Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Forward (+)

33886380 .. 33889761

Gene Structure 3382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG177800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1608 bp

ATGCTGCTTCGCCGGAACCTCTCCCCCAAACCCTTCTCTCTCCTCCACTCAATCACCGCCGTCCCCTTCTCCACCTCCACCTCCGCCGCCGTCGATTTCCTCCCCTCCTACACCGTCACCCCTCCAATCCAAGACTGGCCCCACCACCTCCACCCAAAGCGCCTCATCTCCCTCATCACCCGCGAGCCCAAACTCGACGTCGCCCTCCAAATCTTCCACCACGCCTCCAAATACCACCCCGGATTCCACCATAACTACCACACCTGCCACGCCATCATCCGCCGCCTCCTCCGCTCCCGCGCTTTTCACCTCATCGACCCCCTCCTCTCCGACCTCCGCGCCTCCAATCTCCGATGCAGCGAAGACCTCTTCATCTCCCTAATCCGCAATTACGGCGTCGTTTCACGCCCTAAACTCGCCTTCAAGACATTTATCACCATTCCGAAATTCGGCGTCCGGCGATCCGTGAGGTCGTTGAATGCGTTGCTGAACGCTTTGGTTCAGAATCACGAGTATAGATTGGTTCACTCGGTGTTTCGGAACTGTAGGGAGAGGTTCGGGGTGGCGCCGAATGTGTTTAGTTGTAATATATTGATCAAAGCACTGTGTAAGAGAAATGATTTTGAGACTGCACACCAGGTGCTCGATGAAATGCCTGCAATGGGATTTGTGCCCAATGTGGTGACTTTTACTACCATTTTGGGTGGTTATGTTTCGCGGCGCGATATGGTTGGTGCCAAGAGGGTGTTTGGTGAGATTTTGGACAGAGGGTGGTGTCCTGATGTGACTACATATACCATATTGATGGATGGGTATGTGAAGCAGGGGAAGCTGGTTGAGGCTATTAAGGTTATGGATGAGATGGAGGATAATGGGATTGGCGCCAATGAGGTTACTTATGGAGTTATGATTGAAGGTTATTGTAAGGAAAAGAAGTCGGGCGAAGCGGTTAATTTGCTTGATGATATGGTGGAGAAGAGGTATATACCGAGCTCGGCACTCTGTTGTAAGGTGATTGATGTTTTGTGTTGCGAAGGGAAGGTGGAGGATGCTTGTGAACTGTGGAAGAGGCTTTTGAAGAAGAATTGCATGCCAGATAATGCAGTACTGGGCACACTCATATACTGGCTTTGTAAGAAGGGAGAAGTATGGGAAGCCAGGAAATTGTTTGATCAGTTTGAGACGAGTGAGCCTCCGGATGTCATGACTTACAATGTGCTTATTTCTGAATTGTGTGAAGTGGGGGAGTTGTGTGAGGCAGGGAGGTTGTGGGATGACATGGTGGAGAAAGGATGGTCTCCGAATTCTTTTACATTTAATGTATTGATCAAAGGATTCTGTAAGATTGGAAAAGCGAAGGAGGGAATTAGGATTTTGGACGAGATGTTCGAAAAAGGCTATTTGCCAAACAATTCTACTTATGCTATGTTGATTGAGGGGCTCTGTGACTCGGGAGAGGAAGCTGAAATGGCTAGAGTAATATCTATGGCAATGTCAATTGGAGACATTGACAGTGATTCCTGGGATCTTTTCCTTACTAAGGTTGTTGGTGATTTGGATTCTGGGGAAAGTGTTTTAAACAGAATACTGCTGGAGAATGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

535

Amino Acids

60.55

Weight (kDa)

