Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000564

Physical Location & Seq

Genomic Coordinates Forward (+)

26364457 .. 26365086

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37716

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGATACATATCTCCCTTGCAGCTGACACCATCACTATAAACCAATCTCTCTCTGGTGATCAGACCATTGTCTCTGAACATGGGGTTTTTGAACTGGGTTTCTTCAAACCAGGTAATAATTCAAATTACTATATAGGCATCTGGTATTACAAGCAAGTTGTGTCTGTGCAAACCATAGTCTGGGTGGCAAATAGGGAACGGTCAATCTCTGATAGATTTTCTTCAGTATTGACGATGTCAGATGGAAATTTAGTACTGTTTAATGAGTCCAAAAGCCCAGTTTGGTCTACAAATCTGTCCTCCACCACCTTAGGCTCTGTGAAAGCAGTTCTTTTAGATGATGGAAACCTTGTCTTAAGAGCTGGGTCCAGTTCATCCCAACCTTTATGGCAAAGCTTTGATCATCCAGCCCATACTTGGCTACCAGGAAGTAAACTAGGATTCAACAATGTTACCAAGCAAACCCAAATGCTCACTTCATGGAAGAATGCGGAGAACCCTGCACCGGGTCCGTTCTCTCTTCAGCTAGACCCAAATGGAAGCAACTCACTTATCATATGGTTGAATTACCTGAATTTGTCTGAACAGTATTGGAGCAGTGAAAATACTAGATGGAACTATTTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

209

Amino Acids

23.42

Weight (kDa)

