RLG00000030522

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000564
Physical Location & Seq
Reverse (-)
62871874 .. 62875093
3220 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030522

Sequence Viewer

Length: 2193 bp
ATGGCGGTGCAAGTTCACATACAACAAATATATGTTTTTTGCAGCCAATCCATAGATACCAAGAGCAACCCAATTAAGTTAATGCTTTCCCTTTTCTTCTTGTGCCTATATCTCAAGTCCTATATCTACTTTGGAGCTGACACCATAGCAGCAAACCAGTCTCTCTCTGGTGACCAAACAATTGTTTCAGCTGGTGAGAAATTTGAACTGGGTTTCTTCAAGGCAGGTAATACTTCAAACTACTGCATAGGCATGTGGTACTACAAGAAACTAGTACCAGAGCAAACGATAGTCTGGGTGGCCAATAGGGTGCAGCCAGTCTCTGATAGATTTTCTTCAGAGTTGAGAATCTCAGATGGTAATTTGGTACTGTTTAAGTCCAAAACCCCCATTTGGTCCACAGATGTCAGTTCAAGTTCAGCTTCTTCTATACATGTAGTTCTTTTAGATAATGGAAACCTTGTGCTAAGAGCTGGGTCTTTACCTTTATGGCAAAGTTTTGATCAACCAGCCCATACTTACCTACCAGAAAGCAAAATTGGGTTCAACAATGTTACAAAGCGACCTCAAGTCCTGACTTCATGGAAGAATTCTGAGGATCCTTCACCGGGTCAATTCTCTCTTGAGCTAGACCCAACGAGCAAGTCATATATTATAAAGTGGAATAGGTCTCAACAGTATTGGACAAGCGGACTTTGGGATCAAAACAGACATGTGTTCAGTTTGAGTCCCGAGATGAGGCACTATATCTACAATTTCAGCTATGCTACAAACGAAAATGAGAGCTACTTCACCTATTCTCTTTATGATGCTAGCATCACATCTCGAATAATAATGGATGTATCGGGTCAGGTTCAGCAACTGTCTTGGTTGCACTCTCAGGGATGGTACTTGTTTTGGTCTCGACCAAGGAAACAATGTGATGTGTATGGTCTATGTGGGCCATTTAGTAGCTGCAGTGAGAAATCCTTGCCCATCTGTAATTGTTTGAATGGTTATGAACCGAAATTGAAGGTGGGTTGGTATTTGCAGGATTACTCTCTAGGGTGTTCAAGAAAAACCAGGCTGCAGTGTGGAAATGTTACTGGTGTTGATGGGATGAGTGACCAGTTTATAGAAATGTCTAGCAGGCTATCATCCGCAGATATACAGTTTCAGAATTTGACTTATGTTTATAGTATGGAAGACTGTGAATCAATTTGCTTAAATGATTGCAATTGCACTGCTTATGGTTATAGCAGCTCTTCTTCCGAATGCTCAACTTGGAAAGGAGATCTGTGGGCGGATGAAAATGGAAGAACTTTATACATCAGAATACCAGCTTCTGATCCCACAACCGATGTGTTTCTTTTCTCTGCAGGTAGAAAGCGAACCATTGTAATTGCAACAGTCTCAGCAACAGCAGGGTTGCTTACAATAGTTTTTGGCTATTTTTTATGGAAGAATACTTTGGGAAAGAGAAGTGAAACTACAAAGAATCTTAGCGCTGCTTGTGTGGAGAATGATACAGAACTACGACTATTCAGTTTAAGGAGTATATTAGTGGCTACTAATAACTTCTCTGAAGCGATTAAACTAGGAGAGGGAGGATTCGGCCCTGTTTATAAGGTAAGCCTTCCACTATGTGCTTCAATTGCAATCACAATTTTCTTCATGAATATGAATAAGTCCGGGCAAGGACAACAGGAGTTCATGAATGAGTTAAAGCTTATAGCGAGGCTCCAACATACCAACCTTGTCAGACTATTGGGTTGCTGCATTGAAGCAGAGGAAATGATATTGATGTATGAGTACATGCCAAATCGAAGTTTGGACAAATTTTTGTTTGATCCATCCGAAAAGACAAAATTGGATTGGGGTAGACGTTTTAGAATTATAGAAGGCATGGGACCTATGGAAAGAAGGAAGGGGATGGAGGTGATTGATGCATCAATAAGGGAAACATTTTGGGCTCATGAAGCTTTAAGGTGTATCCATGTAGGACTTCTGTGCGTTCAAGAATCTGCAGCTGATCGACCTGCAATGGCGTCAGTAATTCACATGTTGCAGGGAAATGAAGCTACATCTCTTCCACCCACCAAAGAACCTGCTTTTTCAACACAGAAGAATTTCAGTGCTATTGGTTCTTCTTCTCAAAGGTCTACCAATTATTCAAACAATGCACTCACGATTAGTTTGCCAGAAGCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

731

Amino Acids

82.32

Weight (kDa)

7.07

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 96 - 196 2.3e-28 D-mannose binding lectin
S_locus_glycop PF00954 228 - 336 2.8e-27 S-locus glycoprotein domain
PAN_2 PF08276 368 - 426 3.6e-09 PAN-like domain
Pkinase PF00069 523 - 608 2.8e-10 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 525 - 619 2.8e-14 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa Rorug01G0022300 Rorug04G0061600
rosa_samantha Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 656, 1605
Acc36I ACCTGC 4 cut(s) 215, 1349, 2026, 2095
AccI GTMKAC 2 cut(s) 1861, 2141
AciI CCGC 4 cut(s) 5, 690, 1140, 1283
AclWI GGATC 5 cut(s) 593, 606, 708, 1322, 1823
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 5 cut(s) 200, 589, 1159, 1817, 2107
AcuI CTGAAG 2 cut(s) 321, 1584
AcyI GRCGYC 1 cut(s) 2027
AdeI CACNNNGTG 1 cut(s) 1625
AfaI GTAC 5 cut(s) 260, 276, 369, 890, 1793
AfeI AGCGCT 1 cut(s) 1486
AfiI CCNNNNNNNGG 3 cut(s) 393, 608, 738
AflIII ACRYGT 3 cut(s) 433, 712, 2040
AhdI GACNNNNNGTC 1 cut(s) 569
AhlI ACTAGT 1 cut(s) 271
AjnI CCWGG 1 cut(s) 1061
AjuI GAANNNNNNNTTGG 4 cut(s) 522, 554, 1433, 1465
Alw26I GTCTC 5 cut(s) 165, 325, 675, 906, 1396
AlwI GGATC 5 cut(s) 593, 606, 708, 1322, 1823
AlwNI CAGNNNCTG 3 cut(s) 323, 862, 1325
Ama87I CYCGRG 1 cut(s) 731
Aor51HI AGCGCT 1 cut(s) 1486
AoxI GGCC 3 cut(s) 300, 941, 1594
ApeKI GCWGC 9 cut(s) 42, 149, 313, 954, 1066, 1239, 1487, 1755, 2006
ApoI RAATTY 5 cut(s) 200, 589, 1159, 1817, 2107
Asp700I GAANNNNTTC 1 cut(s) 2108
AspLEI GCGC 1 cut(s) 1487
AspS9I GGNCC 4 cut(s) 396, 941, 1595, 1889
AsuC2I CCSGG 2 cut(s) 609, 1672
AsuHPI GGTGA 5 cut(s) 182, 206, 597, 784, 1930
AsuNHI GCTAGC 1 cut(s) 812
AvaI CYCGRG 1 cut(s) 731
AvaII GGWCC 2 cut(s) 396, 1889
BalI TGGCCA 1 cut(s) 302
BamHI GGATCC 1 cut(s) 598
