Rh1AG035300

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000564
Physical Location & Seq
Forward (+)
6170747 .. 6174247
3501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG035300.1

Sequence Viewer

Length: 2460 bp
ATGGATACCAAGAGCAACCCAATTACGTTGATGCTTTCCCTTTTCTTCTTGTGCCTATGTCTCAAGTCCCATATCTGCTTTGGAGCTGACACCATCACAGCAAACCAGTCTCTCTCTGGTGACCAAACCATTGTTTCAGCTGGTGGGAAATTTGAACTGGGTTTCTTCGAGGCAGGTAATACTGCAAACTACTACATAGGCATGTGGTACTACAAGAAACTAGTACCAGACCAAACCATAGTCTGGGTGGCCAATAGGGTGCAGCCAGTCTCTGATAGATTTTCTTCAGAGTTGAGAATCTCAGATGGTAATTTGGTATTGTTTAATGAGTCCAAAACCCCTATTTGGGCCACAAATGTCAGTTCAAGTTCAGCCTCTTTTATACACGTAGTTCTTTTAGATAATGGAAACCTTGCGCTAAGAGCTGGGTCTTTGCCTTTATGGCAAAGTTTTGATCAACCAGCCCACACTTTTCTACCAGAAAGCAAACTTGGGTTCAACAATGTTACAAAGCGAACTCAACTCCTGACTTCATGGAAGAATTCTGAGGATCCTGCACCGGGTCCATTCTCTCTTGAGCTAGACGCAACAAGCAACTCATTTATTATAAAGTGGAATAGGTCTCAACAGTATTGGACAACTGGATTTTGGGATCAAAGCAGACATAGGTTCAGTTTGCTTTCCGAGATGTTGATGCCTAACCATATCTTCAATTTCAGATATGTTACAAACGAAAATGAGAGCTACTTCACCTATTCTCTTTATGGTGCTAACATCACATCTCGATTAATAATGGATGTATCGGGTCAAGTTAAGCAACTGTCCTGGTTGCACACAGGGGGATGGAAATTGTTATGGATTCAACCAAAGAATCACTGTGATGTTTATGGTCTATGTGGGGCATTTAGTCGTTGTAGTGAGAAACCCTTGCCCCTCTGTAATTGTTTGAATGGTTATGAACCGAAATCCAAGGTGGATTGGGATTTGCAGGATTACTCCCTAGGGTGTTCAAGAAAAACCAGGCTGCAGTGTGGAAATGTTACTGGTGTTGATGGGATGAGTGACCGGTTTATAGAAATGTCTAGCAGGCTATCATCCGAAGATATACAGATTCAGAATTTGACTTATGTTCATAGTATTGAAGACTGTGAATCAATTTGCTTAAATGATTGCAATTGCACTGCTTATGGTTATAGCAGCTCTTCTTCTGAATGTTCAACTTGGAAAGGAGATATGTGGGCGGATGAAAATGGAAGAACTTTATACATCAGAACAGCAGCTTCTGATTATAAGAATCCCACAAGTAGAAAGCGAACCATTGTAATTGCAACAGTCTCAGCAACTGCAGGGTTGCTTACAATAGTCTTTGGCCATTTTTTATGGAAGAATACTTTGGGAAAGAGAAGTGAAACTATAAAGAATCTTAGCGCTGCTGGTGTGGAGAATGATACAGAACTACCACTATACAGTTTAAGGAGTATATTAGTGGCTACTAATAACTTCTCTGAAGCGAATAAACTAGGAGAGGGAGGATTCGGCCCTGTTTATAAGGGGATTTTGCCTGAAAATCAAGAAGTAGCCATAAAAAGGCTATCAAAGAAGTCCGGGCAAGGACAACAGGAGTTCATGAATGAGTTAAAGCTTATTGCGAAGCTCCAACATACCAACCTTGTCAGACTCTTGGGTTGCTGCATTGAAGCAGAGGAAATGATATTGGTGTATGAGTACATGCCAAATCGAAGTTTGGACAAATTTTTGTTTGATCCATCCGAAAAGACAAAACTGGATTGGGGTAGACGTTTTAGAATTATAGAAGGTATAGCTCAAGGATTGCTTTATATCCACAAGTACTCAAGATTAAGAATCATTCACAGGGATCTAAAAGCAAGTAATATTCTATTGGATGGAACAATGAACCCTAAGATTTCTGACTTTGGAATGGCAAAGATTTTTGACATAAATCAAACTGAAGCAAATACTAACAGGGTTGTTGGGACCTACGGTTACATGTCACCTGAGTATGCACGTTATGGTCATTTCTCTGAGAAATCGGATGTATTTAGCTTTGGAGTTTTGTTGCTGGAGATTGTAAGTGGAAAGAAGAATGCTGTTTTCTATCGTTCTGAACGTTCACTAACTCTCGCTGGATGGGCATGGGACCTATGGAACGAAGGAAGGGGAATAGAGGTGATTGATGCATCAATAAGGGAAATATTTCAGGCTCATGAAGCTTTAAGGTGTATCCATGTAGGACTTCTGTGCGTTCAAGAATCTGCAGCTGATCGACCTACAATGGCGTCAGTAATTCACATGTTGCAGGGAAATGAAGCTACATCTCTTCCACCCACCAAAGAACCTGCTTTTTCAACACAGAAGAATTTCAGTGCTATTGGTTCTTCTCAAAGATCTACCAATTATTCAAACAATGCACTCACGATTAGTTTGCCAGAAGCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

819

Amino Acids

92.09

Weight (kDa)

7.2

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 79 - 180 5.7e-29 D-mannose binding lectin
S_locus_glycop PF00954 212 - 323 6.5e-25 S-locus glycoprotein domain
PAN_2 PF08276 354 - 412 6.3e-09 PAN-like domain
Pkinase PF00069 502 - 701 1.2e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 504 - 771 3.1e-50 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44064 FvH4_6g44064 FvH4_6g44100 FvH4_6g44101 FvH4_6g51830
malus_domestica MD09G1094400.v1.1 MD09G1094800.v1.1 MD09G1095200.v1.1 MD09G1095900.v1.1 MD09G1096000.v1.1 MD09G1096200.v1.1 MD17G1083900.v1.1 MD17G1088500.v1.1
prunus_persica Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G224900_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225100_v2.0.a1 Prupe.3G225200_v2.0.a1 Prupe.3G225200_v2.0.a1
pyrus_communis pycom09g01920 pycom09g01930 pycom09g01940 pycom09g01950 pycom09g02000 pycom09g02050 pycom09g02070 pycom17g08540
rosa_chinensis RchiOBHm_Chr1g0318601 RchiOBHm_Chr1g0318761 RchiOBHm_Chr1g0342541 RchiOBHm_Chr2g0160651 RchiOBHm_Chr2g0160831 RchiOBHm_Chr4g0405661 RchiOBHm_Chr4g0405691 RchiOBHm_Chr4g0405701 RchiOBHm_Chr7g0238591
rosa_laevigata RLG00000002292 RLG00000008826 RLG00000008828 RLG00000008829 RLG00000021243 RLG00000021245 RLG00000030522
rosa_multiflora Rmu_co8432573.1_g000001 Rmu_sc0001200.1_g000041 Rmu_sc0001200.1_g000043 Rmu_sc0002545.1_g000017 Rmu_sc0002773.1_g000017 Rmu_sc0012550.1_g000008
rosa_roxburghii Rroxscaffold_2G00089500 Rroxscaffold_5G00350130 Rroxscaffold_5G00350180
rosa_rugosa Rorug01G0022300 Rorug04G0061600
