Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Forward (+)

8253892 .. 8255505

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g08341.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGCTGCTGCTTCGCCGGAGCCTCTCCCCCAAACCCTTCTCTGTCTCAATCACCGCCGTCCCCTTCTCCTCCTCCTCCTCAGCCGTTGATCTCCTCCTCCTCCCCTCCTCCTCCTACACCGTCACCCCTCCGATCCCAAACTGGCCCCACCACCTCCACCCAAAGCGCCTCATCTCCCTCATCACCCGCGAACCCAACCTCGACCTCGCCCTCCGAATCTTCCACCACGCCTCCCAACACCACCCTGGTTTCCGCCATAATTACCACACCTACCACTCCCTCATCCTCCGCCTCCTCCGCTCCCGCGCCCTCCACCTCATCGACCCCCTCCTCTCCGACCTCCTCCGCTCCCGCCTCCGCTGCCACGAGGACCTCTTCGTCTCCCTCATCCGCCACTACGGCGTCGTTTCCCGCCCCAACCTCGCCTTCAAGACCTTCCTCTCCATCCCCAAATTCCGCGCCGAACGATCCGTCCGGTCCTTGAACGCCTTGCTCAACGCTCTGGTGCAGAATCGCAGCTGCGATTTAGTCCATTCGGTGTTTCGAAGCTCTAAGGAGAGATTCGGAGTTTCGCCGAATGTGTCTAGTTGCAATATCCTCATCAAGGCATTGTGCAAAAGAAATGATCTGGAGACTGCACGCCAGGTGCTCGACGAAATGCCTGCGATGGGATTTGTGCCCAATGTGGTGAGTTTCACCACCATTTTAGGGGGATACGTGTCGCGGCGAGATATGGTTGGTGCCAAGAGAGTTTTTGGTGAGATTTTGGACAGAGGGTGGTGTCCTGATGCGACCACGTATACTGTGTTGATGGATGGATATGTGAAGGAGGGGAAGCTGGTGGAGGCTGTTAAGGTTATGGATGAGATGGAGGATAATGGAGTCGGCGCGAATGAGGTTACTTATGGGGTTATGATTGAAGGTTATTGTAAGGGGAGGAAGGGGGGCGAAGCGGTTAATTTGCTTAATGATATGGTGGATAAGAGATATGTGCCATGCTCGGCGCTATGTTGCAAGGTGGTTGATGTTCTGTGTTGCCAAGGGAAGGTGGAGAATGCTTGCGAGCTGTGGAGGAGGCTTTTGAAGAAGAATTGCATGCCGGATAATGCTGTGTTGGGGACACTGATATACTGGCTTTGTAAGAAGGGGAAAGTATGGGAAGCCAGGAAATTGTTTGATCAGTTTGAGACGAGTGAGCCTCCGGATGTGATGACTTACAACGTTCTTATTTCAGGAATGTGTGAAGCGGGGGAGTTGTGTGAGGCAGGGAGGTTGTGGGATGATATGGTAGAGAAAGGATATACTCCAAATTCTTTTACGTATAATGTATTGATCAAAGGATTCTGTAAGATTAAGAAAGCGACTGAGGGGATTAGGATTTTGGATGAGATGTTAGAAAAAGGCTGTTTGCCAAACAAGTCTACTTATGCTATGTTAATGGAGGGGCTCTGTGACTCGGGAGAGGAAGCTGAAATTAATAGATTAATATCTATGGCAATGTCAAGTGGACACGTTGACAGTGATTCCTGGGATCTTTTCCTTACTAAGGTTGTTTGTGATTTGGATTCTGGGGAAAGTGTTCTAAACAGAATACTACAGGAGAATCCTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

538

Amino Acids

60.42

Weight (kDa)

8.16

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	157 - 206	8.2e-06	PPR repeat family
PPR_3	PF13812	187 - 241	2.4e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	189 - 220	6.1e-08	PPR repeat
PPR_2	PF13041	192 - 239	7.2e-13	PPR repeat family
PPR_2	PF13041	227 - 276	1.2e-11	PPR repeat family
PPR_3	PF13812	251 - 309	6.5e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	259 - 291	4.8e-08	PPR repeat
PPR_2	PF13041	262 - 311	9.2e-16	PPR repeat family
PPR	PF01535	266 - 295	2.2e-08	PPR repeat
