Amino Acids

92.44

Weight (kDa)

7.98

Isoelectric Point (pI)

50.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 69 - 173 4.5e-32 D-mannose binding lectin
S_locus_glycop PF00954 206 - 317 3.8e-31 S-locus glycoprotein domain
PAN_2 PF08276 347 - 403 3.7e-14 PAN-like domain
Pkinase PF00069 507 - 775 6.5e-48 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 509 - 776 3.5e-52 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa Rorug01G0022300 Rorug04G0061600
rosa_samantha Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1563
AarI CACCTGC 1 cut(s) 110
Acc36I ACCTGC 3 cut(s) 110, 778, 2380
AccB1I GGYRCC 1 cut(s) 2026
AccB7I CCANNNNNTGG 2 cut(s) 825, 2036
AccBSI CCGCTC 2 cut(s) 1146, 2109
AccII CGCG 1 cut(s) 354
AciI CCGC 4 cut(s) 1144, 1315, 2109, 2361
AclI AACGTT 1 cut(s) 204
AclWI GGATC 6 cut(s) 272, 524, 537, 740, 1199, 1970
AcoI YGGCCR 1 cut(s) 2047
AcsI RAATTY 7 cut(s) 501, 650, 829, 1766, 1795, 1938, 2395
AcuI CTGAAG 1 cut(s) 2004
AfaI GTAC 5 cut(s) 167, 343, 1253, 1427, 1742
AfiI CCNNNNNNNGG 4 cut(s) 539, 825, 1602, 2036
AflII CTTAAG 1 cut(s) 1286
AflIII ACRYGT 1 cut(s) 2228
AgeI ACCGGT 1 cut(s) 232
AjnI CCWGG 4 cut(s) 151, 196, 538, 2467
AjuI GAANNNNNNNTTGG 2 cut(s) 453, 485
AleI CACNNNNGTG 1 cut(s) 323
Alw21I GWGCWC 2 cut(s) 908, 2476
Alw26I GTCTC 5 cut(s) 548, 784, 1427, 1884, 2292
AlwI GGATC 6 cut(s) 272, 524, 537, 740, 1199, 1970
Ama87I CYCGRG 1 cut(s) 781
AoxI GGCC 3 cut(s) 1552, 2047, 2234
ApeKI GCWGC 4 cut(s) 62, 1265, 1374, 2329
ApoI RAATTY 7 cut(s) 501, 650, 829, 1766, 1795, 1938, 2395
ArsI GACNNNNNNTTYG 2 cut(s) 2296, 2328
AsiGI ACCGGT 1 cut(s) 232
Asp700I GAANNNNTTC 1 cut(s) 642
AspLEI GCGC 1 cut(s) 356
AspS9I GGNCC 7 cut(s) 235, 315, 603, 618, 626, 1317, 1553
AsuC2I CCSGG 1 cut(s) 2000
AsuHPI GGTGA 6 cut(s) 110, 428, 528, 721, 2215, 2446
AvaI CYCGRG 1 cut(s) 781
AvaII GGWCC 6 cut(s) 235, 315, 603, 618, 626, 1317
AxyI CCTNAGG 1 cut(s) 337
BaeGI GKGCMC 1 cut(s) 2407
BaeI ACNNNNGTAYC 2 cut(s) 333, 366
BalI TGGCCA 1 cut(s) 2049
BamHI GGATCC 1 cut(s) 529
BanI GGYRCC 1 cut(s) 2026
BanII GRGCYC 2 cut(s) 908, 2476
BbsI GAAGAC 2 cut(s) 2270, 2304
Bbv12I GWGCWC 2 cut(s) 908, 2476
BbvI GCAGC 4 cut(s) 74, 1277, 1361, 2316