BanII GRGCYC 1 cut(s) 1954
BarI GAAGNNNNNNTAC 2 cut(s) 1453, 1485
BbsI GAAGAC 1 cut(s) 1191
BbvI GCAGC 9 cut(s) 54, 161, 325, 941, 1053, 1251, 1474, 1742, 2018
BccI CCATC 6 cut(s) 350, 879, 983, 1088, 1840, 1906
BcgI CGANNNNNNTGC 2 cut(s) 2158, 2192
BciT130I CCWGG 1 cut(s) 1063
BciVI GTATCC 1 cut(s) 1982
BclI TGATCA 1 cut(s) 502
BcnI CCSGG 2 cut(s) 609, 1672
BcoDI GTCTC 5 cut(s) 165, 325, 675, 906, 1396
BcuI ACTAGT 1 cut(s) 271
BfaI CTAG 6 cut(s) 272, 629, 813, 1043, 1125, 1577
BfmI CTRYAG 4 cut(s) 955, 1067, 1356, 2004
BfoI RGCGCY 1 cut(s) 1488
BfuAI ACCTGC 4 cut(s) 215, 1349, 2026, 2095
BfuI GTATCC 1 cut(s) 1982
BglII AGATCT 1 cut(s) 1273
BisI GCNGC 9 cut(s) 43, 150, 314, 955, 1067, 1240, 1488, 1756, 2007
BlsI GCNGC 9 cut(s) 44, 151, 315, 956, 1068, 1241, 1489, 1757, 2008
Bme1390I CCNGG 3 cut(s) 609, 1063, 1672
Bme18I GGWCC 2 cut(s) 396, 1889
BmeRI GACNNNNNGTC 1 cut(s) 569
BmeT110I CYCGRG 1 cut(s) 731
BmgT120I GGNCC 4 cut(s) 396, 941, 1595, 1889
BmiI GGNNCC 3 cut(s) 600, 1721, 1890
BmrFI CCNGG 3 cut(s) 609, 1063, 1672
BmrI ACTGGG 1 cut(s) 218
BmsI GCATC 4 cut(s) 799, 825, 1915, 1937
BmtI GCTAGC 1 cut(s) 816
BmuI ACTGGG 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 1191
BpuEI CTTGAG 3 cut(s) 98, 552, 644
BpuMI CCSGG 2 cut(s) 609, 1672
BsaHI GRCGYC 1 cut(s) 2027
BsaI GGTCTC 2 cut(s) 675, 906
BsaJI CCNNGG 1 cut(s) 908
Bsc4I CCNNNNNNNGG 3 cut(s) 393, 608, 738
Bse1I ACTGG 5 cut(s) 157, 213, 317, 1090, 1108
Bse3DI GCAATG 1 cut(s) 2028
BseBI CCWGG 1 cut(s) 1063
BseDI CCNNGG 1 cut(s) 908
BseGI GGATG 7 cut(s) 844, 890, 1104, 1136, 1291, 1832, 1917
BseLI CCNNNNNNNGG 3 cut(s) 393, 608, 738
BseMI GCAATG 1 cut(s) 2028
BseMII CTCAG 4 cut(s) 366, 585, 893, 1407
BseNI ACTGG 5 cut(s) 157, 213, 317, 1090, 1108
BseXI GCAGC 9 cut(s) 54, 161, 325, 941, 1053, 1251, 1474, 1742, 2018
BseYI CCCAGC 1 cut(s) 473
BsgI GTGCAG 1 cut(s) 332
BshFI GGCC 3 cut(s) 302, 943, 1596
BsiHKCI CYCGRG 1 cut(s) 731
BsiSI CCGG 2 cut(s) 608, 1671
BslFI GGGAC 2 cut(s) 714, 1902
BslI CCNNNNNNNGG 3 cut(s) 393, 608, 738
BsmAI GTCTC 5 cut(s) 165, 325, 675, 906, 1396
BsmFI GGGAC 2 cut(s) 714, 1902
BsmI GAATGC 1 cut(s) 1259