PPR_2	PF13041	298 - 332	5.1e-06	PPR repeat family
PPR_1	PF12854	363 - 394	4.7e-06	PPR repeat
PPR_1	PF12854	401 - 430	1.1e-08	PPR repeat
PPR_2	PF13041	401 - 450	2.7e-19	PPR repeat family
PPR_3	PF13812	401 - 448	9.8e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	424 - 481	2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	432 - 464	5e-08	PPR repeat
PPR	PF01535	439 - 469	6.4e-07	PPR repeat
PPR_2	PF13041	441 - 485	2.4e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	377
AccB1I	GGYRCC	1 cut(s)	740
AccBSI	CCGCTC	2 cut(s)	300, 348
AccI	GTMKAC	2 cut(s)	800, 1421
AccII	CGCG	5 cut(s)	189, 306, 459, 724, 890
AccIII	TCCGGA	1 cut(s)	1201
AclI	AACGTT	1 cut(s)	1221
AclWI	GGATC	3 cut(s)	127, 462, 1539
AcsI	RAATTY	2 cut(s)	452, 1309
AcyI	GRCGYC	1 cut(s)	402
AfiI	CCNNNNNNNGG	5 cut(s)	604, 668, 708, 1045, 1546
AflIII	ACRYGT	2 cut(s)	717, 1510
AgsI	TTSAA	4 cut(s)	430, 484, 920, 1084
AjnI	CCWGG	4 cut(s)	244, 642, 1163, 1526
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AloI	GAACNNNNNNTCC	2 cut(s)	456, 488
AluBI	AGCT	5 cut(s)	519, 549, 838, 1066, 1469
AluI	AGCT	5 cut(s)	519, 549, 838, 1066, 1469
Alw21I	GWGCWC	1 cut(s)	651
Alw26I	GTCTC	4 cut(s)	49, 385, 626, 1181
AlwI	GGATC	3 cut(s)	127, 462, 1539
Ama87I	CYCGRG	1 cut(s)	1456
Aor13HI	TCCGGA	1 cut(s)	1201
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	5 cut(s)	4, 7, 360, 516, 519
ApoI	RAATTY	2 cut(s)	452, 1309
ArsI	GACNNNNNNTTYG	2 cut(s)	456, 488
AseI	ATTAAT	2 cut(s)	1476, 1484
Asp700I	GAANNNNTTC	1 cut(s)	1578
AspLEI	GCGC	5 cut(s)	168, 308, 461, 890, 1006
AspS9I	GGNCC	3 cut(s)	144, 370, 477
AsuHPI	GGTGA	6 cut(s)	43, 115, 175, 688, 700, 770
AsuII	TTCGAA	1 cut(s)	544
AvaI	CYCGRG	1 cut(s)	1456
AvaII	GGWCC	2 cut(s)	370, 477
BaeGI	GKGCMC	1 cut(s)	681
BanI	GGYRCC	1 cut(s)	740
BanII	GRGCYC	1 cut(s)	1449
BauI	CACGAG	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	651
BbvCI	CCTCAGC	1 cut(s)	79
BbvI	GCAGC	3 cut(s)	347, 506, 528
BccI	CCATC	5 cut(s)	452, 661, 805, 809, 862
BceAI	ACGGC	3 cut(s)	41, 68, 415
BcgI	CGANNNNNNTGC	2 cut(s)	644, 678
BciT130I	CCWGG	4 cut(s)	246, 644, 1165, 1528
BciVI	GTATCC	1 cut(s)	707
BclI	TGATCA	2 cut(s)	1177, 1332
BcoDI	GTCTC	4 cut(s)	49, 385, 626, 1181
BfaI	CTAG	1 cut(s)	585
BfmI	CTRYAG	1 cut(s)	1595
BfoI	RGCGCY	2 cut(s)	169, 1007
BfuI	GTATCC	1 cut(s)	707
BglI	GCCNNNNNGGC	1 cut(s)	399
BisI	GCNGC	6 cut(s)	5, 8, 361, 517, 520, 725
BlsI	GCNGC	6 cut(s)	6, 9, 362, 518, 521, 726
