Rh1CG165600

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000530
Physical Location & Seq
Forward (+)
36451618 .. 36454708
3091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG165600.1

Sequence Viewer

Length: 510 bp
ATGTCACTCAATCTCTCAGCCACTAATTTTTCCATAAACCTGCCTTCTTTGATAGAAAGGTTTCATTCACTGAAAGAGTTGGATTTGAGTTCATGCAATATTTCAAAAGGTCCAGTACCATTTTCACTTGGTAATCTTAGAGATCTCATCTATTTGGACCTTTCACATAATAAGTTTAATGGTCAAGTACCATTGTCACTTGGTAATCTTAGGGATCTCATCTATTTGGACCTTTCATATAATAAGTTTAATGGTCAAATCCCTACTGCTACGTTGAGTCTGCACACCAGGTGCTTGACGAAATGCCTGCCATGGAATTTGTGCCCGTTTTGGGTTCCAAGAGAGTGTCTGGTGACTACATATACCGTATTGATGGATGGGTATGTGAAGCAGGGGAAGCTTGTTGAGGCTATTAACGTTATGGATGAGATGGAGGATAATGGGGAGGTTGGCGCCAATGAGGTTACGTATGGGGTTATGATTGAAGCTTATTGTAAGGAGAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

169

Amino Acids

19.04

Weight (kDa)