6.34

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	155 - 203	3e-06	PPR repeat family
PPR_3	PF13812	178 - 239	4.6e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	187 - 218	1.6e-07	PPR repeat
PPR_2	PF13041	190 - 238	8.7e-15	PPR repeat family
PPR_2	PF13041	225 - 274	7.5e-13	PPR repeat family
PPR_3	PF13812	249 - 307	1.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	257 - 289	2.6e-09	PPR repeat
PPR_2	PF13041	260 - 309	7.3e-17	PPR repeat family
PPR	PF01535	264 - 293	2.6e-08	PPR repeat
PPR_1	PF12854	292 - 324	3.4e-07	PPR repeat
PPR_2	PF13041	296 - 332	2.9e-07	PPR repeat family
PPR	PF01535	298 - 327	1.5e-06	PPR repeat
PPR_1	PF12854	361 - 392	8.7e-06	PPR repeat
PPR_1	PF12854	399 - 428	1.5e-06	PPR repeat
PPR_2	PF13041	399 - 448	8.8e-18	PPR repeat family
PPR_3	PF13812	399 - 446	1e-05	Pentatricopeptide repeat domain
PPR_3	PF13812	422 - 479	9.9e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	430 - 462	4.1e-09	PPR repeat
PPR	PF01535	437 - 466	1.3e-06	PPR repeat
PPR_2	PF13041	438 - 483	1.2e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	272
AatII	GACGTC	1 cut(s)	201
Acc36I	ACCTGC	1 cut(s)	272
AccB1I	GGYRCC	3 cut(s)	565, 734, 881
AccBSI	CCGCTC	1 cut(s)	294
AccII	CGCG	5 cut(s)	183, 300, 339, 718, 723
AccIII	TCCGGA	1 cut(s)	1195
AclWI	GGATC	2 cut(s)	456, 1533
AcsI	RAATTY	2 cut(s)	446, 1303
AcyI	GRCGYC	5 cut(s)	198, 396, 453, 566, 882
AdeI	CACNNNGTG	2 cut(s)	532, 640
AfaI	GTAC	1 cut(s)	1107
AfiI	CCNNNNNNNGG	3 cut(s)	449, 662, 1540
AgsI	TTSAA	4 cut(s)	424, 478, 914, 1078
AjnI	CCWGG	3 cut(s)	636, 1157, 1520
AloI	GAACNNNNNNTCC	2 cut(s)	1370, 1402
AluBI	AGCT	3 cut(s)	832, 993, 1463
AluI	AGCT	3 cut(s)	832, 993, 1463
Alw21I	GWGCWC	2 cut(s)	645, 995
Alw26I	GTCTC	4 cut(s)	620, 1175, 1302, 1497
AlwI	GGATC	2 cut(s)	456, 1533
Ama87I	CYCGRG	1 cut(s)	1450
Aor13HI	TCCGGA	1 cut(s)	1195
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	2 cut(s)	4, 357
ApoI	RAATTY	2 cut(s)	446, 1303
ArsI	GACNNNNNNTTYG	4 cut(s)	183, 215, 1370, 1402
AspLEI	GCGC	6 cut(s)	162, 302, 341, 568, 723, 884
AspS9I	GGNCC	1 cut(s)	138
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	9 cut(s)	46, 109, 169, 299, 427, 694, 764, 1024, 1562
AsuII	TTCGAA	1 cut(s)	1389
AvaI	CYCGRG	1 cut(s)	1450
BaeGI	GKGCMC	2 cut(s)	675, 1115
BanI	GGYRCC	3 cut(s)	565, 734, 881
BanII	GRGCYC	3 cut(s)	189, 995, 1443
BauI	CACGAG	1 cut(s)	509
BbsI	GAAGAC	1 cut(s)	369
Bbv12I	GWGCWC	2 cut(s)	645, 995
BbvI	GCAGC	1 cut(s)	369
BccI	CCATC	5 cut(s)	281, 799, 803, 856, 1287
BceAI	ACGGC	3 cut(s)	44, 74, 409
BciT130I	CCWGG	3 cut(s)	638, 1159, 1522
