Rmu_sc0001836.1_g000016

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001836.1
OG0000530
Physical Location & Seq
Reverse (-)
63256 .. 67933
4678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001836.1_g000016.1.cds

Sequence Viewer

Length: 1047 bp
atggatgggtatgcgaagaagcttattgaggctattaaggttatggatgagatggaggataatggggttggcgccaatgaggttacttatggggttatgattgaagcttattgtaaggagaagaagtcgggcgaagcgattaatttgcttagtgatatggtcgagaagaggtatataccgagctcggtgctctgttgtaaggtgattgatgttttgtgttgcaaaggaaaggtggaggatgcttgtgaactgtggaagaggcttttgaagaagaattgcaagccggccaggaaattgtttgatcagtttgagacgagtcagtttccatttgaatacattttttctggaaatgggacaacaagtatcactcatgatttggagtattaccagttttattcatttagtgttgggtattactcaatcacgataatctgtaaaggtgtggagagatactacccaagagttcgagaggacttgatactcattgacatctcaagcaacaaatttggagggcagattcctgaattcattgggaaactccaggggatttggtcactcaatctctccaataacattctcacgggtcgcatcccatcatccttgagcaacttatcaaggcttgaatcattggacctttcacataacaagctctctggtgagattcctcagcaactggcacaactcgattctctctcaaagttcaatgtctctcacaacaatctcacaggccctgtaccacggggaatccacttcactacatttgacagcacttcatatctgggaaaccaaggattgtgcggagatttcttgccaaagaaatgtggaaattctgagggcagtcaacttccaccttcaacatcagaagataatgactcgggctctggaattgaattggattggaaatttgttgtggcagggtcagggagtggcttgttggtgggagtggttcttgcagactttgtgattaccaagtggaatgtgtggttcattgagattgttgcagtactgatcatgttttcgaaaaggataaggaagcctagaaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

348

Amino Acids

38.86

Weight (kDa)

