Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8432573.1

Orthogroup ID

OG0000564

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1092

Gene Structure 1091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8432573.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1091 bp

atggataccaaaaccaacctaatgaagtccatggtttctgttcttttgttatgcctatctctcaaaactcatatctctcttgccgctgacaccatcactgtaaaccaatctctctctggtgatcaaaccattgtttcagcaggtggagtttttgaactgggtttcttcaatccaggtaactcaaagtactatataggcatttggtacaggagaagtccaagaaacgttgtctgggtggcgaatagggagcaaccagtctccgacacgtcatcagaattgaggatctcagatggtaatttggttctgtttagtgagtccaaaagtccaatttggtccacaaatgtctccacatcaggtacatctgttcacgcagttctttttgataacgggaaccttgttttaagagctgggaattcatcccagcctttatggcagagttttgatcacccaactgacactttgctagcagaaggtagaattgggttcagttctattactaaacaaaaacaaagtttgacttcatggaagagtttagaggatcctgcaccaggtctctattctattgagctagacccaaatgaaaccagctcatacattgtgttgtggaatgggtctagacagtattggaccagtggaccatgggatgtaaagactcggagattcagtttgattcctgagatgaggcttaattacatcttcaatttcagctatgtgacaaacaaaaacgaaagctatttcacctattctctttatgatcctacaatcttgtctagatgtctgatcgatgtctcggggcaagttaagcaactgtcatggttgagaccttccatagactggaaattgttttggtctcaaccaagacaacaatgcaaagtctatgccttttgtggggcttttggcaattgcaatgagaagtcctcacccttctgtaattgtttgaatggttttgagccgaaatcgaaggtggattgggatttgcaggattattctggtgggtgttcaagaagaactgatctgtattctgggaatgctactagtgataatgcggaaaaagaccgatttctagacatgcctagcatgtcattacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

363

Amino Acids

40.9

Weight (kDa)