BclI	TGATCA	3 cut(s)	594, 1171, 1326
BcnI	CCSGG	1 cut(s)	240
BcoDI	GTCTC	4 cut(s)	620, 1175, 1302, 1497
BfaI	CTAG	1 cut(s)	1473
BfmI	CTRYAG	1 cut(s)	544
BfoI	RGCGCY	3 cut(s)	163, 569, 885
BfuAI	ACCTGC	1 cut(s)	272
BisI	GCNGC	5 cut(s)	5, 87, 283, 358, 719
BlsI	GCNGC	5 cut(s)	6, 88, 284, 359, 720
BmcAI	AGTACT	1 cut(s)	1107
Bme1390I	CCNGG	4 cut(s)	240, 638, 1159, 1522
BmeT110I	CYCGRG	1 cut(s)	1450
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	5 cut(s)	17, 140, 567, 736, 883
BmrFI	CCNGG	4 cut(s)	240, 638, 1159, 1522
BmrI	ACTGGG	1 cut(s)	1118
BmsI	GCATC	2 cut(s)	344, 1039
BmuI	ACTGGG	1 cut(s)	1118
BpiI	GAAGAC	1 cut(s)	369
BplI	GAGNNNNNCTC	2 cut(s)	1177, 1209
Bpu14I	TTCGAA	1 cut(s)	1389
BpuMI	CCSGG	1 cut(s)	240
BsaHI	GRCGYC	5 cut(s)	198, 396, 453, 566, 882
BsaI	GGTCTC	1 cut(s)	1302
BsaJI	CCNNGG	2 cut(s)	238, 1521
BsaWI	WCCGGW	1 cut(s)	1195
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 239, 965, 995
Bsc4I	CCNNNNNNNGG	3 cut(s)	449, 662, 1540
Bse1I	ACTGG	3 cut(s)	140, 1113, 1130
Bse3DI	GCAATG	2 cut(s)	666, 1497
BseAI	TCCGGA	1 cut(s)	1195
BseBI	CCWGG	3 cut(s)	638, 1159, 1522
BseDI	CCNNGG	2 cut(s)	238, 1521
BseGI	GGATG	7 cut(s)	276, 814, 862, 1054, 1204, 1279, 1298
BseLI	CCNNNNNNNGG	3 cut(s)	449, 662, 1540
BseMI	GCAATG	2 cut(s)	666, 1497
BseNI	ACTGG	3 cut(s)	140, 1113, 1130
BseRI	GAGGAG	3 cut(s)	32, 278, 314
BseSI	GKGCMC	2 cut(s)	675, 1115
BseXI	GCAGC	1 cut(s)	369
BsgI	GTGCAG	1 cut(s)	615
Bsh1236I	CGCG	5 cut(s)	183, 300, 339, 718, 723
BshFI	GGCC	1 cut(s)	139
BshNI	GGYRCC	3 cut(s)	565, 734, 881
BsiHKAI	GWGCWC	2 cut(s)	645, 995
BsiHKCI	CYCGRG	1 cut(s)	1450
BsiSI	CCGG	4 cut(s)	13, 240, 457, 1196
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	3 cut(s)	449, 662, 1540
BsmAI	GTCTC	4 cut(s)	620, 1175, 1302, 1497
BsmBI	CGTCTC	1 cut(s)	1175
BsmFI	GGGAC	1 cut(s)	47
BsmI	GAATGC	2 cut(s)	484, 1603
BsnI	GGCC	1 cut(s)	139
Bso31I	GGTCTC	1 cut(s)	1302
BsoBI	CYCGRG	1 cut(s)	1450
Bsp119I	TTCGAA	1 cut(s)	1389
Bsp1286I	GDGCHC	6 cut(s)	189, 645, 675, 995, 1115, 1443
Bsp13I	TCCGGA	1 cut(s)	1195
Bsp143I	GATC	5 cut(s)	461, 594, 1171, 1326, 1525
BspANI	GGCC	1 cut(s)	139
BspEI	TCCGGA	1 cut(s)	1195
BspFNI	CGCG	5 cut(s)	183, 300, 339, 718, 723
BspHI	TCATGA	1 cut(s)	1203
BspLI	GGNNCC	5 cut(s)	17, 140, 567, 736, 883
BspMI	ACCTGC	1 cut(s)	272
BspPI	GGATC	2 cut(s)	456, 1533
BspT104I	TTCGAA	1 cut(s)	1389
BspT107I	GGYRCC	3 cut(s)	565, 734, 881
BspTNI	GGTCTC	1 cut(s)	1302
BsrBI	CCGCTC	1 cut(s)	294
BsrDI	GCAATG	2 cut(s)	666, 1497
BsrI	ACTGG	3 cut(s)	140, 1113, 1130
BssECI	CCNNGG	2 cut(s)	238, 1521
BssMI	GATC	5 cut(s)	461, 594, 1171, 1326, 1525