6.16

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000530)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca FvH4_7g08341 FvH4_7g08360
malus_domestica MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica Prupe.2G106500_v2.0.a1
pyrus_communis pycom02g20040
rosa_chinensis RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AciI CCGC 1 cut(s) 798
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 4 cut(s) 503, 524, 826, 902
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 2 cut(s) 735, 1005
AgsI TTSAA 7 cut(s) 104, 268, 332, 623, 703, 855, 890
AjnI CCWGG 2 cut(s) 287, 540
AluBI AGCT 4 cut(s) 22, 107, 183, 649
AluI AGCT 4 cut(s) 22, 107, 183, 649
Alw21I GWGCWC 2 cut(s) 185, 192
Alw26I GTCTC 2 cut(s) 305, 712
AlwNI CAGNNNCTG 2 cut(s) 673, 731
Ama87I CYCGRG 1 cut(s) 874
AoxI GGCC 2 cut(s) 285, 727
ApoI RAATTY 4 cut(s) 503, 524, 826, 902
AseI ATTAAT 1 cut(s) 141
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 2 cut(s) 631, 728
AsuHPI GGTGA 2 cut(s) 214, 668
AsuII TTCGAA 1 cut(s) 1019
AvaI CYCGRG 1 cut(s) 874
AvaII GGWCC 1 cut(s) 631
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 2 cut(s) 185, 881
Bbv12I GWGCWC 2 cut(s) 185, 192
BbvCI CCTCAGC 1 cut(s) 666
BccI CCATC 2 cut(s) 46, 601
BcgI CGANNNNNNTGC 4 cut(s) 127, 161, 169, 203
BciT130I CCWGG 2 cut(s) 289, 542
BclI TGATCA 2 cut(s) 301, 1008
BcoDI GTCTC 2 cut(s) 305, 712
BfaI CTAG 1 cut(s) 1038
BfoI RGCGCY 1 cut(s) 75
BmcAI AGTACT 1 cut(s) 1005
Bme1390I CCNGG 2 cut(s) 289, 542
Bme18I GGWCC 1 cut(s) 631
BmeT110I CYCGRG 1 cut(s) 874
BmgT120I GGNCC 2 cut(s) 631, 728
BmiI GGNNCC 1 cut(s) 73
BmrFI CCNGG 2 cut(s) 289, 542
BmsI GCATC 2 cut(s) 229, 597
BpmI CTGGAG 1 cut(s) 524
Bpu10I CCTNAGC 1 cut(s) 666
Bpu14I TTCGAA 1 cut(s) 1019
BpuEI CTTGAG 2 cut(s) 478, 622
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 3 cut(s) 541, 737, 787
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bse118I RCCGGY 1 cut(s) 283
Bse1I ACTGG 2 cut(s) 388, 678
BseBI CCWGG 2 cut(s) 289, 542
BseDI CCNNGG 3 cut(s) 541, 737, 787
BseGI GGATG 5 cut(s) 10, 52, 244, 588, 596
BseMII CTCAG 2 cut(s) 680, 822
BseNI ACTGG 2 cut(s) 388, 678
BshFI GGCC 2 cut(s) 287, 729
BshNI GGYRCC 1 cut(s) 71
BsiHKAI GWGCWC 2 cut(s) 185, 192
BsiHKCI CYCGRG 1 cut(s) 874
BsiSI CCGG 1 cut(s) 284
BslFI GGGAC 1 cut(s) 367
BsmAI GTCTC 2 cut(s) 305, 712
BsmBI CGTCTC 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 367
BsnI GGCC 2 cut(s) 287, 729
BsoBI CYCGRG 1 cut(s) 874
Bsp119I TTCGAA 1 cut(s) 1019
Bsp1286I GDGCHC 3 cut(s) 185, 192, 881
Bsp143I GATC 2 cut(s) 301, 1008
BspACI CCGC 1 cut(s) 798
BspANI GGCC 2 cut(s) 287, 729
BspCNI CTCAG 2 cut(s) 679, 823
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 73
BspT104I TTCGAA 1 cut(s) 1019
BspT107I GGYRCC 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 283
BsrI ACTGG 2 cut(s) 388, 678
BssAI RCCGGY 1 cut(s) 283
BssECI CCNNGG 3 cut(s) 541, 737, 787
BssMI GATC 2 cut(s) 301, 1008
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 787
Bst2UI CCWGG 2 cut(s) 289, 542
Bst4CI ACNGT 1 cut(s) 252
Bst6I CTCTTC 2 cut(s) 161, 251
BstACI GRCGYC 1 cut(s) 72
BstBI TTCGAA 1 cut(s) 1019
BstC8I GCNNGC 2 cut(s) 281, 285
BstDEI CTNAG 3 cut(s) 149, 666, 831
BstDSI CCRYGG 1 cut(s) 737
BstF5I GGATG 5 cut(s) 10, 52, 244, 588, 596
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 2 cut(s) 304, 1011
BstMAI GTCTC 2 cut(s) 305, 712
BstMBI GATC 2 cut(s) 301, 1008
BstNI CCWGG 2 cut(s) 289, 542
BstSCI CCNGG 2 cut(s) 287, 540
BsuRI GGCC 2 cut(s) 287, 729
BtgI CCRYGG 1 cut(s) 737
BtsCI GGATG 5 cut(s) 10, 52, 244, 588, 596
Cac8I GCNNGC 2 cut(s) 281, 285
CaiI CAGNNNCTG 2 cut(s) 673, 731
CciI TCATGA 1 cut(s) 370
CfoI GCGC 1 cut(s) 74
Cfr10I RCCGGY 1 cut(s) 283
Cfr13I GGNCC 2 cut(s) 631, 728
Csp6I GTAC 2 cut(s) 734, 1004
CviAII CATG 2 cut(s) 371, 1012
CviQI GTAC 2 cut(s) 734, 1004
DdeI CTNAG 3 cut(s) 149, 666, 831
DinI GGCGCC 1 cut(s) 73
DpnI GATC 2 cut(s) 303, 1010
DpnII GATC 2 cut(s) 301, 1008