rosa_samantha Rh1AG035300 Rh1CG034300 Rh1DG036100 Rh1DG149100 Rh2AG550900 Rh2BG564200 Rh2BG565500 Rh2CG535300 Rh2DG574400 Rh4AG133100 Rh4AG133200 Rh4AG133300 Rh4BG128200 Rh4CG141000 Rh4DG127700 Rh4DG127900
rosa_wichuraiana Rw2G045540 Rw2G045650 Rw4G010790 Rw4G010800 Rw4G010810 Rw4G010830 Rw7G027620 Rw7G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 608, 1290, 1548
Acc36I ACCTGC 2 cut(s) 164, 2365
AccB7I CCANNNNNTGG 1 cut(s) 243
AccI GTMKAC 1 cut(s) 1795
AciI CCGC 1 cut(s) 1241
AclI AACGTT 1 cut(s) 2128
AclWI GGATC 5 cut(s) 545, 558, 660, 1757, 1884
AcoI YGGCCR 2 cut(s) 249, 1369
AcsI RAATTY 5 cut(s) 149, 541, 1117, 1751, 2377
AcuI CTGAAG 3 cut(s) 270, 1527, 1989
AcyI GRCGYC 1 cut(s) 2297
AfaI GTAC 4 cut(s) 209, 225, 1727, 1850
AfeI AGCGCT 1 cut(s) 1429
AfiI CCNNNNNNNGG 5 cut(s) 243, 345, 346, 560, 1587
AflIII ACRYGT 3 cut(s) 385, 2007, 2310
AgeI ACCGGT 1 cut(s) 1065
AhlI ACTAGT 1 cut(s) 220
AjnI CCWGG 2 cut(s) 824, 1019
AjuI GAANNNNNNNTTGG 4 cut(s) 474, 506, 1376, 1408
Alw26I GTCTC 5 cut(s) 65, 114, 274, 627, 1339
AlwI GGATC 5 cut(s) 545, 558, 660, 1757, 1884
AlwNI CAGNNNCTG 3 cut(s) 272, 1283, 1343
Aor51HI AGCGCT 1 cut(s) 1429
AoxI GGCC 4 cut(s) 249, 348, 1369, 1537
ApeKI GCWGC 7 cut(s) 262, 1024, 1197, 1277, 1430, 1689, 2276
ApoI RAATTY 5 cut(s) 149, 541, 1117, 1751, 2377
AseI ATTAAT 1 cut(s) 788
AsiGI ACCGGT 1 cut(s) 1065
Asp700I GAANNNNTTC 2 cut(s) 2214, 2378
AspA2I CCTAGG 1 cut(s) 1000
AspLEI GCGC 2 cut(s) 418, 1430
AspS9I GGNCC 5 cut(s) 348, 563, 1538, 1995, 2158
AsuC2I CCSGG 2 cut(s) 561, 1606
AsuHPI GGTGA 4 cut(s) 131, 742, 2004, 2200
AvaII GGWCC 3 cut(s) 563, 1995, 2158
AvrII CCTAGG 1 cut(s) 1000
BalI TGGCCA 2 cut(s) 251, 1371
BamHI GGATCC 1 cut(s) 550
BbsI GAAGAC 1 cut(s) 1149
BbvI GCAGC 7 cut(s) 274, 1011, 1209, 1289, 1417, 1676, 2288
BccI CCATC 7 cut(s) 101, 299, 837, 1046, 1774, 1898, 2142
BcgI CGANNNNNNTGC 2 cut(s) 2425, 2459
BciT130I CCWGG 2 cut(s) 826, 1021
BciVI GTATCC 1 cut(s) 2252
BclI TGATCA 1 cut(s) 454
BcnI CCSGG 2 cut(s) 561, 1606
BcoDI GTCTC 5 cut(s) 65, 114, 274, 627, 1339
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 5 cut(s) 221, 581, 1001, 1083, 1520
BfmI CTRYAG 3 cut(s) 1025, 1344, 2274
BfoI RGCGCY 1 cut(s) 1431
BfuAI ACCTGC 2 cut(s) 164, 2365
BfuI GTATCC 1 cut(s) 2252