BsnI GGCC 3 cut(s) 302, 943, 1596
Bso31I GGTCTC 2 cut(s) 675, 906
BsoBI CYCGRG 1 cut(s) 731
Bsp1286I GDGCHC 1 cut(s) 1954
Bsp143I GATC 7 cut(s) 502, 598, 700, 1273, 1327, 1828, 2011
BspACI CCGC 4 cut(s) 5, 690, 1140, 1283
BspANI GGCC 3 cut(s) 302, 943, 1596
BspCNI CTCAG 4 cut(s) 365, 586, 892, 1406
BspHI TCATGA 3 cut(s) 1653, 1692, 1954
BspLI GGNNCC 3 cut(s) 600, 1721, 1890
BspMAI CTGCAG 4 cut(s) 959, 1071, 1360, 2008
BspMI ACCTGC 4 cut(s) 215, 1349, 2026, 2095
BspOI GCTAGC 1 cut(s) 816
BspPI GGATC 5 cut(s) 593, 606, 708, 1322, 1823
BspQI GCTCTTC 1 cut(s) 1249
BspTNI GGTCTC 2 cut(s) 675, 906
BsrDI GCAATG 1 cut(s) 2028
BsrI ACTGG 5 cut(s) 157, 213, 317, 1090, 1108
BssECI CCNNGG 1 cut(s) 908
BssMI GATC 7 cut(s) 502, 598, 700, 1273, 1327, 1828, 2011
BssNI GRCGYC 1 cut(s) 2027
BssT1I CCWWGG 1 cut(s) 908
Bst2UI CCWGG 1 cut(s) 1063
Bst4CI ACNGT 6 cut(s) 372, 678, 864, 1152, 1190, 1390
Bst6I CTCTTC 2 cut(s) 1249, 2073
BstACI GRCGYC 1 cut(s) 2027
BstC8I GCNNGC 2 cut(s) 814, 1130
BstDEI CTNAG 6 cut(s) 352, 467, 594, 879, 1393, 1481
BstEII GGTNACC 1 cut(s) 170
BstF5I GGATG 7 cut(s) 844, 890, 1104, 1136, 1291, 1832, 1917
BstH2I RGCGCY 1 cut(s) 1488
BstHHI GCGC 1 cut(s) 1487
BstKTI GATC 7 cut(s) 505, 601, 703, 1276, 1330, 1831, 2014
BstMAI GTCTC 5 cut(s) 165, 325, 675, 906, 1396
BstMBI GATC 7 cut(s) 502, 598, 700, 1273, 1327, 1828, 2011
BstMWI GCNNNNNNNGC 2 cut(s) 1634, 1958
BstNI CCWGG 1 cut(s) 1063
BstNSI RCATGY 5 cut(s) 256, 437, 716, 1798, 2044
BstPI GGTNACC 1 cut(s) 170
BstSCI CCNGG 3 cut(s) 607, 1061, 1670
BstSFI CTRYAG 4 cut(s) 955, 1067, 1356, 2004
BstV1I GCAGC 9 cut(s) 54, 161, 325, 941, 1053, 1251, 1474, 1742, 2018
BstV2I GAAGAC 1 cut(s) 1191
BstX2I RGATCY 2 cut(s) 598, 1273
BstYI RGATCY 2 cut(s) 598, 1273
BsuI GTATCC 1 cut(s) 1982
BsuRI GGCC 3 cut(s) 302, 943, 1596
BtsCI GGATG 7 cut(s) 844, 890, 1104, 1136, 1291, 1832, 1917
BtsI GCAGTG 3 cut(s) 964, 1076, 1221
BtsIMutI CAGTG 4 cut(s) 964, 1076, 1221, 2119
BveI ACCTGC 4 cut(s) 215, 1349, 2026, 2095
Cac8I GCNNGC 2 cut(s) 814, 1130
CaiI CAGNNNCTG 3 cut(s) 323, 862, 1325
CciI TCATGA 3 cut(s) 1653, 1692, 1954
CfoI GCGC 1 cut(s) 1487
Cfr13I GGNCC 4 cut(s) 396, 941, 1595, 1889