Bme1390I	CCNGG	4 cut(s)	246, 644, 1165, 1528
Bme18I	GGWCC	2 cut(s)	370, 477
BmeT110I	CYCGRG	1 cut(s)	1456
BmgT120I	GGNCC	3 cut(s)	144, 370, 477
BmiI	GGNNCC	3 cut(s)	20, 146, 742
BmrFI	CCNGG	4 cut(s)	246, 644, 1165, 1528
BmsI	GCATC	1 cut(s)	778
BplI	GAGNNNNNCTC	2 cut(s)	1183, 1215
BpmI	CTGGAG	1 cut(s)	650
Bpu10I	CCTNAGC	1 cut(s)	79
Bpu14I	TTCGAA	1 cut(s)	544
BsaAI	YACGTR	3 cut(s)	718, 798, 1320
BsaBI	GATNNNNATC	1 cut(s)	1486
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	3 cut(s)	244, 1039, 1527
BsaWI	WCCGGW	2 cut(s)	474, 1201
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	5 cut(s)	604, 668, 708, 1045, 1546
Bse1I	ACTGG	2 cut(s)	146, 1136
Bse3DI	GCAATG	1 cut(s)	1503
Bse8I	GATNNNNATC	1 cut(s)	1486
BseAI	TCCGGA	1 cut(s)	1201
BseBI	CCWGG	4 cut(s)	246, 644, 1165, 1528
BseDI	CCNNGG	3 cut(s)	244, 1039, 1527
BseGI	GGATG	8 cut(s)	282, 387, 444, 820, 868, 1210, 1285, 1390
BseJI	GATNNNNATC	1 cut(s)	1486
BseLI	CCNNNNNNNGG	5 cut(s)	604, 668, 708, 1045, 1546
BseMI	GCAATG	1 cut(s)	1503
BseMII	CTCAG	2 cut(s)	93, 1356
BseNI	ACTGG	2 cut(s)	146, 1136
BseSI	GKGCMC	1 cut(s)	681
BseXI	GCAGC	3 cut(s)	347, 506, 528
BsgI	GTGCAG	2 cut(s)	527, 621
Bsh1236I	CGCG	5 cut(s)	189, 306, 459, 724, 890
BshFI	GGCC	1 cut(s)	145
BshNI	GGYRCC	1 cut(s)	740
BsiHKAI	GWGCWC	1 cut(s)	651
BsiHKCI	CYCGRG	1 cut(s)	1456
BsiSI	CCGG	4 cut(s)	16, 475, 1100, 1202
BslFI	GGGAC	2 cut(s)	44, 1132
BslI	CCNNNNNNNGG	5 cut(s)	604, 668, 708, 1045, 1546
BsmAI	GTCTC	4 cut(s)	49, 385, 626, 1181
BsmBI	CGTCTC	2 cut(s)	385, 1181
BsmFI	GGGAC	2 cut(s)	44, 1132
BsmI	GAATGC	1 cut(s)	1060
BsnI	GGCC	1 cut(s)	145
BsoBI	CYCGRG	1 cut(s)	1456
Bsp119I	TTCGAA	1 cut(s)	544
Bsp1286I	GDGCHC	3 cut(s)	651, 681, 1449
Bsp13I	TCCGGA	1 cut(s)	1201
Bsp143I	GATC	7 cut(s)	88, 132, 467, 625, 1177, 1332, 1531
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	2 cut(s)	92, 1357
BspEI	TCCGGA	1 cut(s)	1201
BspFNI	CGCG	5 cut(s)	189, 306, 459, 724, 890
BspLI	GGNNCC	3 cut(s)	20, 146, 742
BspPI	GGATC	3 cut(s)	127, 462, 1539
BspT104I	TTCGAA	1 cut(s)	544
BspT107I	GGYRCC	1 cut(s)	740
BsrBI	CCGCTC	2 cut(s)	300, 348
BsrDI	GCAATG	1 cut(s)	1503
BsrI	ACTGG	2 cut(s)	146, 1136
BssECI	CCNNGG	3 cut(s)	244, 1039, 1527
BssMI	GATC	7 cut(s)	88, 132, 467, 625, 1177, 1332, 1531
BssNAI	GTATAC	1 cut(s)	801
BssNI	GRCGYC	1 cut(s)	402
BssSI	CACGAG	1 cut(s)	365
BssT1I	CCWWGG	1 cut(s)	1039
Bst1107I	GTATAC	1 cut(s)	801
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	4 cut(s)	246, 644, 1165, 1528