BglI GCCNNNNNGGC 1 cut(s) 442
BglII AGATCT 1 cut(s) 2405
BisI GCNGC 7 cut(s) 263, 1025, 1198, 1278, 1431, 1690, 2277
BlnI CCTAGG 1 cut(s) 1000
BlsI GCNGC 7 cut(s) 264, 1026, 1199, 1279, 1432, 1691, 2278
BmcAI AGTACT 1 cut(s) 1850
Bme1390I CCNGG 4 cut(s) 561, 826, 1021, 1606
Bme18I GGWCC 3 cut(s) 563, 1995, 2158
BmgT120I GGNCC 5 cut(s) 348, 563, 1538, 1995, 2158
BmiI GGNNCC 4 cut(s) 552, 564, 1996, 2159
BmrFI CCNGG 4 cut(s) 561, 826, 1021, 1606
BmrI ACTGGG 1 cut(s) 167
BmsI GCATC 4 cut(s) 21, 684, 2185, 2207
BmuI ACTGGG 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 1149
BpmI CTGGAG 1 cut(s) 2102
BpuEI CTTGAG 4 cut(s) 47, 596, 1809, 1837
BpuMI CCSGG 2 cut(s) 561, 1606
BsaAI YACGTR 1 cut(s) 388
BsaHI GRCGYC 1 cut(s) 2297
BsaI GGTCTC 1 cut(s) 627
BsaJI CCNNGG 2 cut(s) 969, 1000
BsaWI WCCGGW 1 cut(s) 1065
Bsc4I CCNNNNNNNGG 5 cut(s) 243, 345, 346, 560, 1587
Bse118I RCCGGY 1 cut(s) 1065
Bse1I ACTGG 6 cut(s) 106, 162, 266, 646, 1048, 1788
BseBI CCWGG 2 cut(s) 826, 1021
BseDI CCNNGG 2 cut(s) 969, 1000
BseGI GGATG 9 cut(s) 802, 848, 1062, 1094, 1249, 1766, 1909, 2059, 2153
BseLI CCNNNNNNNGG 5 cut(s) 243, 345, 346, 560, 1587
BseMII CTCAG 5 cut(s) 315, 537, 1350, 2007, 2034
BseNI ACTGG 6 cut(s) 106, 162, 266, 646, 1048, 1788
BseXI GCAGC 7 cut(s) 274, 1011, 1209, 1289, 1417, 1676, 2288
BseYI CCCAGC 1 cut(s) 425
BsgI GTGCAG 2 cut(s) 281, 540
BshFI GGCC 4 cut(s) 251, 350, 1371, 1539
BshTI ACCGGT 1 cut(s) 1065
BsiSI CCGG 3 cut(s) 560, 1066, 1605
BslFI GGGAC 3 cut(s) 52, 2008, 2171
BslI CCNNNNNNNGG 5 cut(s) 243, 345, 346, 560, 1587
BsmAI GTCTC 5 cut(s) 65, 114, 274, 627, 1339
BsmFI GGGAC 3 cut(s) 52, 2008, 2171
BsmI GAATGC 1 cut(s) 2110
BsnI GGCC 4 cut(s) 251, 350, 1371, 1539
Bso31I GGTCTC 1 cut(s) 627
Bsp143I GATC 7 cut(s) 454, 550, 652, 1762, 1876, 2281, 2405
BspACI CCGC 1 cut(s) 1241
BspANI GGCC 4 cut(s) 251, 350, 1371, 1539
BspCNI CTCAG 5 cut(s) 314, 538, 1349, 2008, 2035
BspHI TCATGA 2 cut(s) 1626, 2224
BspLI GGNNCC 4 cut(s) 552, 564, 1996, 2159
BspMAI CTGCAG 3 cut(s) 1029, 1348, 2278
BspMI ACCTGC 2 cut(s) 164, 2365
BspPI GGATC 5 cut(s) 545, 558, 660, 1757, 1884
BspQI GCTCTTC 1 cut(s) 1207
BspTNI GGTCTC 1 cut(s) 627
BsrFI RCCGGY 1 cut(s) 1065