6.82

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000564)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica	MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica	Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis	pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis	RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata	RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora	Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii	Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa	Rorug01G0022300 Rorug04G0061600
rosa_samantha	Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana	Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	131
AccB7I	CCANNNNNTGG	1 cut(s)	834
AciI	CCGC	2 cut(s)	84, 1046
AclI	AACGTT	1 cut(s)	225
AclWI	GGATC	4 cut(s)	290, 533, 546, 749
AcsI	RAATTY	1 cut(s)	412
AfaI	GTAC	3 cut(s)	188, 206, 358
AfiI	CCNNNNNNNGG	3 cut(s)	548, 834, 888
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	5 cut(s)	155, 169, 700, 940, 1002
AhlI	ACTAGT	1 cut(s)	1034
AjiI	CACGTC	1 cut(s)	267
AjnI	CCWGG	2 cut(s)	172, 547
AjuI	GAANNNNNNNTTGG	2 cut(s)	462, 494
AluBI	AGCT	5 cut(s)	407, 568, 588, 708, 732
AluI	AGCT	5 cut(s)	407, 568, 588, 708, 732
Alw26I	GTCTC	6 cut(s)	262, 349, 557, 793, 814, 855
AlwI	GGATC	4 cut(s)	290, 533, 546, 749
Ama87I	CYCGRG	1 cut(s)	790
ApoI	RAATTY	1 cut(s)	412
AspS9I	GGNCC	3 cut(s)	333, 627, 635
AsuHPI	GGTGA	4 cut(s)	131, 437, 730, 912
AsuNHI	GCTAGC	1 cut(s)	463
AvaI	CYCGRG	1 cut(s)	790
AvaII	GGWCC	3 cut(s)	333, 627, 635
BaeI	ACNNNNGTAYC	2 cut(s)	348, 381
BamHI	GGATCC	1 cut(s)	538
BccI	CCATC	2 cut(s)	101, 284
BciT130I	CCWGG	2 cut(s)	174, 549
BclI	TGATCA	2 cut(s)	121, 442
BcoDI	GTCTC	6 cut(s)	262, 349, 557, 793, 814, 855
BcuI	ACTAGT	1 cut(s)	1034
BfaI	CTAG	7 cut(s)	464, 569, 615, 771, 1035, 1064, 1074
BfuAI	ACCTGC	1 cut(s)	131
BglI	GCCNNNNNGGC	1 cut(s)	430
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BmcAI	AGTACT	1 cut(s)	188
Bme1390I	CCNGG	2 cut(s)	174, 549
Bme18I	GGWCC	3 cut(s)	333, 627, 635
BmeT110I	CYCGRG	1 cut(s)	790
BmgBI	CACGTC	1 cut(s)	267
BmgT120I	GGNCC	3 cut(s)	333, 627, 635
BmiI	GGNNCC	2 cut(s)	392, 540
BmrFI	CCNGG	2 cut(s)	174, 549
BmrI	ACTGGG	1 cut(s)	167
BmtI	GCTAGC	1 cut(s)	467
BmuI	ACTGGG	1 cut(s)	167
BplI	GAGNNNNNCTC	2 cut(s)	902, 934
Bsa29I	ATCGAT	1 cut(s)	783
BsaI	GGTCTC	3 cut(s)	557, 814, 855
BsaJI	CCNNGG	2 cut(s)	30, 638
BsaXI	ACNNNNNCTCC	2 cut(s)	649, 679
Bsc4I	CCNNNNNNNGG	3 cut(s)	548, 834, 888
Bse1I	ACTGG	4 cut(s)	162, 254, 630, 839
Bse3DI	GCAATG	1 cut(s)	913
BseBI	CCWGG	2 cut(s)	174, 549
BseCI	ATCGAT	1 cut(s)	783
BseDI	CCNNGG	2 cut(s)	30, 638
BseGI	GGATG	2 cut(s)	416, 649
BseLI	CCNNNNNNNGG	3 cut(s)	548, 834, 888
BseMI	GCAATG	1 cut(s)	913
BseMII	CTCAG	2 cut(s)	300, 666
BseNI	ACTGG	4 cut(s)	162, 254, 630, 839
BseYI	CCCAGC	2 cut(s)	407, 420
BsgI	GTGCAG	1 cut(s)	528
BshVI	ATCGAT	1 cut(s)	783
BsiHKCI	CYCGRG	1 cut(s)	790
BslI	CCNNNNNNNGG	3 cut(s)	548, 834, 888
BsmAI	GTCTC	6 cut(s)	262, 349, 557, 793, 814, 855
BsmI	GAATGC	1 cut(s)	1033
Bso31I	GGTCTC	3 cut(s)	557, 814, 855