CseI GACGC 1 cut(s) 2016
Csp6I GTAC 5 cut(s) 259, 275, 368, 889, 1792
CviQI GTAC 5 cut(s) 259, 275, 368, 889, 1792
DdeI CTNAG 6 cut(s) 352, 467, 594, 879, 1393, 1481
DpnI GATC 7 cut(s) 504, 600, 702, 1275, 1329, 1830, 2013
DpnII GATC 7 cut(s) 502, 598, 700, 1273, 1327, 1828, 2011
DraIII CACNNNGTG 1 cut(s) 1625
DriI GACNNNNNGTC 1 cut(s) 569
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 2 cut(s) 1249, 2073
Eam1105I GACNNNNNGTC 1 cut(s) 569
EarI CTCTTC 2 cut(s) 1249, 2073
EciI GGCGGA 1 cut(s) 1298
Eco130I CCWWGG 1 cut(s) 908
Eco24I GRGCYC 1 cut(s) 1954
Eco31I GGTCTC 2 cut(s) 675, 906
Eco47I GGWCC 2 cut(s) 396, 1889
Eco47III AGCGCT 1 cut(s) 1486
Eco57I CTGAAG 2 cut(s) 321, 1584
Eco88I CYCGRG 1 cut(s) 731
Eco91I GGTNACC 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 1889
EcoO65I GGTNACC 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 589
EcoRII CCWGG 1 cut(s) 1061
EcoT14I CCWWGG 1 cut(s) 908
EcoT22I ATGCAT 1 cut(s) 1930
EcoT38I GRGCYC 1 cut(s) 1954
ErhI CCWWGG 1 cut(s) 908
FalI AAGNNNNNCTT 2 cut(s) 406, 438
FaqI GGGAC 2 cut(s) 714, 1902
FbaI TGATCA 1 cut(s) 502
FblI GTMKAC 2 cut(s) 1861, 2141
Fnu4HI GCNGC 9 cut(s) 43, 150, 314, 955, 1067, 1240, 1488, 1756, 2007
FokI GGATG 7 cut(s) 851, 897, 1111, 1123, 1298, 1819, 1924
FriOI GRGCYC 1 cut(s) 1954
Fsp4HI GCNGC 9 cut(s) 43, 150, 314, 955, 1067, 1240, 1488, 1756, 2007
FspBI CTAG 6 cut(s) 272, 629, 813, 1043, 1125, 1577
GlaI GCGC 1 cut(s) 1486
GluI GCNGC 9 cut(s) 43, 150, 314, 955, 1067, 1240, 1488, 1756, 2007
GsaI CCCAGC 1 cut(s) 477
HaeII RGCGCY 1 cut(s) 1488
HaeIII GGCC 3 cut(s) 302, 943, 1596
HapII CCGG 2 cut(s) 608, 1671
HgaI GACGC 1 cut(s) 2016
HhaI GCGC 1 cut(s) 1487
Hin1I GRCGYC 1 cut(s) 2027
Hin6I GCGC 1 cut(s) 1485
HinP1I GCGC 1 cut(s) 1485
HindIII AAGCTT 2 cut(s) 1706, 1959
HinfI GANTC 6 cut(s) 348, 727, 1193, 1477, 1590, 2000
HpaII CCGG 2 cut(s) 608, 1671
HphI GGTGA 5 cut(s) 182, 206, 597, 784, 1930
Hpy166II GTNNAC 4 cut(s) 16, 399, 1862, 2142
Hpy8I GTNNAC 4 cut(s) 16, 399, 1862, 2142
HpyAV CCTTC 6 cut(s) 612, 1006, 1625, 1874, 1896, 1900
HpyCH4III ACNGT 6 cut(s) 372, 678, 864, 1152, 1190, 1390