BsrI ACTGG 6 cut(s) 106, 162, 266, 646, 1048, 1788
BssAI RCCGGY 1 cut(s) 1065
BssECI CCNNGG 2 cut(s) 969, 1000
BssMI GATC 7 cut(s) 454, 550, 652, 1762, 1876, 2281, 2405
BssNI GRCGYC 1 cut(s) 2297
BssT1I CCWWGG 2 cut(s) 969, 1000
Bst2UI CCWGG 2 cut(s) 826, 1021
Bst4CI ACNGT 7 cut(s) 630, 822, 878, 1148, 1333, 1469, 2003
Bst6I CTCTTC 2 cut(s) 1207, 2343
BstACI GRCGYC 1 cut(s) 2297
BstBAI YACGTR 1 cut(s) 388
BstC8I GCNNGC 1 cut(s) 1088
BstDEI CTNAG 8 cut(s) 301, 419, 546, 1336, 1424, 1920, 2016, 2043
BstEII GGTNACC 1 cut(s) 119
BstF5I GGATG 9 cut(s) 802, 848, 1062, 1094, 1249, 1766, 1909, 2059, 2153
BstH2I RGCGCY 1 cut(s) 1431
BstHHI GCGC 2 cut(s) 418, 1430
BstKTI GATC 7 cut(s) 457, 553, 655, 1765, 1879, 2284, 2408
BstMAI GTCTC 5 cut(s) 65, 114, 274, 627, 1339
BstMBI GATC 7 cut(s) 454, 550, 652, 1762, 1876, 2281, 2405
BstMWI GCNNNNNNNGC 4 cut(s) 422, 442, 2150, 2228
BstNI CCWGG 2 cut(s) 826, 1021
BstNSI RCATGY 4 cut(s) 205, 1732, 2011, 2314
BstPI GGTNACC 1 cut(s) 119
BstSCI CCNGG 4 cut(s) 559, 824, 1019, 1604
BstSFI CTRYAG 3 cut(s) 1025, 1344, 2274
BstV1I GCAGC 7 cut(s) 274, 1011, 1209, 1289, 1417, 1676, 2288
BstV2I GAAGAC 1 cut(s) 1149
BstX2I RGATCY 3 cut(s) 550, 1876, 2405
BstYI RGATCY 3 cut(s) 550, 1876, 2405
BsuI GTATCC 1 cut(s) 2252
BsuRI GGCC 4 cut(s) 251, 350, 1371, 1539
BtsCI GGATG 9 cut(s) 802, 848, 1062, 1094, 1249, 1766, 1909, 2059, 2153
BtsI GCAGTG 2 cut(s) 1034, 1179
BtsIMutI CAGTG 4 cut(s) 874, 1034, 1179, 2389
BveI ACCTGC 2 cut(s) 164, 2365
Cac8I GCNNGC 1 cut(s) 1088
CaiI CAGNNNCTG 3 cut(s) 272, 1283, 1343
CciI TCATGA 2 cut(s) 1626, 2224
CfoI GCGC 2 cut(s) 418, 1430
Cfr10I RCCGGY 1 cut(s) 1065
Cfr13I GGNCC 5 cut(s) 348, 563, 1538, 1995, 2158
CseI GACGC 2 cut(s) 593, 2286
Csp6I GTAC 4 cut(s) 208, 224, 1726, 1849
CspAI ACCGGT 1 cut(s) 1065
CviAII CATG 9 cut(s) 202, 534, 1627, 1729, 2008, 2154, 2225, 2246, 2311
CviQI GTAC 4 cut(s) 208, 224, 1726, 1849
DdeI CTNAG 8 cut(s) 301, 419, 546, 1336, 1424, 1920, 2016, 2043
DpnI GATC 7 cut(s) 456, 552, 654, 1764, 1878, 2283, 2407
DpnII GATC 7 cut(s) 454, 550, 652, 1762, 1876, 2281, 2405
EaeI YGGCCR 2 cut(s) 249, 1369
Eam1104I CTCTTC 2 cut(s) 1207, 2343
EarI CTCTTC 2 cut(s) 1207, 2343
EciI GGCGGA 1 cut(s) 1256
