Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0000564

Physical Location & Seq

Genomic Coordinates Forward (+)

1430602 .. 1431327

Gene Structure 726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g01920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAATACCAAACCAAACTCAAAGTTCGTGTTCTCCGTTATTTTACTATTTGCTTTTCTCGAGTTCCATGTTTCCCTTGCAGCTGACACCATCAGCGAAAACCAATCTCTCTCGGGCGATCAAACCATTGTCTCTGCAGGTGGGATGTTTGAGCTAGGTTTCTTCAAACCAGGTCAGCTTTCAAACTACTATATAGGCATATGGTACTCCAAGCAAGTGGTATCTGAGAGTACCGTTGTTTGGGTAGCAAATAGGGAAATACCAGTATCTGATAGATTTTCTTCGGTGTTGAGCATCTTAGATGGTAATTTAGTTCTCTTGAACATGTCCAAAATCCCGGTTTGGTCAACAGATTTAAACTCCACCACCAGTTCTGGTTCTGTACAAGCAGTTCTTTTGGATAGCGGAATCCTTGTCTTGATAGCAGGCTCTAGTAATAATACATCGGAGCCCTTATGGCAAAGCTTTGATCATCCAACCCATACTTTGCTACCAGGAGGTAAACTTGGATTCAACAAAATTACCAATCATACCCAAATTCTCACTTCATGGAAGAGTTTGGAGGATCCTGCACCAGGTCTTTACTCTTTTAAGCTAGCCCCGGATGAAAGCAATTCGTATATCTTACTGTGGAATAGGTCTAAACAGTATTGGACCAGCGGACCATGGGATGGAAGTTCACATATTTTCAACCTGGTTCCTGAAATGAAGCAATTTAATAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

242

Amino Acids

26.66

Weight (kDa)