Bst4CI	ACNGT	3 cut(s)	121, 805, 1520
Bst6I	CTCTTC	1 cut(s)	380
BstACI	GRCGYC	1 cut(s)	402
BstBAI	YACGTR	3 cut(s)	718, 798, 1320
BstBI	TTCGAA	1 cut(s)	544
BstC8I	GCNNGC	5 cut(s)	640, 663, 1060, 1064, 1097
BstDEI	CTNAG	4 cut(s)	79, 552, 1365, 1545
BstENI	CCTNNNNNAGG	2 cut(s)	602, 1544
BstF5I	GGATG	8 cut(s)	282, 387, 444, 820, 868, 1210, 1285, 1390
BstFNI	CGCG	5 cut(s)	189, 306, 459, 724, 890
BstH2I	RGCGCY	2 cut(s)	169, 1007
BstHHI	GCGC	5 cut(s)	168, 308, 461, 890, 1006
BstKTI	GATC	7 cut(s)	91, 135, 470, 628, 1180, 1335, 1534
BstMAI	GTCTC	4 cut(s)	49, 385, 626, 1181
BstMBI	GATC	7 cut(s)	88, 132, 467, 625, 1177, 1332, 1531
BstMWI	GCNNNNNNNGC	3 cut(s)	297, 360, 399
BstNI	CCWGG	4 cut(s)	246, 644, 1165, 1528
BstNSI	RCATGY	1 cut(s)	1099
BstSCI	CCNGG	4 cut(s)	244, 642, 1163, 1526
BstSFI	CTRYAG	1 cut(s)	1595
BstSLI	GKGCMC	1 cut(s)	681
BstSNI	TACGTA	1 cut(s)	1320
BstUI	CGCG	5 cut(s)	189, 306, 459, 724, 890
BstV1I	GCAGC	3 cut(s)	347, 506, 528
BstX2I	RGATCY	1 cut(s)	1531
BstYI	RGATCY	1 cut(s)	1531
BstZ17I	GTATAC	1 cut(s)	801
BsuI	GTATCC	1 cut(s)	707
BsuRI	GGCC	1 cut(s)	145
BtgZI	GCGATG	1 cut(s)	680
BtsCI	GGATG	8 cut(s)	282, 387, 444, 820, 868, 1210, 1285, 1390
BtsIMutI	CAGTG	2 cut(s)	1121, 1525
Cac8I	GCNNGC	5 cut(s)	640, 663, 1060, 1064, 1097
CfoI	GCGC	5 cut(s)	168, 308, 461, 890, 1006
Cfr13I	GGNCC	3 cut(s)	144, 370, 477
CseI	GACGC	1 cut(s)	391
CviAII	CATG	2 cut(s)	996, 1096
DdeI	CTNAG	4 cut(s)	79, 552, 1365, 1545
DpnI	GATC	7 cut(s)	90, 134, 469, 627, 1179, 1334, 1533
DpnII	GATC	7 cut(s)	88, 132, 467, 625, 1177, 1332, 1531
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
EciI	GGCGGA	3 cut(s)	242, 278, 380
Eco105I	TACGTA	1 cut(s)	1320
Eco130I	CCWWGG	1 cut(s)	1039
Eco24I	GRGCYC	1 cut(s)	1449
Eco47I	GGWCC	2 cut(s)	370, 477
Eco88I	CYCGRG	1 cut(s)	1456
EcoNI	CCTNNNNNAGG	2 cut(s)	602, 1544
EcoO109I	RGGNCCY	1 cut(s)	370
EcoRII	CCWGG	4 cut(s)	244, 642, 1163, 1526
EcoT14I	CCWWGG	1 cut(s)	1039
EcoT38I	GRGCYC	1 cut(s)	1449
ErhI	CCWWGG	1 cut(s)	1039
Esp3I	CGTCTC	2 cut(s)	385, 1181
FaeI	CATG	2 cut(s)	999, 1099
FaqI	GGGAC	2 cut(s)	44, 1132
FatI	CATG	2 cut(s)	995, 1095
FauI	CCCGC	5 cut(s)	194, 311, 359, 419, 1240
FbaI	TGATCA	2 cut(s)	1177, 1332
FblI	GTMKAC	2 cut(s)	800, 1421
Fnu4HI	GCNGC	6 cut(s)	5, 8, 361, 517, 520, 725
FokI	GGATG	8 cut(s)	269, 374, 431, 827, 875, 1217, 1292, 1397
FriOI	GRGCYC	1 cut(s)	1449
Fsp4HI	GCNGC	6 cut(s)	5, 8, 361, 517, 520, 725