Eco130I CCWWGG 2 cut(s) 969, 1000
Eco31I GGTCTC 1 cut(s) 627
Eco47I GGWCC 3 cut(s) 563, 1995, 2158
Eco47III AGCGCT 1 cut(s) 1429
Eco57I CTGAAG 3 cut(s) 270, 1527, 1989
Eco91I GGTNACC 1 cut(s) 119
EcoO109I RGGNCCY 2 cut(s) 1995, 2158
EcoO65I GGTNACC 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 541
EcoRII CCWGG 2 cut(s) 824, 1019
EcoT14I CCWWGG 2 cut(s) 969, 1000
EcoT22I ATGCAT 1 cut(s) 2200
ErhI CCWWGG 2 cut(s) 969, 1000
FaeI CATG 9 cut(s) 205, 537, 1630, 1732, 2011, 2157, 2228, 2249, 2314
FalI AAGNNNNNCTT 2 cut(s) 1818, 1850
FaqI GGGAC 3 cut(s) 52, 2008, 2171
FatI CATG 9 cut(s) 201, 533, 1626, 1728, 2007, 2153, 2224, 2245, 2310
FbaI TGATCA 1 cut(s) 454
FblI GTMKAC 1 cut(s) 1795
Fnu4HI GCNGC 7 cut(s) 263, 1025, 1198, 1278, 1431, 1690, 2277
FokI GGATG 9 cut(s) 809, 855, 1069, 1081, 1256, 1753, 1916, 2066, 2160
Fsp4HI GCNGC 7 cut(s) 263, 1025, 1198, 1278, 1431, 1690, 2277
FspBI CTAG 5 cut(s) 221, 581, 1001, 1083, 1520
GlaI GCGC 2 cut(s) 417, 1429
GluI GCNGC 7 cut(s) 263, 1025, 1198, 1278, 1431, 1690, 2277
GsaI CCCAGC 1 cut(s) 429
GsuI CTGGAG 1 cut(s) 2102
HaeII RGCGCY 1 cut(s) 1431
HaeIII GGCC 4 cut(s) 251, 350, 1371, 1539
HapII CCGG 3 cut(s) 560, 1066, 1605
HgaI GACGC 2 cut(s) 593, 2286
HhaI GCGC 2 cut(s) 418, 1430
Hin1I GRCGYC 1 cut(s) 2297
Hin1II CATG 9 cut(s) 205, 537, 1630, 1732, 2011, 2157, 2228, 2249, 2314
Hin6I GCGC 2 cut(s) 416, 1428
HinP1I GCGC 2 cut(s) 416, 1428
HindIII AAGCTT 2 cut(s) 1640, 2229
HpaII CCGG 3 cut(s) 560, 1066, 1605
HphI GGTGA 4 cut(s) 131, 742, 2004, 2200
Hpy166II GTNNAC 2 cut(s) 1796, 2132
Hpy8I GTNNAC 2 cut(s) 1796, 2132
HpyAV CCTTC 3 cut(s) 1808, 2165, 2169
HpyCH4III ACNGT 7 cut(s) 630, 822, 878, 1148, 1333, 1469, 2003
HpyCH4IV ACGT 5 cut(s) 26, 387, 1798, 2026, 2128
HpyF10VI GCNNNNNNNGC 4 cut(s) 422, 442, 2150, 2228
HpyF3I CTNAG 8 cut(s) 301, 419, 546, 1336, 1424, 1920, 2016, 2043
HpySE526I ACGT 5 cut(s) 26, 387, 1798, 2026, 2128
Hsp92I GRCGYC 1 cut(s) 2297
Hsp92II CATG 9 cut(s) 205, 537, 1630, 1732, 2011, 2157, 2228, 2249, 2314
HspAI GCGC 2 cut(s) 416, 1428
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 7 cut(s) 454, 550, 652, 1762, 1876, 2281, 2405
LguI GCTCTTC 1 cut(s) 1207
LmnI GCTCC 2 cut(s) 83, 1659