BccI CCATC 3 cut(s) 80, 266, 2157
BciT130I CCWGG 4 cut(s) 153, 198, 540, 2469
BciVI GTATCC 1 cut(s) 2012
BclI TGATCA 2 cut(s) 100, 433
BcnI CCSGG 1 cut(s) 2000
BcoDI GTCTC 5 cut(s) 548, 784, 1427, 1884, 2292
BfaI CTAG 7 cut(s) 560, 762, 1055, 1065, 1869, 2096, 2400
BfmI CTRYAG 1 cut(s) 1095
BfrI CTTAAG 1 cut(s) 1286
BfuAI ACCTGC 3 cut(s) 110, 778, 2380
BfuI GTATCC 1 cut(s) 2012
BglI GCCNNNNNGGC 1 cut(s) 421
BglII AGATCT 3 cut(s) 764, 812, 1198
BisI GCNGC 4 cut(s) 63, 1266, 1375, 2330
BlsI GCNGC 4 cut(s) 64, 1267, 1376, 2331
BmcAI AGTACT 1 cut(s) 167
Bme1390I CCNGG 5 cut(s) 153, 198, 540, 2000, 2469
Bme18I GGWCC 6 cut(s) 235, 315, 603, 618, 626, 1317
BmeT110I CYCGRG 1 cut(s) 781
BmgT120I GGNCC 7 cut(s) 235, 315, 603, 618, 626, 1317, 1553
BmiI GGNNCC 6 cut(s) 237, 377, 531, 574, 1319, 2028
BmrFI CCNGG 5 cut(s) 153, 198, 540, 2000, 2469
BmrI ACTGGG 3 cut(s) 146, 1544, 1813
BmsI GCATC 9 cut(s) 1090, 1386, 1453, 1768, 1790, 2200, 2222, 2265, 2332
BmuI ACTGGG 3 cut(s) 146, 1544, 1813
BpiI GAAGAC 2 cut(s) 2270, 2304
BpuEI CTTGAG 2 cut(s) 575, 1824
BpuMI CCSGG 1 cut(s) 2000
Bsa29I ATCGAT 1 cut(s) 774
BsaBI GATNNNNATC 1 cut(s) 1730
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 4 cut(s) 9, 629, 848, 2407
BsaWI WCCGGW 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 2110, 2140
Bsc4I CCNNNNNNNGG 4 cut(s) 539, 825, 1602, 2036
Bse118I RCCGGY 1 cut(s) 232
Bse1I ACTGG 7 cut(s) 141, 621, 830, 1475, 1539, 1808, 2337
Bse21I CCTNAGG 1 cut(s) 337
Bse3DI GCAATG 2 cut(s) 1124, 1180
Bse8I GATNNNNATC 1 cut(s) 1730
BseBI CCWGG 4 cut(s) 153, 198, 540, 2469
BseCI ATCGAT 1 cut(s) 774
BseDI CCNNGG 4 cut(s) 9, 629, 848, 2407
BseGI GGATG 8 cut(s) 407, 585, 640, 1184, 1924, 2168, 2213, 2256
BseJI GATNNNNATC 1 cut(s) 1730
BseLI CCNNNNNNNGG 4 cut(s) 539, 825, 1602, 2036
BseMI GCAATG 2 cut(s) 1124, 1180
BseMII CTCAG 5 cut(s) 282, 351, 657, 1270, 2049
BseNI ACTGG 7 cut(s) 141, 621, 830, 1475, 1539, 1808, 2337
BseRI GAGGAG 1 cut(s) 2131
BseSI GKGCMC 1 cut(s) 2407
BseXI GCAGC 4 cut(s) 74, 1277, 1361, 2316
BseYI CCCAGC 2 cut(s) 392, 411
Bsh1236I CGCG 1 cut(s) 354
Bsh1285I CGRYCG 1 cut(s) 2303
BshFI GGCC 3 cut(s) 1554, 2049, 2236
BshNI GGYRCC 1 cut(s) 2026
BshTI ACCGGT 1 cut(s) 232
BshVI ATCGAT 1 cut(s) 774