5.51

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	58 - 162	1.5e-34	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000564)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica	MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica	Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis	pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis	RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata	RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora	Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii	Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa	Rorug01G0022300 Rorug04G0061600
rosa_samantha	Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana	Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccI	GTMKAC	1 cut(s)	287
AciI	CCGC	1 cut(s)	491
AcsI	RAATTY	2 cut(s)	247, 574
AcuI	CTGAAG	2 cut(s)	207, 506
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	4 cut(s)	180, 417, 505, 506
AflII	CTTAAG	1 cut(s)	355
AgsI	TTSAA	5 cut(s)	92, 106, 123, 445, 565
AjnI	CCWGG	2 cut(s)	109, 424
AluBI	AGCT	4 cut(s)	23, 362, 396, 526
AluI	AGCT	4 cut(s)	23, 362, 396, 526
Alw26I	GTCTC	1 cut(s)	76
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	2 cut(s)	247, 574
AspS9I	GGNCC	2 cut(s)	366, 509
AsuC2I	CCSGG	1 cut(s)	507
AsuHPI	GGTGA	1 cut(s)	68
AvaII	GGWCC	2 cut(s)	366, 509
AxyI	CCTNAGG	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	4 cut(s)	38, 236, 335, 606
BciT130I	CCWGG	2 cut(s)	111, 426
BclI	TGATCA	2 cut(s)	58, 400
BcnI	CCSGG	1 cut(s)	507
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	3 cut(s)	437, 527, 609
BfrI	CTTAAG	1 cut(s)	355
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
BmcAI	AGTACT	1 cut(s)	255
Bme1390I	CCNGG	3 cut(s)	111, 426, 507
Bme18I	GGWCC	2 cut(s)	366, 509
BmgT120I	GGNCC	2 cut(s)	366, 509
BmiI	GGNNCC	2 cut(s)	367, 510
BmrFI	CCNGG	3 cut(s)	111, 426, 507
BmrI	ACTGGG	2 cut(s)	104, 272
BmsI	GCATC	1 cut(s)	147
BmuI	ACTGGG	2 cut(s)	104, 272
BoxI	GACNNNNGTC	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	507
BsaBI	GATNNNNATC	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	4 cut(s)	180, 417, 505, 506
Bse1I	ACTGG	3 cut(s)	99, 278, 369
Bse21I	CCTNAGG	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	2 cut(s)	111, 426
BseGI	GGATG	2 cut(s)	374, 403
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	4 cut(s)	180, 417, 505, 506
BseNI	ACTGG	3 cut(s)	99, 278, 369
BseXI	GCAGC	1 cut(s)	32
BseYI	CCCAGC	1 cut(s)	362
BsgI	GTGCAG	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	506
BslI	CCNNNNNNNGG	4 cut(s)	180, 417, 505, 506
BsmAI	GTCTC	1 cut(s)	76
BsmI	GAATGC	1 cut(s)	493
Bsp143I	GATC	2 cut(s)	58, 400
BspACI	CCGC	1 cut(s)	491
BspLI	GGNNCC	2 cut(s)	367, 510
BspTI	CTTAAG	1 cut(s)	355
BsrI	ACTGG	3 cut(s)	99, 278, 369
BssMI	GATC	2 cut(s)	58, 400
Bst2UI	CCWGG	2 cut(s)	111, 426
Bst4CI	ACNGT	3 cut(s)	201, 258, 588
Bst6I	CTCTTC	1 cut(s)	525
BstAFI	CTTAAG	1 cut(s)	355
BstDEI	CTNAG	1 cut(s)	310
BstF5I	GGATG	2 cut(s)	374, 403
BstKTI	GATC	2 cut(s)	61, 403
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	2 cut(s)	58, 400
BstNI	CCWGG	2 cut(s)	111, 426
BstPAI	GACNNNNGTC	1 cut(s)	68
BstSCI	CCNGG	3 cut(s)	109, 424, 505
BstV1I	GCAGC	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	310
BtsCI	GGATG	2 cut(s)	374, 403
BtsI	GCAGTG	1 cut(s)	604
BtsIMutI	CAGTG	1 cut(s)	604
Cfr13I	GGNCC	2 cut(s)	366, 509
CsiI	ACCWGGT	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	2 cut(s)	80, 480
CviJI	RGCY	8 cut(s)	23, 276, 315, 362, 396, 410, 421, 526
CviKI_1	RGCY	8 cut(s)	23, 276, 315, 362, 396, 410, 421, 526
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	1 cut(s)	310
DpnI	GATC	2 cut(s)	60, 402
DpnII	GATC	2 cut(s)	58, 400
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco47I	GGWCC	2 cut(s)	366, 509
Eco57I	CTGAAG	2 cut(s)	207, 506
Eco81I	CCTNAGG	1 cut(s)	310
EcoRII	CCWGG	2 cut(s)	109, 424
FaeI	CATG	2 cut(s)	83, 483
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FatI	CATG	2 cut(s)	79, 479
FauNDI	CATATG	1 cut(s)	557
FbaI	TGATCA	2 cut(s)	58, 400
FblI	GTMKAC	1 cut(s)	287
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	2 cut(s)	361, 390
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	3 cut(s)	437, 527, 609
GluI	GCNGC	1 cut(s)	21
GsaI	CCCAGC	1 cut(s)	366
HapII	CCGG	1 cut(s)	506
Hin1II	CATG	2 cut(s)	83, 483
HindIII	AAGCTT	1 cut(s)	394
HinfI	GANTC	2 cut(s)	266, 441
HpaII	CCGG	1 cut(s)	506
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	288, 434
Hpy188I	TCNGA	5 cut(s)	63, 76, 211, 241, 583
Hpy8I	GTNNAC	2 cut(s)	288, 434
HpyCH4III	ACNGT	3 cut(s)	201, 258, 588
HpyCH4V	TGCA	3 cut(s)	20, 169, 503
HpyF3I	CTNAG	1 cut(s)	310
Hsp92II	CATG	2 cut(s)	83, 483
Ksp22I	TGATCA	2 cut(s)	58, 400
Kzo9I	GATC	2 cut(s)	58, 400
LmnI	GCTCC	1 cut(s)	594
Lsp1109I	GCAGC	1 cut(s)	32
LweI	GCATC	1 cut(s)	147
MabI	ACCWGGT	1 cut(s)	109
MaeI	CTAG	3 cut(s)	437, 527, 609
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	2 cut(s)	60, 402
MboI	GATC	2 cut(s)	58, 400
MboII	GAAGA	4 cut(s)	94, 213, 496, 512
MluCI	AATT	5 cut(s)	118, 124, 247, 565, 574
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	1 cut(s)	310
MseI	TTAA	2 cut(s)	261, 356
MspA1I	CMGCKG	1 cut(s)	23
MspCI	CTTAAG	1 cut(s)	355
MspI	CCGG	1 cut(s)	506
MspR9I	CCNGG	3 cut(s)	111, 426, 507
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	2 cut(s)	111, 426
NciI	CCSGG	1 cut(s)	507
NdeI	CATATG	1 cut(s)	557
NdeII	GATC	2 cut(s)	58, 400
NlaIII	CATG	2 cut(s)	83, 483
NlaIV	GGNNCC	2 cut(s)	367, 510
PctI	GAATGC	1 cut(s)	493
PfeI	GAWTC	1 cut(s)	441
PflFI	GACNNNGTC	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	180
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PshAI	GACNNNNGTC	1 cut(s)	68
Psp6I	CCWGG	2 cut(s)	109, 424
PspFI	CCCAGC	1 cut(s)	362
PspGI	CCWGG	2 cut(s)	109, 424
PspN4I	GGNNCC	2 cut(s)	367, 510
PspPI	GGNCC	2 cut(s)	366, 509
PsyI	GACNNNGTC	1 cut(s)	235
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
SaqAI	TTAA	2 cut(s)	261, 356
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	2 cut(s)	58, 400
Sau96I	GGNCC	2 cut(s)	366, 509
ScaI	AGTACT	1 cut(s)	255
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	3 cut(s)	111, 426, 507
SetI	ASST	9 cut(s)	25, 115, 311, 351, 364, 385, 398, 528, 573
SexAI	ACCWGGT	1 cut(s)	109
SfaNI	GCATC	1 cut(s)	147
SinI	GGWCC	2 cut(s)	366, 509
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
Sse9I	AATT	5 cut(s)	118, 124, 247, 565, 574
SsiI	CCGC	1 cut(s)	491
SspMI	CTAG	3 cut(s)	437, 527, 609
StyD4I	CCNGG	3 cut(s)	109, 424, 505
TaaI	ACNGT	3 cut(s)	201, 258, 588
TasI	AATT	5 cut(s)	118, 124, 247, 565, 574
TatI	WGTACW	1 cut(s)	253
TfiI	GAWTC	1 cut(s)	441
Tru1I	TTAA	2 cut(s)	261, 356
Tru9I	TTAA	2 cut(s)	261, 356
TscAI	CASTG	1 cut(s)	604
TseI	GCWGC	1 cut(s)	20
TspDTI	ATGAA	2 cut(s)	363, 468
TspGWI	ACGGA	1 cut(s)	501
TspRI	CASTG	1 cut(s)	604
Tth111I	GACNNNGTC	1 cut(s)	235
Van91I	CCANNNNNTGG	1 cut(s)	180
Vha464I	CTTAAG	1 cut(s)	355
VpaK11BI	GGWCC	2 cut(s)	366, 509
XapI	RAATTY	2 cut(s)	247, 574
XcmI	CCANNNNNNNNNTGG	3 cut(s)	50, 181, 414
XmiI	GTMKAC	1 cut(s)	287
XspI	CTAG	3 cut(s)	437, 527, 609
ZrmI	AGTACT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.