Lsp1109I GCAGC 7 cut(s) 274, 1011, 1209, 1289, 1417, 1676, 2288
LweI GCATC 4 cut(s) 21, 684, 2185, 2207
MaeI CTAG 5 cut(s) 221, 581, 1001, 1083, 1520
MaeII ACGT 5 cut(s) 26, 387, 1798, 2026, 2128
MaeIII GTNAC 7 cut(s) 119, 505, 724, 1039, 1061, 2003, 2010
MalI GATC 7 cut(s) 456, 552, 654, 1764, 1878, 2283, 2407
MboI GATC 7 cut(s) 454, 550, 652, 1762, 1876, 2281, 2405
MfeI CAATTG 1 cut(s) 1174
MflI RGATCY 3 cut(s) 550, 1876, 2405
MlsI TGGCCA 2 cut(s) 251, 1371
MluNI TGGCCA 2 cut(s) 251, 1371
MlyI GAGTC 2 cut(s) 338, 1671
MmeI TCCRAC 1 cut(s) 1681
MnlI CCTC 8 cut(s) 163, 385, 541, 944, 1519, 1523, 1696, 2179
Mox20I TGGCCA 2 cut(s) 251, 1371
Mph1103I ATGCAT 1 cut(s) 2200
MroXI GAANNNNTTC 2 cut(s) 2214, 2378
MscI TGGCCA 2 cut(s) 251, 1371
MseI TTAA 8 cut(s) 324, 788, 813, 1163, 1472, 1637, 1859, 2234
MslI CAYNNNNRTG 2 cut(s) 200, 879
Msp20I TGGCCA 2 cut(s) 251, 1371
MspA1I CMGCKG 2 cut(s) 140, 2279
MspI CCGG 3 cut(s) 560, 1066, 1605
MspR9I CCNGG 4 cut(s) 561, 826, 1021, 1606
MunI CAATTG 1 cut(s) 1174
Mva1269I GAATGC 1 cut(s) 2110
MvaI CCWGG 2 cut(s) 826, 1021
MwoI GCNNNNNNNGC 4 cut(s) 422, 442, 2150, 2228
NciI CCSGG 2 cut(s) 561, 1606
NdeII GATC 7 cut(s) 454, 550, 652, 1762, 1876, 2281, 2405
NlaIII CATG 9 cut(s) 205, 537, 1630, 1732, 2011, 2157, 2228, 2249, 2314
NlaIV GGNNCC 4 cut(s) 552, 564, 1996, 2159
NmuCI GTSAC 3 cut(s) 119, 1061, 2010
NsiI ATGCAT 1 cut(s) 2200
NspI RCATGY 4 cut(s) 205, 1732, 2011, 2314
PagI TCATGA 2 cut(s) 1626, 2224
PciI ACATGT 2 cut(s) 2007, 2310
PciSI GCTCTTC 1 cut(s) 1207
PcsI WCGNNNNNNNCGW 1 cut(s) 2125
PctI GAATGC 1 cut(s) 2110
PdmI GAANNNNTTC 2 cut(s) 2214, 2378
PflMI CCANNNNNTGG 1 cut(s) 243
PinAI ACCGGT 1 cut(s) 1065
PkrI GCNGC 7 cut(s) 264, 1026, 1199, 1279, 1432, 1691, 2278
PleI GAGTC 2 cut(s) 337, 1671
PpsI GAGTC 2 cut(s) 337, 1671
Ppu21I YACGTR 1 cut(s) 388
PpuMI RGGWCCY 2 cut(s) 1995, 2158
PscI ACATGT 2 cut(s) 2007, 2310
PshBI ATTAAT 1 cut(s) 788
PsiI TTATAA 3 cut(s) 608, 1290, 1548
Psp1406I AACGTT 1 cut(s) 2128
Psp5II RGGWCCY 2 cut(s) 1995, 2158
Psp6I CCWGG 2 cut(s) 824, 1019
PspEI GGTNACC 1 cut(s) 119
PspFI CCCAGC 1 cut(s) 425
PspGI CCWGG 2 cut(s) 824, 1019
PspN4I GGNNCC 4 cut(s) 552, 564, 1996, 2159