BsiEI CGRYCG 1 cut(s) 2303
BsiHKAI GWGCWC 2 cut(s) 908, 2476
BsiHKCI CYCGRG 1 cut(s) 781
BsiSI CCGG 2 cut(s) 233, 1999
BslFI GGGAC 3 cut(s) 221, 1303, 2023
BslI CCNNNNNNNGG 4 cut(s) 539, 825, 1602, 2036
BsmAI GTCTC 5 cut(s) 548, 784, 1427, 1884, 2292
BsmFI GGGAC 3 cut(s) 221, 1303, 2023
BsmI GAATGC 1 cut(s) 1024
BsnI GGCC 3 cut(s) 1554, 2049, 2236
Bso31I GGTCTC 1 cut(s) 548
BsoBI CYCGRG 1 cut(s) 781
Bsp1286I GDGCHC 3 cut(s) 908, 2407, 2476
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 4 cut(s) 1144, 1315, 2109, 2361
BspANI GGCC 3 cut(s) 1554, 2049, 2236
BspCNI CTCAG 5 cut(s) 281, 350, 658, 1269, 2050
BspDI ATCGAT 1 cut(s) 774
BspFNI CGCG 1 cut(s) 354
BspHI TCATGA 2 cut(s) 1641, 2239
BspLI GGNNCC 6 cut(s) 237, 377, 531, 574, 1319, 2028
BspMI ACCTGC 3 cut(s) 110, 778, 2380
BspPI GGATC 6 cut(s) 272, 524, 537, 740, 1199, 1970
BspT107I GGYRCC 1 cut(s) 2026
BspTI CTTAAG 1 cut(s) 1286
BspTNI GGTCTC 1 cut(s) 548
BsrBI CCGCTC 2 cut(s) 1146, 2109
BsrDI GCAATG 2 cut(s) 1124, 1180
BsrFI RCCGGY 1 cut(s) 232
BsrI ACTGG 7 cut(s) 141, 621, 830, 1475, 1539, 1808, 2337
BssAI RCCGGY 1 cut(s) 232
BssECI CCNNGG 4 cut(s) 9, 629, 848, 2407
BssT1I CCWWGG 3 cut(s) 9, 629, 848
Bst2UI CCWGG 4 cut(s) 153, 198, 540, 2469
Bst4CI ACNGT 6 cut(s) 612, 801, 1004, 1336, 1363, 2286
Bst6I CTCTTC 2 cut(s) 512, 1707
BstAFI CTTAAG 1 cut(s) 1286
BstC8I GCNNGC 1 cut(s) 2334
BstDEI CTNAG 6 cut(s) 268, 337, 666, 1256, 1339, 2058
BstDSI CCRYGG 2 cut(s) 9, 2407
BstENI CCTNNNNNAGG 1 cut(s) 537
BstF5I GGATG 8 cut(s) 407, 585, 640, 1184, 1924, 2168, 2213, 2256
BstFNI CGCG 1 cut(s) 354
BstHHI GCGC 1 cut(s) 356
BstMAI GTCTC 5 cut(s) 548, 784, 1427, 1884, 2292
BstMCI CGRYCG 1 cut(s) 2303
BstMWI GCNNNNNNNGC 5 cut(s) 421, 793, 903, 2165, 2342
BstNI CCWGG 4 cut(s) 153, 198, 540, 2469
BstNSI RCATGY 4 cut(s) 1063, 1072, 1747, 2232
BstSCI CCNGG 5 cut(s) 151, 196, 538, 1998, 2467
BstSFI CTRYAG 1 cut(s) 1095
BstSLI GKGCMC 1 cut(s) 2407
BstUI CGCG 1 cut(s) 354
BstV1I GCAGC 4 cut(s) 74, 1277, 1361, 2316
BstV2I GAAGAC 2 cut(s) 2270, 2304
BstX2I RGATCY 6 cut(s) 264, 529, 764, 812, 1198, 1962
BstYI RGATCY 6 cut(s) 264, 529, 764, 812, 1198, 1962
Bsu15I ATCGAT 1 cut(s) 774
Bsu36I CCTNAGG 1 cut(s) 337