BsoBI	CYCGRG	1 cut(s)	790
Bsp143I	GATC	7 cut(s)	121, 282, 442, 538, 754, 780, 1012
Bsp19I	CCATGG	2 cut(s)	30, 638
BspACI	CCGC	2 cut(s)	84, 1046
BspCNI	CTCAG	2 cut(s)	299, 667
BspDI	ATCGAT	1 cut(s)	783
BspLI	GGNNCC	2 cut(s)	392, 540
BspMI	ACCTGC	1 cut(s)	131
BspOI	GCTAGC	1 cut(s)	467
BspPI	GGATC	4 cut(s)	290, 533, 546, 749
BspTNI	GGTCTC	3 cut(s)	557, 814, 855
BsrDI	GCAATG	1 cut(s)	913
BsrI	ACTGG	4 cut(s)	162, 254, 630, 839
BssECI	CCNNGG	2 cut(s)	30, 638
BssMI	GATC	7 cut(s)	121, 282, 442, 538, 754, 780, 1012
BssT1I	CCWWGG	2 cut(s)	30, 638
Bst2UI	CCWGG	2 cut(s)	174, 549
Bst4CI	ACNGT	3 cut(s)	100, 621, 810
Bst6I	CTCTTC	1 cut(s)	521
BstC8I	GCNNGC	1 cut(s)	465
BstDEI	CTNAG	2 cut(s)	286, 675
BstDSI	CCRYGG	2 cut(s)	30, 638
BstENI	CCTNNNNNAGG	1 cut(s)	546
BstF5I	GGATG	2 cut(s)	416, 649
BstKTI	GATC	7 cut(s)	124, 285, 445, 541, 757, 783, 1015
BstMAI	GTCTC	6 cut(s)	262, 349, 557, 793, 814, 855
BstMBI	GATC	7 cut(s)	121, 282, 442, 538, 754, 780, 1012
BstMWI	GCNNNNNNNGC	2 cut(s)	430, 802
BstNI	CCWGG	2 cut(s)	174, 549
BstNSI	RCATGY	2 cut(s)	1072, 1081
BstSCI	CCNGG	2 cut(s)	172, 547
BstX2I	RGATCY	2 cut(s)	282, 538
BstYI	RGATCY	2 cut(s)	282, 538
Bsu15I	ATCGAT	1 cut(s)	783
BsuTUI	ATCGAT	1 cut(s)	783
BtgI	CCRYGG	2 cut(s)	30, 638
BtrI	CACGTC	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	416, 649
BtsIMutI	CAGTG	2 cut(s)	96, 637
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	465
Cfr13I	GGNCC	3 cut(s)	333, 627, 635
ClaI	ATCGAT	1 cut(s)	783
CsiI	ACCWGGT	1 cut(s)	547
Csp6I	GTAC	3 cut(s)	187, 205, 357
CviAII	CATG	6 cut(s)	31, 522, 639, 813, 1069, 1078
CviJI	RGCY	9 cut(s)	407, 424, 568, 588, 685, 708, 732, 893, 952
CviKI_1	RGCY	9 cut(s)	407, 424, 568, 588, 685, 708, 732, 893, 952
CviQI	GTAC	3 cut(s)	187, 205, 357
DdeI	CTNAG	2 cut(s)	286, 675
DpnI	GATC	7 cut(s)	123, 284, 444, 540, 756, 782, 1014
DpnII	GATC	7 cut(s)	121, 282, 442, 538, 754, 780, 1012
Eam1104I	CTCTTC	1 cut(s)	521
EarI	CTCTTC	1 cut(s)	521
Eco130I	CCWWGG	2 cut(s)	30, 638
Eco31I	GGTCTC	3 cut(s)	557, 814, 855
Eco47I	GGWCC	3 cut(s)	333, 627, 635
Eco88I	CYCGRG	1 cut(s)	790
EcoNI	CCTNNNNNAGG	1 cut(s)	546
EcoRI	GAATTC	1 cut(s)	412
EcoRII	CCWGG	2 cut(s)	172, 547
EcoT14I	CCWWGG	2 cut(s)	30, 638
ErhI	CCWWGG	2 cut(s)	30, 638
FaeI	CATG	6 cut(s)	34, 525, 642, 816, 1072, 1081
FalI	AAGNNNNNCTT	2 cut(s)	502, 534
FatI	CATG	6 cut(s)	30, 521, 638, 812, 1068, 1077
FbaI	TGATCA	2 cut(s)	121, 442
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	2 cut(s)	403, 656
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	7 cut(s)	464, 569, 615, 771, 1035, 1064, 1074
GluI	GCNGC	1 cut(s)	84
GsaI	CCCAGC	2 cut(s)	411, 424
Hin1II	CATG	6 cut(s)	34, 525, 642, 816, 1072, 1081
HinfI	GANTC	4 cut(s)	314, 652, 660, 670
HphI	GGTGA	4 cut(s)	131, 437, 730, 912
Hpy166II	GTNNAC	4 cut(s)	103, 336, 367, 635
Hpy188I	TCNGA	5 cut(s)	262, 274, 289, 657, 780
Hpy188III	TCNNGA	5 cut(s)	615, 674, 771, 1002, 1064
Hpy8I	GTNNAC	4 cut(s)	103, 336, 367, 635
HpyAV	CCTTC	4 cut(s)	464, 834, 934, 955
HpyCH4III	ACNGT	3 cut(s)	100, 621, 810
HpyCH4IV	ACGT	2 cut(s)	225, 266