HpyCH4IV ACGT 1 cut(s) 1864
HpyF10VI GCNNNNNNNGC 2 cut(s) 1634, 1958
HpyF3I CTNAG 6 cut(s) 352, 467, 594, 879, 1393, 1481
HpySE526I ACGT 1 cut(s) 1864
Hsp92I GRCGYC 1 cut(s) 2027
HspAI GCGC 1 cut(s) 1485
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 7 cut(s) 502, 598, 700, 1273, 1327, 1828, 2011
LguI GCTCTTC 1 cut(s) 1249
LmnI GCTCC 2 cut(s) 134, 1725
Lsp1109I GCAGC 9 cut(s) 54, 161, 325, 941, 1053, 1251, 1474, 1742, 2018
LweI GCATC 4 cut(s) 799, 825, 1915, 1937
MaeI CTAG 6 cut(s) 272, 629, 813, 1043, 1125, 1577
MaeII ACGT 1 cut(s) 1864
MaeIII GTNAC 4 cut(s) 170, 553, 1081, 1103
MalI GATC 7 cut(s) 504, 600, 702, 1275, 1329, 1830, 2013
MboI GATC 7 cut(s) 502, 598, 700, 1273, 1327, 1828, 2011
MfeI CAATTG 3 cut(s) 180, 1216, 1632
MflI RGATCY 2 cut(s) 598, 1273
MhlI GDGCHC 1 cut(s) 1954
MlsI TGGCCA 1 cut(s) 302
MluNI TGGCCA 1 cut(s) 302
MlyI GAGTC 1 cut(s) 736
MmeI TCCRAC 1 cut(s) 1747
MnlI CCTC 8 cut(s) 576, 589, 732, 1576, 1580, 1710, 1762, 1909
Mox20I TGGCCA 1 cut(s) 302
Mph1103I ATGCAT 1 cut(s) 1930
MroXI GAANNNNTTC 1 cut(s) 2108
MscI TGGCCA 1 cut(s) 302
MseI TTAA 8 cut(s) 75, 80, 375, 1205, 1529, 1572, 1703, 1964
MslI CAYNNNNRTG 2 cut(s) 251, 1658
Msp20I TGGCCA 1 cut(s) 302
MspA1I CMGCKG 2 cut(s) 191, 2009
MspI CCGG 2 cut(s) 608, 1671
MspR9I CCNGG 3 cut(s) 609, 1063, 1672
MunI CAATTG 3 cut(s) 180, 1216, 1632
Mva1269I GAATGC 1 cut(s) 1259
MvaI CCWGG 1 cut(s) 1063
MwoI GCNNNNNNNGC 2 cut(s) 1634, 1958
NciI CCSGG 2 cut(s) 609, 1672
NdeII GATC 7 cut(s) 502, 598, 700, 1273, 1327, 1828, 2011
NheI GCTAGC 1 cut(s) 812
NlaIV GGNNCC 3 cut(s) 600, 1721, 1890
NmuCI GTSAC 2 cut(s) 170, 1103
NsiI ATGCAT 1 cut(s) 1930
NspI RCATGY 5 cut(s) 256, 437, 716, 1798, 2044
PagI TCATGA 3 cut(s) 1653, 1692, 1954
PciI ACATGT 3 cut(s) 433, 712, 2040
PciSI GCTCTTC 1 cut(s) 1249
PctI GAATGC 1 cut(s) 1259
PdmI GAANNNNTTC 1 cut(s) 2108
PfeI GAWTC 5 cut(s) 348, 1193, 1477, 1590, 2000
PkrI GCNGC 9 cut(s) 44, 151, 315, 956, 1068, 1241, 1489, 1757, 2008
PleI GAGTC 1 cut(s) 735
PpsI GAGTC 1 cut(s) 735
PpuMI RGGWCCY 1 cut(s) 1889
PscI ACATGT 3 cut(s) 433, 712, 2040
PsiI TTATAA 2 cut(s) 656, 1605
Psp5II RGGWCCY 1 cut(s) 1889