BsuI GTATCC 1 cut(s) 2012
BsuRI GGCC 3 cut(s) 1554, 2049, 2236
BsuTUI ATCGAT 1 cut(s) 774
BtgI CCRYGG 2 cut(s) 9, 2407
BtgZI GCGATG 1 cut(s) 912
BtsCI GGATG 8 cut(s) 407, 585, 640, 1184, 1924, 2168, 2213, 2256
BtsI GCAGTG 1 cut(s) 1152
BtsIMutI CAGTG 3 cut(s) 628, 1152, 2344
BveI ACCTGC 3 cut(s) 110, 778, 2380
Cac8I GCNNGC 1 cut(s) 2334
CciI TCATGA 2 cut(s) 1641, 2239
CfoI GCGC 1 cut(s) 356
Cfr10I RCCGGY 1 cut(s) 232
Cfr13I GGNCC 7 cut(s) 235, 315, 603, 618, 626, 1317, 1553
ClaI ATCGAT 1 cut(s) 774
CsiI ACCWGGT 1 cut(s) 538
Csp6I GTAC 5 cut(s) 166, 342, 1252, 1426, 1741
CspAI ACCGGT 1 cut(s) 232
CviQI GTAC 5 cut(s) 166, 342, 1252, 1426, 1741
DdeI CTNAG 6 cut(s) 268, 337, 666, 1256, 1339, 2058
DraI TTTAAA 1 cut(s) 1488
EaeI YGGCCR 1 cut(s) 2047
Eam1104I CTCTTC 2 cut(s) 512, 1707
EarI CTCTTC 2 cut(s) 512, 1707
Ecl136II GAGCTC 2 cut(s) 906, 2474
Eco130I CCWWGG 3 cut(s) 9, 629, 848
Eco24I GRGCYC 2 cut(s) 908, 2476
Eco31I GGTCTC 1 cut(s) 548
Eco47I GGWCC 6 cut(s) 235, 315, 603, 618, 626, 1317
Eco53kI GAGCTC 2 cut(s) 906, 2474
Eco57I CTGAAG 1 cut(s) 2004
Eco81I CCTNAGG 1 cut(s) 337
Eco88I CYCGRG 1 cut(s) 781
EcoICRI GAGCTC 2 cut(s) 906, 2474
EcoNI CCTNNNNNAGG 1 cut(s) 537
EcoRI GAATTC 1 cut(s) 2395
EcoRII CCWGG 4 cut(s) 151, 196, 538, 2467
EcoT14I CCWWGG 3 cut(s) 9, 629, 848
EcoT22I ATGCAT 2 cut(s) 1783, 2215
EcoT38I GRGCYC 2 cut(s) 908, 2476
ErhI CCWWGG 3 cut(s) 9, 629, 848
FaqI GGGAC 3 cut(s) 221, 1303, 2023
FauI CCCGC 1 cut(s) 2368
FauNDI CATATG 2 cut(s) 2014, 2325
FbaI TGATCA 2 cut(s) 100, 433
Fnu4HI GCNGC 4 cut(s) 63, 1266, 1375, 2330
FokI GGATG 8 cut(s) 394, 572, 647, 1191, 1931, 2175, 2200, 2243
FriOI GRGCYC 2 cut(s) 908, 2476
Fsp4HI GCNGC 4 cut(s) 63, 1266, 1375, 2330
FspBI CTAG 7 cut(s) 560, 762, 1055, 1065, 1869, 2096, 2400
GlaI GCGC 1 cut(s) 355
GluI GCNGC 4 cut(s) 63, 1266, 1375, 2330
GsaI CCCAGC 2 cut(s) 396, 415
HaeIII GGCC 3 cut(s) 1554, 2049, 2236
HapII CCGG 2 cut(s) 233, 1999
HhaI GCGC 1 cut(s) 356
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HindIII AAGCTT 1 cut(s) 2244
HinfI GANTC 7 cut(s) 296, 643, 661, 1091, 1124, 1282, 1300
HpaII CCGG 2 cut(s) 233, 1999
HphI GGTGA 6 cut(s) 110, 428, 528, 721, 2215, 2446
Hpy166II GTNNAC 2 cut(s) 318, 626