FspBI	CTAG	1 cut(s)	585
GlaI	GCGC	5 cut(s)	167, 307, 460, 889, 1005
GluI	GCNGC	6 cut(s)	5, 8, 361, 517, 520, 725
GsuI	CTGGAG	1 cut(s)	650
HaeII	RGCGCY	2 cut(s)	169, 1007
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	4 cut(s)	16, 475, 1100, 1202
HgaI	GACGC	1 cut(s)	391
HhaI	GCGC	5 cut(s)	168, 308, 461, 890, 1006
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	2 cut(s)	999, 1099
Hin6I	GCGC	5 cut(s)	166, 306, 459, 888, 1004
HinP1I	GCGC	5 cut(s)	166, 306, 459, 888, 1004
HincII	GTYRAC	1 cut(s)	1516
HindII	GTYRAC	1 cut(s)	1516
HinfI	GANTC	9 cut(s)	216, 511, 561, 882, 1341, 1454, 1523, 1565, 1603
HpaII	CCGG	4 cut(s)	16, 475, 1100, 1202
HphI	GGTGA	6 cut(s)	43, 115, 175, 688, 700, 770
Hpy166II	GTNNAC	4 cut(s)	801, 1422, 1508, 1516
Hpy188I	TCNGA	4 cut(s)	132, 215, 337, 566
Hpy188III	TCNNGA	6 cut(s)	430, 629, 785, 1202, 1233, 1458
Hpy8I	GTNNAC	4 cut(s)	801, 1422, 1508, 1516
Hpy99I	CGWCG	2 cut(s)	407, 656
HpyAV	CCTTC	9 cut(s)	46, 73, 436, 445, 820, 914, 934, 1039, 1138
HpyCH4III	ACNGT	3 cut(s)	121, 805, 1520
HpyCH4IV	ACGT	5 cut(s)	717, 797, 1221, 1319, 1512
HpyCH4V	TGCA	6 cut(s)	508, 591, 615, 638, 1014, 1095
HpyF10VI	GCNNNNNNNGC	3 cut(s)	297, 360, 399
HpyF3I	CTNAG	4 cut(s)	79, 552, 1365, 1545
HpySE526I	ACGT	5 cut(s)	717, 797, 1221, 1319, 1512
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	999, 1099
HspAI	GCGC	5 cut(s)	166, 306, 459, 888, 1004
Kpn2I	TCCGGA	1 cut(s)	1201
Ksp22I	TGATCA	2 cut(s)	1177, 1332
Kzo9I	GATC	7 cut(s)	88, 132, 467, 625, 1177, 1332, 1531
LmnI	GCTCC	3 cut(s)	18, 305, 353
Lsp1109I	GCAGC	3 cut(s)	347, 506, 528
LweI	GCATC	1 cut(s)	778
MaeI	CTAG	1 cut(s)	585
MaeII	ACGT	5 cut(s)	717, 797, 1221, 1319, 1512
MaeIII	GTNAC	3 cut(s)	121, 898, 1451
MalI	GATC	7 cut(s)	90, 134, 469, 627, 1179, 1334, 1533
MbiI	CCGCTC	2 cut(s)	300, 348
MboI	GATC	7 cut(s)	88, 132, 467, 625, 1177, 1332, 1531
MboII	GAAGA	4 cut(s)	211, 367, 1096, 1099
MflI	RGATCY	1 cut(s)	1531
MhlI	GDGCHC	3 cut(s)	651, 681, 1449
MluCI	AATT	7 cut(s)	259, 452, 958, 1090, 1169, 1309, 1473
MlyI	GAGTC	2 cut(s)	891, 1448
MmeI	TCCRAC	1 cut(s)	360
MroI	TCCGGA	1 cut(s)	1201
MroXI	GAANNNNTTC	1 cut(s)	1578
MseI	TTAA	7 cut(s)	852, 957, 966, 1353, 1436, 1476, 1484
MspA1I	CMGCKG	2 cut(s)	360, 519
MspI	CCGG	4 cut(s)	16, 475, 1100, 1202
MspR9I	CCNGG	4 cut(s)	246, 644, 1165, 1528
Mva1269I	GAATGC	1 cut(s)	1060
MvaI	CCWGG	4 cut(s)	246, 644, 1165, 1528
MvnI	CGCG	5 cut(s)	189, 306, 459, 724, 890
MwoI	GCNNNNNNNGC	3 cut(s)	297, 360, 399