PspPI GGNCC 5 cut(s) 348, 563, 1538, 1995, 2158
PspPPI RGGWCCY 2 cut(s) 1995, 2158
PstI CTGCAG 3 cut(s) 1029, 1348, 2278
PstNI CAGNNNCTG 3 cut(s) 272, 1283, 1343
PsuI RGATCY 3 cut(s) 550, 1876, 2405
PvuII CAGCTG 2 cut(s) 140, 2279
RsaI GTAC 4 cut(s) 209, 225, 1727, 1850
RsaNI GTAC 4 cut(s) 208, 224, 1726, 1849
RseI CAYNNNNRTG 2 cut(s) 200, 879
SapI GCTCTTC 1 cut(s) 1207
SaqAI TTAA 8 cut(s) 324, 788, 813, 1163, 1472, 1637, 1859, 2234
SatI GCNGC 7 cut(s) 263, 1025, 1198, 1278, 1431, 1690, 2277
Sau3AI GATC 7 cut(s) 454, 550, 652, 1762, 1876, 2281, 2405
Sau96I GGNCC 5 cut(s) 348, 563, 1538, 1995, 2158
ScaI AGTACT 1 cut(s) 1850
SchI GAGTC 2 cut(s) 338, 1671
ScrFI CCNGG 4 cut(s) 561, 826, 1021, 1606
SfaNI GCATC 4 cut(s) 21, 684, 2185, 2207
SfcI CTRYAG 3 cut(s) 1025, 1344, 2274
SinI GGWCC 3 cut(s) 563, 1995, 2158
SmiMI CAYNNNNRTG 2 cut(s) 200, 879
SmlI CTYRAG 4 cut(s) 62, 575, 1824, 1852
SmoI CTYRAG 4 cut(s) 62, 575, 1824, 1852
SpeI ACTAGT 1 cut(s) 220
SsiI CCGC 1 cut(s) 1241
SspI AATATT 2 cut(s) 1894, 2214
SspMI CTAG 5 cut(s) 221, 581, 1001, 1083, 1520
StyD4I CCNGG 4 cut(s) 559, 824, 1019, 1604
StyI CCWWGG 2 cut(s) 969, 1000
TaaI ACNGT 7 cut(s) 630, 822, 878, 1148, 1333, 1469, 2003
TaiI ACGT 5 cut(s) 29, 390, 1801, 2029, 2131
TaqI TCGA 5 cut(s) 168, 784, 1738, 2284, 2455
TatI WGTACW 2 cut(s) 1725, 1848
Tru1I TTAA 8 cut(s) 324, 788, 813, 1163, 1472, 1637, 1859, 2234
Tru9I TTAA 8 cut(s) 324, 788, 813, 1163, 1472, 1637, 1859, 2234
TscAI CASTG 4 cut(s) 881, 1034, 1186, 2389
TseFI GTSAC 3 cut(s) 119, 1061, 2010
TseI GCWGC 7 cut(s) 262, 1024, 1197, 1277, 1430, 1689, 2276
Tsp45I GTSAC 3 cut(s) 119, 1061, 2010
TspDTI ATGAA 9 cut(s) 522, 972, 1121, 1260, 1615, 1643, 1928, 2241, 2340
TspRI CASTG 4 cut(s) 881, 1034, 1186, 2389
Van91I CCANNNNNTGG 1 cut(s) 243
VpaK11BI GGWCC 3 cut(s) 563, 1995, 2158
VspI ATTAAT 1 cut(s) 788
XapI RAATTY 5 cut(s) 149, 541, 1117, 1751, 2377
XceI RCATGY 4 cut(s) 205, 1732, 2011, 2314
XcmI CCANNNNNNNNNTGG 3 cut(s) 77, 113, 244
XmaJI CCTAGG 1 cut(s) 1000
XmiI GTMKAC 1 cut(s) 1795
XmnI GAANNNNTTC 2 cut(s) 2214, 2378
XspI CTAG 5 cut(s) 221, 581, 1001, 1083, 1520
ZrmI AGTACT 1 cut(s) 1850
Zsp2I ATGCAT 1 cut(s) 2200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.