5.46

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	78 - 185	2.4e-32	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000564)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica	MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica	Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis	pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis	RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata	RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora	Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii	Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa	Rorug01G0022300 Rorug04G0061600
rosa_samantha	Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana	Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	128
Acc36I	ACCTGC	1 cut(s)	128
AccB7I	CCANNNNNTGG	1 cut(s)	671
AciI	CCGC	2 cut(s)	405, 660
AclWI	GGATC	2 cut(s)	560, 573
AcsI	RAATTY	1 cut(s)	537
AfaI	GTAC	3 cut(s)	206, 232, 384
AfiI	CCNNNNNNNGG	3 cut(s)	240, 575, 671
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	5 cut(s)	166, 183, 322, 514, 691
AjnI	CCWGG	4 cut(s)	169, 493, 574, 693
AluBI	AGCT	5 cut(s)	83, 154, 178, 465, 595
AluI	AGCT	5 cut(s)	83, 154, 178, 465, 595
Alw26I	GTCTC	1 cut(s)	136
AlwI	GGATC	2 cut(s)	560, 573
AlwNI	CAGNNNCTG	1 cut(s)	269
Ama87I	CYCGRG	2 cut(s)	59, 112
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	537
AspS9I	GGNCC	2 cut(s)	654, 662
AsuC2I	CCSGG	2 cut(s)	338, 602
AsuNHI	GCTAGC	1 cut(s)	595
AvaI	CYCGRG	2 cut(s)	59, 112
AvaII	GGWCC	2 cut(s)	654, 662
BamHI	GGATCC	1 cut(s)	565
BanII	GRGCYC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	3 cut(s)	98, 296, 665
BciT130I	CCWGG	4 cut(s)	171, 495, 576, 695
BclI	TGATCA	1 cut(s)	469
BcnI	CCSGG	2 cut(s)	338, 602
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	3 cut(s)	155, 432, 596
BfmI	CTRYAG	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	128
BglI	GCCNNNNNGGC	1 cut(s)	457
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	6 cut(s)	171, 338, 495, 576, 602, 695
Bme18I	GGWCC	2 cut(s)	654, 662
BmeT110I	CYCGRG	2 cut(s)	59, 112
BmgT120I	GGNCC	2 cut(s)	654, 662
BmiI	GGNNCC	3 cut(s)	450, 567, 699
BmrFI	CCNGG	6 cut(s)	171, 338, 495, 576, 602, 695
BmsI	GCATC	1 cut(s)	303
BmtI	GCTAGC	1 cut(s)	599
BpuMI	CCSGG	2 cut(s)	338, 602
BsaJI	CCNNGG	2 cut(s)	600, 665
Bsc4I	CCNNNNNNNGG	3 cut(s)	240, 575, 671
Bse1I	ACTGG	2 cut(s)	263, 369
BseBI	CCWGG	4 cut(s)	171, 495, 576, 695
BseDI	CCNNGG	2 cut(s)	600, 665
BseGI	GGATG	4 cut(s)	150, 472, 610, 676
BseLI	CCNNNNNNNGG	3 cut(s)	240, 575, 671
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	2 cut(s)	263, 369
BseXI	GCAGC	1 cut(s)	92
BsgI	GTGCAG	1 cut(s)	555
BsiHKCI	CYCGRG	2 cut(s)	59, 112
BsiSI	CCGG	2 cut(s)	338, 602
BslI	CCNNNNNNNGG	3 cut(s)	240, 575, 671
BsmAI	GTCTC	1 cut(s)	136
BsoBI	CYCGRG	2 cut(s)	59, 112
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp1407I	TGTACA	1 cut(s)	382
Bsp143I	GATC	3 cut(s)	118, 469, 565
Bsp19I	CCATGG	1 cut(s)	665
BspACI	CCGC	2 cut(s)	405, 660
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	3 cut(s)	450, 567, 699
BspMAI	CTGCAG	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	128
BspOI	GCTAGC	1 cut(s)	599
BspPI	GGATC	2 cut(s)	560, 573
BsrGI	TGTACA	1 cut(s)	382
BsrI	ACTGG	2 cut(s)	263, 369
BssECI	CCNNGG	2 cut(s)	600, 665
BssMI	GATC	3 cut(s)	118, 469, 565
BssT1I	CCWWGG	1 cut(s)	665
Bst2UI	CCWGG	4 cut(s)	171, 495, 576, 695
Bst4CI	ACNGT	3 cut(s)	235, 630, 648
Bst6I	CTCTTC	1 cut(s)	548
BstAUI	TGTACA	1 cut(s)	382
BstC8I	GCNNGC	2 cut(s)	427, 597
BstDEI	CTNAG	2 cut(s)	225, 298
BstDSI	CCRYGG	1 cut(s)	665
BstENI	CCTNNNNNAGG	1 cut(s)	573
BstF5I	GGATG	4 cut(s)	150, 472, 610, 676
BstKTI	GATC	3 cut(s)	121, 472, 568
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	3 cut(s)	118, 469, 565
BstMWI	GCNNNNNNNGC	1 cut(s)	457
BstNI	CCWGG	4 cut(s)	171, 495, 576, 695
BstNSI	RCATGY	1 cut(s)	328
BstSCI	CCNGG	6 cut(s)	169, 336, 493, 574, 600, 693
BstSFI	CTRYAG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	565
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	565
BtgI	CCRYGG	1 cut(s)	665
BtsCI	GGATG	4 cut(s)	150, 472, 610, 676
BveI	ACCTGC	1 cut(s)	128
Cac8I	GCNNGC	2 cut(s)	427, 597
CaiI	CAGNNNCTG	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	654, 662
CsiI	ACCWGGT	3 cut(s)	169, 574, 693
Csp6I	GTAC	3 cut(s)	205, 231, 383