Hpy8I GTNNAC 2 cut(s) 318, 626
HpyAV CCTTC 6 cut(s) 426, 543, 925, 946, 1401, 2180
HpyCH4III ACNGT 6 cut(s) 612, 801, 1004, 1336, 1363, 2286
HpyCH4IV ACGT 2 cut(s) 204, 344
HpyF10VI GCNNNNNNNGC 5 cut(s) 421, 793, 903, 2165, 2342
HpyF3I CTNAG 6 cut(s) 268, 337, 666, 1256, 1339, 2058
HpySE526I ACGT 2 cut(s) 204, 344
HspAI GCGC 1 cut(s) 354
Ksp22I TGATCA 2 cut(s) 100, 433
LmnI GCTCC 4 cut(s) 226, 1411, 1674, 2471
Lsp1109I GCAGC 4 cut(s) 74, 1277, 1361, 2316
LweI GCATC 9 cut(s) 1090, 1386, 1453, 1768, 1790, 2200, 2222, 2265, 2332
MabI ACCWGGT 1 cut(s) 538
MaeI CTAG 7 cut(s) 560, 762, 1055, 1065, 1869, 2096, 2400
MaeII ACGT 2 cut(s) 204, 344
MaeIII GTNAC 4 cut(s) 155, 703, 2149, 2452
MbiI CCGCTC 2 cut(s) 1146, 2109
MflI RGATCY 6 cut(s) 264, 529, 764, 812, 1198, 1962
MhlI GDGCHC 3 cut(s) 908, 2407, 2476
MlsI TGGCCA 1 cut(s) 2049
MluNI TGGCCA 1 cut(s) 2049
MlyI GAGTC 3 cut(s) 305, 1100, 1309
MmeI TCCRAC 3 cut(s) 1696, 1896, 2466
Mox20I TGGCCA 1 cut(s) 2049
Mph1103I ATGCAT 2 cut(s) 1783, 2215
MroXI GAANNNNTTC 1 cut(s) 642
MscI TGGCCA 1 cut(s) 2049
MslI CAYNNNNRTG 1 cut(s) 323
Msp20I TGGCCA 1 cut(s) 2049
MspA1I CMGCKG 1 cut(s) 65
MspCI CTTAAG 1 cut(s) 1286
MspI CCGG 2 cut(s) 233, 1999
MspR9I CCNGG 5 cut(s) 153, 198, 540, 2000, 2469
Mva1269I GAATGC 1 cut(s) 1024
MvaI CCWGG 4 cut(s) 153, 198, 540, 2469
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 5 cut(s) 421, 793, 903, 2165, 2342
NciI CCSGG 1 cut(s) 2000
NcoI CCATGG 1 cut(s) 9
NdeI CATATG 2 cut(s) 2014, 2325
NlaIV GGNNCC 6 cut(s) 237, 377, 531, 574, 1319, 2028
NmuCI GTSAC 3 cut(s) 703, 2149, 2452
NsiI ATGCAT 2 cut(s) 1783, 2215
NspI RCATGY 4 cut(s) 1063, 1072, 1747, 2232
OliI CACNNNNGTG 1 cut(s) 323
PagI TCATGA 2 cut(s) 1641, 2239
PaqCI CACCTGC 1 cut(s) 110
PciI ACATGT 1 cut(s) 2228
PctI GAATGC 1 cut(s) 1024
PdmI GAANNNNTTC 1 cut(s) 642
PfeI GAWTC 4 cut(s) 643, 661, 1124, 1282
PflFI GACNNNGTC 1 cut(s) 2308
PflMI CCANNNNNTGG 2 cut(s) 825, 2036
PfoI TCCNGGA 1 cut(s) 196
PinAI ACCGGT 1 cut(s) 232
PkrI GCNGC 4 cut(s) 64, 1267, 1376, 2331
PleI GAGTC 3 cut(s) 304, 1099, 1308
PpsI GAGTC 3 cut(s) 304, 1099, 1308
PscI ACATGT 1 cut(s) 2228
PsiI TTATAA 1 cut(s) 1563
Psp124BI GAGCTC 2 cut(s) 908, 2476