Psp6I CCWGG 1 cut(s) 1061
PspEI GGTNACC 1 cut(s) 170
PspFI CCCAGC 1 cut(s) 473
PspGI CCWGG 1 cut(s) 1061
PspN4I GGNNCC 3 cut(s) 600, 1721, 1890
PspPI GGNCC 4 cut(s) 396, 941, 1595, 1889
PspPPI RGGWCCY 1 cut(s) 1889
PstI CTGCAG 4 cut(s) 959, 1071, 1360, 2008
PstNI CAGNNNCTG 3 cut(s) 323, 862, 1325
PsuI RGATCY 2 cut(s) 598, 1273
PvuII CAGCTG 2 cut(s) 191, 2009
RsaI GTAC 5 cut(s) 260, 276, 369, 890, 1793
RsaNI GTAC 5 cut(s) 259, 275, 368, 889, 1792
RseI CAYNNNNRTG 2 cut(s) 251, 1658
SapI GCTCTTC 1 cut(s) 1249
SaqAI TTAA 8 cut(s) 75, 80, 375, 1205, 1529, 1572, 1703, 1964
SatI GCNGC 9 cut(s) 43, 150, 314, 955, 1067, 1240, 1488, 1756, 2007
Sau3AI GATC 7 cut(s) 502, 598, 700, 1273, 1327, 1828, 2011
Sau96I GGNCC 4 cut(s) 396, 941, 1595, 1889
SchI GAGTC 1 cut(s) 736
ScrFI CCNGG 3 cut(s) 609, 1063, 1672
SduI GDGCHC 1 cut(s) 1954
SfaNI GCATC 4 cut(s) 799, 825, 1915, 1937
SfcI CTRYAG 4 cut(s) 955, 1067, 1356, 2004
SinI GGWCC 2 cut(s) 396, 1889
SmiMI CAYNNNNRTG 2 cut(s) 251, 1658
SmlI CTYRAG 3 cut(s) 113, 567, 623
SmoI CTYRAG 3 cut(s) 113, 567, 623
SpeI ACTAGT 1 cut(s) 271
SsiI CCGC 4 cut(s) 5, 690, 1140, 1283
SspMI CTAG 6 cut(s) 272, 629, 813, 1043, 1125, 1577
StyD4I CCNGG 3 cut(s) 607, 1061, 1670
StyI CCWWGG 1 cut(s) 908
TaaI ACNGT 6 cut(s) 372, 678, 864, 1152, 1190, 1390
TaiI ACGT 1 cut(s) 1867
TaqI TCGA 5 cut(s) 826, 904, 1804, 2014, 2188
TatI WGTACW 1 cut(s) 1791
TfiI GAWTC 5 cut(s) 348, 1193, 1477, 1590, 2000
Tru1I TTAA 8 cut(s) 75, 80, 375, 1205, 1529, 1572, 1703, 1964
Tru9I TTAA 8 cut(s) 75, 80, 375, 1205, 1529, 1572, 1703, 1964
TscAI CASTG 4 cut(s) 964, 1076, 1228, 2119
TseFI GTSAC 2 cut(s) 170, 1103
TseI GCWGC 9 cut(s) 42, 149, 313, 954, 1066, 1239, 1487, 1755, 2006
Tsp45I GTSAC 2 cut(s) 170, 1103
TspRI CASTG 4 cut(s) 964, 1076, 1228, 2119
VpaK11BI GGWCC 2 cut(s) 396, 1889
XapI RAATTY 5 cut(s) 200, 589, 1159, 1817, 2107
XceI RCATGY 5 cut(s) 256, 437, 716, 1798, 2044
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XmiI GTMKAC 2 cut(s) 1861, 2141
XmnI GAANNNNTTC 1 cut(s) 2108
XspI CTAG 6 cut(s) 272, 629, 813, 1043, 1125, 1577
Zsp2I ATGCAT 1 cut(s) 1930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.