CviAII	CATG	4 cut(s)	68, 325, 549, 666
CviJI	RGCY	8 cut(s)	83, 154, 178, 429, 451, 465, 595, 599
CviKI_1	RGCY	8 cut(s)	83, 154, 178, 429, 451, 465, 595, 599
CviQI	GTAC	3 cut(s)	205, 231, 383
DdeI	CTNAG	2 cut(s)	225, 298
DpnI	GATC	3 cut(s)	120, 471, 567
DpnII	GATC	3 cut(s)	118, 469, 565
DraI	TTTAAA	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	548
EarI	CTCTTC	1 cut(s)	548
Eco130I	CCWWGG	1 cut(s)	665
Eco24I	GRGCYC	1 cut(s)	453
Eco47I	GGWCC	2 cut(s)	654, 662
Eco88I	CYCGRG	2 cut(s)	59, 112
EcoNI	CCTNNNNNAGG	1 cut(s)	573
EcoRII	CCWGG	4 cut(s)	169, 493, 574, 693
EcoT14I	CCWWGG	1 cut(s)	665
EcoT38I	GRGCYC	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	665
FaeI	CATG	4 cut(s)	71, 328, 552, 669
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FatI	CATG	4 cut(s)	67, 324, 548, 665
FauNDI	CATATG	1 cut(s)	200
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	4 cut(s)	157, 459, 617, 683
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	3 cut(s)	155, 432, 596
GluI	GCNGC	1 cut(s)	81
HapII	CCGG	2 cut(s)	338, 602
Hin1II	CATG	4 cut(s)	71, 328, 552, 669
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	2 cut(s)	408, 510
HpaII	CCGG	2 cut(s)	338, 602
Hpy166II	GTNNAC	3 cut(s)	348, 503, 680
Hpy188I	TCNGA	3 cut(s)	226, 271, 448
Hpy188III	TCNNGA	4 cut(s)	59, 319, 418, 701
Hpy8I	GTNNAC	3 cut(s)	348, 503, 680
HpyCH4III	ACNGT	3 cut(s)	235, 630, 648
HpyCH4V	TGCA	3 cut(s)	80, 137, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	457
HpyF3I	CTNAG	2 cut(s)	225, 298
Hsp92II	CATG	4 cut(s)	71, 328, 552, 669
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	3 cut(s)	118, 469, 565
LmnI	GCTCC	1 cut(s)	448
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	1 cut(s)	303
MabI	ACCWGGT	3 cut(s)	169, 574, 693
MaeI	CTAG	3 cut(s)	155, 432, 596
MalI	GATC	3 cut(s)	120, 471, 567
MboI	GATC	3 cut(s)	118, 469, 565
MboII	GAAGA	3 cut(s)	154, 273, 565
MflI	RGATCY	1 cut(s)	565
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	5 cut(s)	307, 519, 537, 613, 713
MmeI	TCCRAC	1 cut(s)	500
MnlI	CCTC	2 cut(s)	491, 556
MseI	TTAA	3 cut(s)	356, 591, 717
MspA1I	CMGCKG	2 cut(s)	83, 660
MspI	CCGG	2 cut(s)	338, 602
MspR9I	CCNGG	6 cut(s)	171, 338, 495, 576, 602, 695
MvaI	CCWGG	4 cut(s)	171, 495, 576, 695
MwoI	GCNNNNNNNGC	1 cut(s)	457
NciI	CCSGG	2 cut(s)	338, 602
NcoI	CCATGG	1 cut(s)	665
NdeI	CATATG	1 cut(s)	200
NdeII	GATC	3 cut(s)	118, 469, 565
NheI	GCTAGC	1 cut(s)	595
NlaIII	CATG	4 cut(s)	71, 328, 552, 669
NlaIV	GGNNCC	3 cut(s)	450, 567, 699
NspI	RCATGY	1 cut(s)	328
PaeR7I	CTCGAG	1 cut(s)	59
PaqCI	CACCTGC	1 cut(s)	128
PciI	ACATGT	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PfeI	GAWTC	2 cut(s)	408, 510
PflMI	CCANNNNNTGG	1 cut(s)	671
PkrI	GCNGC	1 cut(s)	82
PscI	ACATGT	1 cut(s)	324
Psp6I	CCWGG	4 cut(s)	169, 493, 574, 693
PspGI	CCWGG	4 cut(s)	169, 493, 574, 693
PspN4I	GGNNCC	3 cut(s)	450, 567, 699
PspPI	GGNCC	2 cut(s)	654, 662
PsrI	GAACNNNNNNTAC	2 cut(s)	375, 407
PstI	CTGCAG	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	565
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	3 cut(s)	206, 232, 384
RsaNI	GTAC	3 cut(s)	205, 231, 383
SaqAI	TTAA	3 cut(s)	356, 591, 717
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	3 cut(s)	118, 469, 565
Sau96I	GGNCC	2 cut(s)	654, 662
ScrFI	CCNGG	6 cut(s)	171, 338, 495, 576, 602, 695
SduI	GDGCHC	1 cut(s)	453
SexAI	ACCWGGT	3 cut(s)	169, 574, 693
SfaNI	GCATC	1 cut(s)	303
SfcI	CTRYAG	1 cut(s)	135
Sfr274I	CTCGAG	1 cut(s)	59
SinI	GGWCC	2 cut(s)	654, 662
SlaI	CTCGAG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	5 cut(s)	307, 519, 537, 613, 713
SsiI	CCGC	2 cut(s)	405, 660
SspMI	CTAG	3 cut(s)	155, 432, 596
StyD4I	CCNGG	6 cut(s)	169, 336, 493, 574, 600, 693
StyI	CCWWGG	1 cut(s)	665
TaaI	ACNGT	3 cut(s)	235, 630, 648
TaqI	TCGA	1 cut(s)	60
TasI	AATT	5 cut(s)	307, 519, 537, 613, 713
TatI	WGTACW	1 cut(s)	382
TfiI	GAWTC	2 cut(s)	408, 510
Tru1I	TTAA	3 cut(s)	356, 591, 717
Tru9I	TTAA	3 cut(s)	356, 591, 717
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	4 cut(s)	17, 537, 621, 722
TspGWI	ACGGA	1 cut(s)	25
Van91I	CCANNNNNTGG	1 cut(s)	671
VpaK11BI	GGWCC	2 cut(s)	654, 662
XagI	CCTNNNNNAGG	1 cut(s)	573
XapI	RAATTY	1 cut(s)	537
XceI	RCATGY	1 cut(s)	328
XhoI	CTCGAG	1 cut(s)	59
XspI	CTAG	3 cut(s)	155, 432, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.