5.59

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 8 - 95 5.7e-08 Leucine-rich repeat region
PPR_2 PF13041 118 - 166 2.7e-12 PPR repeat family
PPR PF01535 120 - 148 6.4e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000530)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca FvH4_7g08341 FvH4_7g08360
malus_domestica MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica Prupe.2G106500_v2.0.a1
pyrus_communis pycom02g20040
rosa_chinensis RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 48
AccB1I GGYRCC 1 cut(s) 452
AclI AACGTT 1 cut(s) 417
AclWI GGATC 1 cut(s) 222
AcsI RAATTY 1 cut(s) 316
AcyI GRCGYC 1 cut(s) 453
AdeI CACNNNGTG 1 cut(s) 291
AfaI GTAC 2 cut(s) 117, 189
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 2 cut(s) 105, 485
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 2 cut(s) 400, 488
AluI AGCT 2 cut(s) 400, 488
AlwI GGATC 1 cut(s) 222
ApoI RAATTY 1 cut(s) 316
Asp700I GAANNNNTTC 1 cut(s) 60
AspLEI GCGC 1 cut(s) 455
AspS9I GGNCC 3 cut(s) 110, 157, 229
AsuHPI GGTGA 1 cut(s) 364
AvaII GGWCC 3 cut(s) 110, 157, 229
BaeGI GKGCMC 1 cut(s) 326
BanI GGYRCC 1 cut(s) 452
BccI CCATC 3 cut(s) 367, 371, 424
BcgI CGANNNNNNTGC 2 cut(s) 289, 323
BciT130I CCWGG 1 cut(s) 289
BfoI RGCGCY 1 cut(s) 456
BfuAI ACCTGC 1 cut(s) 48
BglII AGATCT 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 289
Bme18I GGWCC 3 cut(s) 110, 157, 229
BmgT120I GGNCC 3 cut(s) 110, 157, 229
BmiI GGNNCC 2 cut(s) 336, 454
BmrFI CCNGG 1 cut(s) 289
BsaAI YACGTR 1 cut(s) 468
BsaHI GRCGYC 1 cut(s) 453
BsaJI CCNNGG 1 cut(s) 311
BsaXI ACNNNNNCTCC 1 cut(s) 491
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse1I ACTGG 1 cut(s) 113
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 1 cut(s) 311
BseGI GGATG 2 cut(s) 382, 430
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 113
BseSI GKGCMC 1 cut(s) 326
BsgI GTGCAG 1 cut(s) 266
BshNI GGYRCC 1 cut(s) 452
BslI CCNNNNNNNGG 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 326
Bsp143I GATC 2 cut(s) 142, 214
Bsp19I CCATGG 1 cut(s) 311
BspCNI CTCAG 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 336, 454
BspMI ACCTGC 1 cut(s) 48
BspPI GGATC 1 cut(s) 222
BspT107I GGYRCC 1 cut(s) 452
BsrI ACTGG 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 311
BssMI GATC 2 cut(s) 142, 214
BssNI GRCGYC 1 cut(s) 453
BssT1I CCWWGG 1 cut(s) 311
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 367
BstACI GRCGYC 1 cut(s) 453
BstBAI YACGTR 1 cut(s) 468
BstC8I GCNNGC 1 cut(s) 308
BstDEI CTNAG 3 cut(s) 16, 137, 209
BstDSI CCRYGG 1 cut(s) 311
BstF5I GGATG 2 cut(s) 382, 430
BstH2I RGCGCY 1 cut(s) 456
BstHHI GCGC 1 cut(s) 455
BstKTI GATC 2 cut(s) 145, 217
BstMBI GATC 2 cut(s) 142, 214
BstMWI GCNNNNNNNGC 1 cut(s) 397
BstNI CCWGG 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 287
BstSLI GKGCMC 1 cut(s) 326
BstSNI TACGTA 1 cut(s) 468
BstX2I RGATCY 2 cut(s) 142, 214
BstYI RGATCY 2 cut(s) 142, 214
BtgI CCRYGG 1 cut(s) 311
BtsCI GGATG 2 cut(s) 382, 430
BtsIMutI CAGTG 1 cut(s) 68
BveI ACCTGC 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 308
CfoI GCGC 1 cut(s) 455
Cfr13I GGNCC 3 cut(s) 110, 157, 229
CsiI ACCWGGT 1 cut(s) 287
Csp6I GTAC 2 cut(s) 116, 188
CviAII CATG 2 cut(s) 93, 312
CviJI RGCY 4 cut(s) 20, 400, 410, 488
CviKI_1 RGCY 4 cut(s) 20, 400, 410, 488
CviQI GTAC 2 cut(s) 116, 188
DdeI CTNAG 3 cut(s) 16, 137, 209
DinI GGCGCC 1 cut(s) 454
DpnI GATC 2 cut(s) 144, 216
DpnII GATC 2 cut(s) 142, 214
DraIII CACNNNGTG 1 cut(s) 291
Eco105I TACGTA 1 cut(s) 468
Eco130I CCWWGG 1 cut(s) 311
Eco47I GGWCC 3 cut(s) 110, 157, 229
EcoRII CCWGG 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 311
EgeI GGCGCC 1 cut(s) 454
EheI GGCGCC 1 cut(s) 454
ErhI CCWWGG 1 cut(s) 311
FaeI CATG 2 cut(s) 96, 315
FatI CATG 2 cut(s) 92, 311
FokI GGATG 2 cut(s) 389, 437
GlaI GCGC 1 cut(s) 454
HaeII RGCGCY 1 cut(s) 456
HhaI GCGC 1 cut(s) 455
Hin1I GRCGYC 1 cut(s) 453
Hin1II CATG 2 cut(s) 96, 315
Hin6I GCGC 1 cut(s) 453
HinP1I GCGC 1 cut(s) 453
HindIII AAGCTT 2 cut(s) 398, 486
HinfI GANTC 1 cut(s) 277
HphI GGTGA 1 cut(s) 364
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 3 cut(s) 272, 417, 467
HpyCH4V TGCA 2 cut(s) 96, 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 397
HpyF3I CTNAG 3 cut(s) 16, 137, 209
HpySE526I ACGT 3 cut(s) 272, 417, 467
Hsp92I GRCGYC 1 cut(s) 453
Hsp92II CATG 2 cut(s) 96, 315
HspAI GCGC 1 cut(s) 453
KasI GGCGCC 1 cut(s) 452
Kzo9I GATC 2 cut(s) 142, 214
LpnPI CCDG 7 cut(s) 53, 126, 274, 301, 320, 335, 377
MabI ACCWGGT 1 cut(s) 287
MaeII ACGT 3 cut(s) 272, 417, 467
MaeIII GTNAC 4 cut(s) 3, 195, 352, 463
MalI GATC 2 cut(s) 144, 216
MboI GATC 2 cut(s) 142, 214
MflI RGATCY 2 cut(s) 142, 214
MhlI GDGCHC 1 cut(s) 326
MluCI AATT 2 cut(s) 25, 316
Mly113I GGCGCC 1 cut(s) 453
MlyI GAGTC 1 cut(s) 286
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 4 cut(s) 400, 427, 439, 454
MroXI GAANNNNTTC 1 cut(s) 60
MseI TTAA 3 cut(s) 177, 249, 414
MspR9I CCNGG 1 cut(s) 289
MvaI CCWGG 1 cut(s) 289
MwoI GCNNNNNNNGC 1 cut(s) 397
NarI GGCGCC 1 cut(s) 453
NcoI CCATGG 1 cut(s) 311
NdeII GATC 2 cut(s) 142, 214
NlaIII CATG 2 cut(s) 96, 315
NlaIV GGNNCC 2 cut(s) 336, 454
NmuCI GTSAC 3 cut(s) 3, 195, 352
PdmI GAANNNNTTC 1 cut(s) 60
PleI GAGTC 1 cut(s) 285
PluTI GGCGCC 1 cut(s) 456
PpsI GAGTC 1 cut(s) 285
Ppu21I YACGTR 1 cut(s) 468
Psp1406I AACGTT 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 2 cut(s) 336, 454
PspPI GGNCC 3 cut(s) 110, 157, 229
PsuI RGATCY 2 cut(s) 142, 214
RsaI GTAC 2 cut(s) 117, 189
RsaNI GTAC 2 cut(s) 116, 188
SaqAI TTAA 3 cut(s) 177, 249, 414
Sau3AI GATC 2 cut(s) 142, 214
Sau96I GGNCC 3 cut(s) 110, 157, 229
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 1 cut(s) 289
SduI GDGCHC 1 cut(s) 326
SexAI ACCWGGT 1 cut(s) 287
SfoI GGCGCC 1 cut(s) 454
SinI GGWCC 3 cut(s) 110, 157, 229
SnaBI TACGTA 1 cut(s) 468
Sse9I AATT 2 cut(s) 25, 316
SspDI GGCGCC 1 cut(s) 452
SspI AATATT 1 cut(s) 100
StyD4I CCNGG 1 cut(s) 287
StyI CCWWGG 1 cut(s) 311
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 3 cut(s) 275, 420, 470
TasI AATT 2 cut(s) 25, 316
Tru1I TTAA 3 cut(s) 177, 249, 414
Tru9I TTAA 3 cut(s) 177, 249, 414
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 3 cut(s) 3, 195, 352
Tsp45I GTSAC 3 cut(s) 3, 195, 352
TspDTI ATGAA 3 cut(s) 53, 81, 225
TspRI CASTG 1 cut(s) 75
VpaK11BI GGWCC 3 cut(s) 110, 157, 229
XapI RAATTY 1 cut(s) 316
XmnI GAANNNNTTC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.