Psp1406I AACGTT 1 cut(s) 204
Psp6I CCWGG 4 cut(s) 151, 196, 538, 2467
PspFI CCCAGC 2 cut(s) 392, 411
PspGI CCWGG 4 cut(s) 151, 196, 538, 2467
PspN4I GGNNCC 6 cut(s) 237, 377, 531, 574, 1319, 2028
PspPI GGNCC 7 cut(s) 235, 315, 603, 618, 626, 1317, 1553
PsuI RGATCY 6 cut(s) 264, 529, 764, 812, 1198, 1962
PsyI GACNNNGTC 1 cut(s) 2308
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 5 cut(s) 167, 343, 1253, 1427, 1742
RsaNI GTAC 5 cut(s) 166, 342, 1252, 1426, 1741
RseI CAYNNNNRTG 1 cut(s) 323
SacI GAGCTC 2 cut(s) 908, 2476
SatI GCNGC 4 cut(s) 63, 1266, 1375, 2330
Sau96I GGNCC 7 cut(s) 235, 315, 603, 618, 626, 1317, 1553
ScaI AGTACT 1 cut(s) 167
SchI GAGTC 3 cut(s) 305, 1100, 1309
ScrFI CCNGG 5 cut(s) 153, 198, 540, 2000, 2469
SduI GDGCHC 3 cut(s) 908, 2407, 2476
SexAI ACCWGGT 1 cut(s) 538
SfaNI GCATC 9 cut(s) 1090, 1386, 1453, 1768, 1790, 2200, 2222, 2265, 2332
SfcI CTRYAG 1 cut(s) 1095
SinI GGWCC 6 cut(s) 235, 315, 603, 618, 626, 1317
SmiMI CAYNNNNRTG 1 cut(s) 323
SmlI CTYRAG 3 cut(s) 554, 1286, 1839
SmoI CTYRAG 3 cut(s) 554, 1286, 1839
SsiI CCGC 4 cut(s) 1144, 1315, 2109, 2361
SspMI CTAG 7 cut(s) 560, 762, 1055, 1065, 1869, 2096, 2400
SstI GAGCTC 2 cut(s) 908, 2476
StyD4I CCNGG 5 cut(s) 151, 196, 538, 1998, 2467
StyI CCWWGG 3 cut(s) 9, 629, 848
TaaI ACNGT 6 cut(s) 612, 801, 1004, 1336, 1363, 2286
TaiI ACGT 2 cut(s) 207, 347
TaqI TCGA 4 cut(s) 774, 950, 1753, 2299
TaqII GACCGA 2 cut(s) 1062, 2317
TatI WGTACW 2 cut(s) 165, 1740
TfiI GAWTC 4 cut(s) 643, 661, 1124, 1282
TscAI CASTG 3 cut(s) 628, 1159, 2344
TseFI GTSAC 3 cut(s) 703, 2149, 2452
TseI GCWGC 4 cut(s) 62, 1265, 1374, 2329
Tsp45I GTSAC 3 cut(s) 703, 2149, 2452
TspRI CASTG 3 cut(s) 628, 1159, 2344
Tth111I GACNNNGTC 1 cut(s) 2308
Van91I CCANNNNNTGG 2 cut(s) 825, 2036
Vha464I CTTAAG 1 cut(s) 1286
VpaK11BI GGWCC 6 cut(s) 235, 315, 603, 618, 626, 1317
XagI CCTNNNNNAGG 1 cut(s) 537
XapI RAATTY 7 cut(s) 501, 650, 829, 1766, 1795, 1938, 2395
XbaI TCTAGA 3 cut(s) 761, 1054, 1868
XceI RCATGY 4 cut(s) 1063, 1072, 1747, 2232
XmnI GAANNNNTTC 1 cut(s) 642
XspI CTAG 7 cut(s) 560, 762, 1055, 1065, 1869, 2096, 2400
ZrmI AGTACT 1 cut(s) 167
Zsp2I ATGCAT 2 cut(s) 1783, 2215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.