Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Reverse (-)

31931235 .. 31931657

Gene Structure 423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56713

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTGCGCCATGGGATTTGTGCCCAATGTGGTGACTTTTACTACCATTTTGGGTGCCAAGAGAGTGTTTGGTGAGAATTTGGACAGAGGGTGGTTTCCTGATGTGACTACTTATACCATATTGATGGATGGGTATGTGAAGCTGGTTGTGGCTATTAAGGTCATGGATGAGATGGAGGATGATGGGATTGGCGCCAATGAGGTTACTTATGGGGTTATGATTGAAGCTTATTGTAAGGAAAAGAAGTCGGCGCTTTGTTGTAAGGTGGAGAAAAGGTATATACCGAGCTCGGCGCTCTGTTGTAAGGTGATTGATGTTCTGTGTTGCGAAGGGAAGGTGGAGGATGCTTGTGAACTGTGGAAGAGGCTTTTGAAGAAGAATTGCACGCCAGATAATGCAGTATTGGGCACACTCATATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

140

Amino Acids

15.58

Weight (kDa)

5.23

Isoelectric Point (pI)

25.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	50 - 79	1.9e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	53, 191
AcsI	RAATTY	1 cut(s)	76
AcyI	GRCGYC	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	224, 373
AluBI	AGCT	3 cut(s)	142, 227, 288
AluI	AGCT	3 cut(s)	142, 227, 288
Alw21I	GWGCWC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	76
AspLEI	GCGC	4 cut(s)	8, 194, 253, 295
AsuHPI	GGTGA	3 cut(s)	43, 83, 319
BaeGI	GKGCMC	2 cut(s)	24, 410
BanI	GGYRCC	2 cut(s)	53, 191
BanII	GRGCYC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	290
BccI	CCATC	4 cut(s)	118, 122, 166, 176
BfaI	CTAG	1 cut(s)	421
BfoI	RGCGCY	3 cut(s)	195, 254, 296
BmiI	GGNNCC	2 cut(s)	55, 193
BmsI	GCATC	1 cut(s)	334
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	9
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	4 cut(s)	133, 172, 184, 349
BseSI	GKGCMC	2 cut(s)	24, 410
BshNI	GGYRCC	2 cut(s)	53, 191
BsiHKAI	GWGCWC	1 cut(s)	290
Bsp1286I	GDGCHC	3 cut(s)	24, 290, 410
Bsp19I	CCATGG	1 cut(s)	9
BspLI	GGNNCC	2 cut(s)	55, 193
BspT107I	GGYRCC	2 cut(s)	53, 191
BssECI	CCNNGG	1 cut(s)	9
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	357
Bst6I	CTCTTC	1 cut(s)	356
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	386
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	4 cut(s)	133, 172, 184, 349
BstH2I	RGCGCY	3 cut(s)	195, 254, 296
BstHHI	GCGC	4 cut(s)	8, 194, 253, 295
BstSLI	GKGCMC	2 cut(s)	24, 410
BstXI	CCANNNNNNTGG	1 cut(s)	124
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	4 cut(s)	133, 172, 184, 349
Cac8I	GCNNGC	1 cut(s)	386
CfoI	GCGC	4 cut(s)	8, 194, 253, 295
CviAII	CATG	2 cut(s)	10, 163
CviJI	RGCY	5 cut(s)	142, 152, 227, 288, 367
CviKI_1	RGCY	5 cut(s)	142, 152, 227, 288, 367
DinI	GGCGCC	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Ecl136II	GAGCTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	290
Eco53kI	GAGCTC	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	9
EcoT38I	GRGCYC	1 cut(s)	290
EgeI	GGCGCC	1 cut(s)	193
EheI	GGCGCC	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	2 cut(s)	13, 166
FatI	CATG	2 cut(s)	9, 162
FokI	GGATG	4 cut(s)	140, 179, 191, 356
FriOI	GRGCYC	1 cut(s)	290
FspBI	CTAG	1 cut(s)	421
GlaI	GCGC	4 cut(s)	7, 193, 252, 294
HaeII	RGCGCY	3 cut(s)	195, 254, 296
HhaI	GCGC	4 cut(s)	8, 194, 253, 295
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	13, 166
Hin6I	GCGC	4 cut(s)	6, 192, 251, 293
HinP1I	GCGC	4 cut(s)	6, 192, 251, 293
HindIII	AAGCTT	1 cut(s)	225
HphI	GGTGA	3 cut(s)	43, 83, 319
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	1 cut(s)	353
HpyAV	CCTTC	2 cut(s)	323, 328
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4V	TGCA	2 cut(s)	384, 398
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	13, 166
HspAI	GCGC	4 cut(s)	6, 192, 251, 293
KasI	GGCGCC	1 cut(s)	191
LpnPI	CCDG	3 cut(s)	111, 128, 402
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	421
MaeIII	GTNAC	3 cut(s)	31, 103, 202
MboII	GAAGA	3 cut(s)	373, 385, 388
MhlI	GDGCHC	3 cut(s)	24, 290, 410
MluCI	AATT	2 cut(s)	76, 379
Mly113I	GGCGCC	1 cut(s)	192
MnlI	CCTC	5 cut(s)	80, 169, 193, 334, 357
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	122
NarI	GGCGCC	1 cut(s)	192
NcoI	CCATGG	1 cut(s)	9
NlaIII	CATG	2 cut(s)	13, 166
NlaIV	GGNNCC	2 cut(s)	55, 193
NmeAIII	GCCGAG	1 cut(s)	269
NmuCI	GTSAC	2 cut(s)	31, 103
PluTI	GGCGCC	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	290
PspN4I	GGNNCC	2 cut(s)	55, 193
RseI	CAYNNNNRTG	1 cut(s)	122
SacI	GAGCTC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	156
SduI	GDGCHC	3 cut(s)	24, 290, 410
SetI	ASST	9 cut(s)	144, 162, 204, 229, 267, 278, 290, 309, 339
SfaNI	GCATC	1 cut(s)	334
SfoI	GGCGCC	1 cut(s)	193
SmiMI	CAYNNNNRTG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	76, 379
SspDI	GGCGCC	1 cut(s)	191
SspMI	CTAG	1 cut(s)	421
SstI	GAGCTC	1 cut(s)	290
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	357
TasI	AATT	2 cut(s)	76, 379
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseFI	GTSAC	2 cut(s)	31, 103
Tsp45I	GTSAC	2 cut(s)	31, 103
XapI	RAATTY	1 cut(s)	76
XspI	CTAG	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.