HpyCH4V	TGCA	4 cut(s)	545, 870, 906, 979
HpyF10VI	GCNNNNNNNGC	2 cut(s)	430, 802
HpyF3I	CTNAG	2 cut(s)	286, 675
HpySE526I	ACGT	2 cut(s)	225, 266
Hsp92II	CATG	6 cut(s)	34, 525, 642, 816, 1072, 1081
Ksp22I	TGATCA	2 cut(s)	121, 442
Kzo9I	GATC	7 cut(s)	121, 282, 442, 538, 754, 780, 1012
LmnI	GCTCC	1 cut(s)	247
MabI	ACCWGGT	1 cut(s)	547
MaeI	CTAG	7 cut(s)	464, 569, 615, 771, 1035, 1064, 1074
MaeII	ACGT	2 cut(s)	225, 266
MaeIII	GTNAC	2 cut(s)	176, 712
MalI	GATC	7 cut(s)	123, 284, 444, 540, 756, 782, 1014
MboI	GATC	7 cut(s)	121, 282, 442, 538, 754, 780, 1012
MboII	GAAGA	4 cut(s)	157, 538, 688, 1017
MfeI	CAATTG	1 cut(s)	901
MflI	RGATCY	2 cut(s)	282, 538
MlyI	GAGTC	2 cut(s)	323, 646
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	4 cut(s)	273, 529, 675, 928
MseI	TTAA	3 cut(s)	401, 687, 801
MspA1I	CMGCKG	1 cut(s)	86
MspR9I	CCNGG	2 cut(s)	174, 549
MunI	CAATTG	1 cut(s)	901
Mva1269I	GAATGC	1 cut(s)	1033
MvaI	CCWGG	2 cut(s)	174, 549
MwoI	GCNNNNNNNGC	2 cut(s)	430, 802
NcoI	CCATGG	2 cut(s)	30, 638
NdeII	GATC	7 cut(s)	121, 282, 442, 538, 754, 780, 1012
NheI	GCTAGC	1 cut(s)	463
NlaIII	CATG	6 cut(s)	34, 525, 642, 816, 1072, 1081
NlaIV	GGNNCC	2 cut(s)	392, 540
NmuCI	GTSAC	1 cut(s)	712
NspI	RCATGY	2 cut(s)	1072, 1081
PaqCI	CACCTGC	1 cut(s)	131
PctI	GAATGC	1 cut(s)	1033
PfeI	GAWTC	2 cut(s)	660, 670
PflMI	CCANNNNNTGG	1 cut(s)	834
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	2 cut(s)	322, 646
PpsI	GAGTC	2 cut(s)	322, 646
Psp1406I	AACGTT	1 cut(s)	225
Psp6I	CCWGG	2 cut(s)	172, 547
PspFI	CCCAGC	2 cut(s)	407, 420
PspGI	CCWGG	2 cut(s)	172, 547
PspN4I	GGNNCC	2 cut(s)	392, 540
PspPI	GGNCC	3 cut(s)	333, 627, 635
PsuI	RGATCY	2 cut(s)	282, 538
RsaI	GTAC	3 cut(s)	188, 206, 358
RsaNI	GTAC	3 cut(s)	187, 205, 357
SaqAI	TTAA	3 cut(s)	401, 687, 801
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	7 cut(s)	121, 282, 442, 538, 754, 780, 1012
Sau96I	GGNCC	3 cut(s)	333, 627, 635
ScaI	AGTACT	1 cut(s)	188
SchI	GAGTC	2 cut(s)	323, 646
ScrFI	CCNGG	2 cut(s)	174, 549
SexAI	ACCWGGT	1 cut(s)	547
SinI	GGWCC	3 cut(s)	333, 627, 635
SpeI	ACTAGT	1 cut(s)	1034
SsiI	CCGC	2 cut(s)	84, 1046
SspMI	CTAG	7 cut(s)	464, 569, 615, 771, 1035, 1064, 1074
StyD4I	CCNGG	2 cut(s)	172, 547
StyI	CCWWGG	2 cut(s)	30, 638
TaaI	ACNGT	3 cut(s)	100, 621, 810
TaiI	ACGT	2 cut(s)	228, 269
TaqI	TCGA	2 cut(s)	783, 959
TaqII	GACCGA	1 cut(s)	1071
TatI	WGTACW	1 cut(s)	186
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	2 cut(s)	660, 670
Tru1I	TTAA	3 cut(s)	401, 687, 801
Tru9I	TTAA	3 cut(s)	401, 687, 801
TscAI	CASTG	2 cut(s)	103, 637
TseFI	GTSAC	1 cut(s)	712
Tsp45I	GTSAC	1 cut(s)	712
TspDTI	ATGAA	4 cut(s)	38, 405, 510, 594
TspRI	CASTG	2 cut(s)	103, 637
Van91I	CCANNNNNTGG	1 cut(s)	834
VpaK11BI	GGWCC	3 cut(s)	333, 627, 635
XagI	CCTNNNNNAGG	1 cut(s)	546
XapI	RAATTY	1 cut(s)	412
XbaI	TCTAGA	3 cut(s)	614, 770, 1063
XceI	RCATGY	2 cut(s)	1072, 1081
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XspI	CTAG	7 cut(s)	464, 569, 615, 771, 1035, 1064, 1074
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.