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 2 cut(s) 161, 251
EarI CTCTTC 2 cut(s) 161, 251
Ecl136II GAGCTC 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 787
Eco24I GRGCYC 2 cut(s) 185, 881
Eco47I GGWCC 1 cut(s) 631
Eco53kI GAGCTC 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 874
EcoICRI GAGCTC 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 728
EcoRI GAATTC 1 cut(s) 524
EcoRII CCWGG 2 cut(s) 287, 540
EcoT14I CCWWGG 1 cut(s) 787
EcoT38I GRGCYC 2 cut(s) 185, 881
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 787
Esp3I CGTCTC 1 cut(s) 305
FaeI CATG 2 cut(s) 374, 1015
FaqI GGGAC 1 cut(s) 367
FatI CATG 2 cut(s) 370, 1011
FbaI TGATCA 2 cut(s) 301, 1008
FokI GGATG 5 cut(s) 17, 59, 251, 575, 583
FriOI GRGCYC 2 cut(s) 185, 881
FspBI CTAG 1 cut(s) 1038
GlaI GCGC 1 cut(s) 73
GsuI CTGGAG 1 cut(s) 524
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 2 cut(s) 287, 729
HapII CCGG 1 cut(s) 284
HhaI GCGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 2 cut(s) 374, 1015
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HincII GTYRAC 1 cut(s) 842
HindII GTYRAC 1 cut(s) 842
HindIII AAGCTT 2 cut(s) 20, 105
HinfI GANTC 7 cut(s) 316, 517, 623, 661, 686, 744, 872
HpaII CCGG 1 cut(s) 284
HphI GGTGA 2 cut(s) 214, 668
Hpy166II GTNNAC 2 cut(s) 248, 842
Hpy188I TCNGA 2 cut(s) 832, 862
Hpy188III TCNNGA 7 cut(s) 163, 345, 371, 424, 467, 521, 882
Hpy8I GTNNAC 2 cut(s) 248, 842
HpyAV CCTTC 1 cut(s) 861
HpyCH4III ACNGT 1 cut(s) 252
HpyCH4V TGCA 4 cut(s) 222, 279, 953, 1001
HpyF3I CTNAG 3 cut(s) 149, 666, 831
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 2 cut(s) 374, 1015
HspAI GCGC 1 cut(s) 72
KasI GGCGCC 1 cut(s) 71
KroI GCCGGC 1 cut(s) 283
KroNI GCCGGC 1 cut(s) 285
Ksp22I TGATCA 2 cut(s) 301, 1008
Kzo9I GATC 2 cut(s) 301, 1008
LweI GCATC 2 cut(s) 229, 597
MaeI CTAG 1 cut(s) 1038
MaeIII GTNAC 2 cut(s) 82, 552
MalI GATC 2 cut(s) 303, 1010
MboI GATC 2 cut(s) 301, 1008
MboII GAAGA 7 cut(s) 28, 133, 178, 268, 280, 283, 875
MhlI GDGCHC 3 cut(s) 185, 192, 881
Mly113I GGCGCC 1 cut(s) 72
MlyI GAGTC 2 cut(s) 325, 866
MroNI GCCGGC 1 cut(s) 283
MseI TTAA 2 cut(s) 36, 141
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 2 cut(s) 289, 542
MvaI CCWGG 2 cut(s) 289, 542
NaeI GCCGGC 1 cut(s) 285
NarI GGCGCC 1 cut(s) 72
NdeII GATC 2 cut(s) 301, 1008
NgoMIV GCCGGC 1 cut(s) 283
NlaIII CATG 2 cut(s) 374, 1015
NlaIV GGNNCC 1 cut(s) 73
NmuCI GTSAC 1 cut(s) 552
NspV TTCGAA 1 cut(s) 1019
PagI TCATGA 1 cut(s) 370
PcsI WCGNNNNNNNCGW 1 cut(s) 134
PdiI GCCGGC 1 cut(s) 285
PfeI GAWTC 5 cut(s) 517, 623, 661, 686, 744
PleI GAGTC 2 cut(s) 324, 866
PluTI GGCGCC 1 cut(s) 75
PpsI GAGTC 2 cut(s) 324, 866
PshBI ATTAAT 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 185
Psp6I CCWGG 2 cut(s) 287, 540
PspGI CCWGG 2 cut(s) 287, 540
PspN4I GGNNCC 1 cut(s) 73
PspPI GGNCC 2 cut(s) 631, 728
PstNI CAGNNNCTG 2 cut(s) 673, 731
RsaI GTAC 2 cut(s) 735, 1005
RsaNI GTAC 2 cut(s) 734, 1004
SacI GAGCTC 1 cut(s) 185
SaqAI TTAA 2 cut(s) 36, 141
Sau3AI GATC 2 cut(s) 301, 1008
Sau96I GGNCC 2 cut(s) 631, 728
ScaI AGTACT 1 cut(s) 1005
SchI GAGTC 2 cut(s) 325, 866
ScrFI CCNGG 2 cut(s) 289, 542
SduI GDGCHC 3 cut(s) 185, 192, 881
SfaNI GCATC 2 cut(s) 229, 597
SfoI GGCGCC 1 cut(s) 73
SfuI TTCGAA 1 cut(s) 1019
SinI GGWCC 1 cut(s) 631
SmlI CTYRAG 2 cut(s) 493, 601
SmoI CTYRAG 2 cut(s) 493, 601
SsiI CCGC 1 cut(s) 798
SspDI GGCGCC 1 cut(s) 71
SspMI CTAG 1 cut(s) 1038
SstI GAGCTC 1 cut(s) 185
StyD4I CCNGG 2 cut(s) 287, 540
StyI CCWWGG 1 cut(s) 787
TaaI ACNGT 1 cut(s) 252
TaqI TCGA 4 cut(s) 162, 466, 684, 1019
TatI WGTACW 1 cut(s) 1003
TfiI GAWTC 5 cut(s) 517, 623, 661, 686, 744
Tru1I TTAA 2 cut(s) 36, 141
Tru9I TTAA 2 cut(s) 36, 141
TseFI GTSAC 1 cut(s) 552
Tsp45I GTSAC 1 cut(s) 552
TspDTI ATGAA 4 cut(s) 387, 517, 762, 976
VpaK11BI GGWCC 1 cut(s) 631
VspI ATTAAT 1 cut(s) 141
XapI RAATTY 4 cut(s) 503, 524, 826, 902
XspI CTAG 1 cut(s) 1038
ZrmI AGTACT 1 cut(s) 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.