NdeII	GATC	7 cut(s)	88, 132, 467, 625, 1177, 1332, 1531
NlaIII	CATG	2 cut(s)	999, 1099
NlaIV	GGNNCC	3 cut(s)	20, 146, 742
NmeAIII	GCCGAG	1 cut(s)	980
NmuCI	GTSAC	2 cut(s)	121, 1451
NspI	RCATGY	1 cut(s)	1099
NspV	TTCGAA	1 cut(s)	544
PaeI	GCATGC	1 cut(s)	1099
PctI	GAATGC	1 cut(s)	1060
PdmI	GAANNNNTTC	1 cut(s)	1578
PfeI	GAWTC	7 cut(s)	216, 511, 561, 1341, 1523, 1565, 1603
PkrI	GCNGC	6 cut(s)	6, 9, 362, 518, 521, 726
PleI	GAGTC	2 cut(s)	890, 1448
PpsI	GAGTC	2 cut(s)	890, 1448
Ppu21I	YACGTR	3 cut(s)	718, 798, 1320
PpuMI	RGGWCCY	1 cut(s)	370
PshBI	ATTAAT	2 cut(s)	1476, 1484
Psp1406I	AACGTT	1 cut(s)	1221
Psp5II	RGGWCCY	1 cut(s)	370
Psp6I	CCWGG	4 cut(s)	244, 642, 1163, 1526
PspGI	CCWGG	4 cut(s)	244, 642, 1163, 1526
PspN4I	GGNNCC	3 cut(s)	20, 146, 742
PspPI	GGNCC	3 cut(s)	144, 370, 477
PspPPI	RGGWCCY	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	1531
PvuII	CAGCTG	1 cut(s)	519
SaqAI	TTAA	7 cut(s)	852, 957, 966, 1353, 1436, 1476, 1484
SatI	GCNGC	6 cut(s)	5, 8, 361, 517, 520, 725
Sau3AI	GATC	7 cut(s)	88, 132, 467, 625, 1177, 1332, 1531
Sau96I	GGNCC	3 cut(s)	144, 370, 477
SchI	GAGTC	2 cut(s)	891, 1448
ScrFI	CCNGG	4 cut(s)	246, 644, 1165, 1528
SduI	GDGCHC	3 cut(s)	651, 681, 1449
SfaNI	GCATC	1 cut(s)	778
SfcI	CTRYAG	1 cut(s)	1595
SfuI	TTCGAA	1 cut(s)	544
SinI	GGWCC	2 cut(s)	370, 477
SnaBI	TACGTA	1 cut(s)	1320
SphI	GCATGC	1 cut(s)	1099
Sse9I	AATT	7 cut(s)	259, 452, 958, 1090, 1169, 1309, 1473
SspMI	CTAG	1 cut(s)	585
StyD4I	CCNGG	4 cut(s)	244, 642, 1163, 1526
StyI	CCWWGG	1 cut(s)	1039
TaaI	ACNGT	3 cut(s)	121, 805, 1520
TaiI	ACGT	5 cut(s)	720, 800, 1224, 1322, 1515
TaqI	TCGA	4 cut(s)	201, 321, 544, 651
TasI	AATT	7 cut(s)	259, 452, 958, 1090, 1169, 1309, 1473
TauI	GCSGC	1 cut(s)	727
TfiI	GAWTC	7 cut(s)	216, 511, 561, 1341, 1523, 1565, 1603
Tru1I	TTAA	7 cut(s)	852, 957, 966, 1353, 1436, 1476, 1484
Tru9I	TTAA	7 cut(s)	852, 957, 966, 1353, 1436, 1476, 1484
TscAI	CASTG	2 cut(s)	1128, 1525
TseFI	GTSAC	2 cut(s)	121, 1451
TseI	GCWGC	5 cut(s)	4, 7, 360, 516, 519
Tsp45I	GTSAC	2 cut(s)	121, 1451
TspGWI	ACGGA	1 cut(s)	460
TspRI	CASTG	2 cut(s)	1128, 1525
VpaK11BI	GGWCC	2 cut(s)	370, 477
VspI	ATTAAT	2 cut(s)	1476, 1484
XagI	CCTNNNNNAGG	2 cut(s)	602, 1544
XapI	RAATTY	2 cut(s)	452, 1309
XceI	RCATGY	1 cut(s)	1099
XcmI	CCANNNNNNNNNTGG	1 cut(s)	242
XmiI	GTMKAC	2 cut(s)	800, 1421
XmnI	GAANNNNTTC	1 cut(s)	1578
XspI	CTAG	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.