BssNI	GRCGYC	5 cut(s)	198, 396, 453, 566, 882
BssSI	CACGAG	1 cut(s)	509
Bst2BI	CACGAG	1 cut(s)	509
Bst2UI	CCWGG	3 cut(s)	638, 1159, 1522
Bst4CI	ACNGT	5 cut(s)	115, 545, 606, 1062, 1514
Bst6I	CTCTTC	3 cut(s)	374, 971, 1061
BstACI	GRCGYC	5 cut(s)	198, 396, 453, 566, 882
BstBI	TTCGAA	1 cut(s)	1389
BstC8I	GCNNGC	3 cut(s)	185, 657, 1091
BstDEI	CTNAG	1 cut(s)	1539
BstENI	CCTNNNNNAGG	1 cut(s)	1538
BstF5I	GGATG	7 cut(s)	276, 814, 862, 1054, 1204, 1279, 1298
BstFNI	CGCG	5 cut(s)	183, 300, 339, 718, 723
BstH2I	RGCGCY	3 cut(s)	163, 569, 885
BstHHI	GCGC	6 cut(s)	162, 302, 341, 568, 723, 884
BstKTI	GATC	5 cut(s)	464, 597, 1174, 1329, 1528
BstMAI	GTCTC	4 cut(s)	620, 1175, 1302, 1497
BstMBI	GATC	5 cut(s)	461, 594, 1171, 1326, 1525
BstMWI	GCNNNNNNNGC	4 cut(s)	291, 393, 829, 1469
BstNI	CCWGG	3 cut(s)	638, 1159, 1522
BstNSI	RCATGY	1 cut(s)	1093
BstSCI	CCNGG	4 cut(s)	238, 636, 1157, 1520
BstSFI	CTRYAG	1 cut(s)	544
BstSLI	GKGCMC	2 cut(s)	675, 1115
BstUI	CGCG	5 cut(s)	183, 300, 339, 718, 723
BstV1I	GCAGC	1 cut(s)	369
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	1 cut(s)	1525
BstXI	CCANNNNNNTGG	1 cut(s)	805
BstYI	RGATCY	1 cut(s)	1525
BsuRI	GGCC	1 cut(s)	139
BtsCI	GGATG	7 cut(s)	276, 814, 862, 1054, 1204, 1279, 1298
BtsIMutI	CAGTG	2 cut(s)	602, 1519
BveI	ACCTGC	1 cut(s)	272
Cac8I	GCNNGC	3 cut(s)	185, 657, 1091
CciI	TCATGA	1 cut(s)	1203
CfoI	GCGC	6 cut(s)	162, 302, 341, 568, 723, 884
Cfr13I	GGNCC	1 cut(s)	138
CseI	GACGC	2 cut(s)	385, 442
CsiI	ACCWGGT	1 cut(s)	636
Csp6I	GTAC	1 cut(s)	1106
CviAII	CATG	3 cut(s)	1090, 1204, 1279
CviQI	GTAC	1 cut(s)	1106
DdeI	CTNAG	1 cut(s)	1539
DinI	GGCGCC	2 cut(s)	567, 883
DpnI	GATC	5 cut(s)	463, 596, 1173, 1328, 1527
DpnII	GATC	5 cut(s)	461, 594, 1171, 1326, 1525
DraI	TTTAAA	1 cut(s)	1578
DraIII	CACNNNGTG	2 cut(s)	532, 640
Eam1104I	CTCTTC	3 cut(s)	374, 971, 1061
EarI	CTCTTC	3 cut(s)	374, 971, 1061
EciI	GGCGGA	2 cut(s)	73, 269
Ecl136II	GAGCTC	1 cut(s)	993
Eco24I	GRGCYC	3 cut(s)	189, 995, 1443
Eco31I	GGTCTC	1 cut(s)	1302
Eco53kI	GAGCTC	1 cut(s)	993
Eco88I	CYCGRG	1 cut(s)	1450
EcoICRI	GAGCTC	1 cut(s)	993
EcoNI	CCTNNNNNAGG	1 cut(s)	1538
EcoRI	GAATTC	1 cut(s)	1303
EcoRII	CCWGG	3 cut(s)	636, 1157, 1520
EcoT38I	GRGCYC	3 cut(s)	189, 995, 1443
EgeI	GGCGCC	2 cut(s)	567, 883
EheI	GGCGCC	2 cut(s)	567, 883
Esp3I	CGTCTC	1 cut(s)	1175
FaeI	CATG	3 cut(s)	1093, 1207, 1282
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	3 cut(s)	1089, 1203, 1278
FauI	CCCGC	2 cut(s)	188, 305
FbaI	TGATCA	3 cut(s)	594, 1171, 1326
Fnu4HI	GCNGC	5 cut(s)	5, 87, 283, 358, 719
FokI	GGATG	7 cut(s)	263, 821, 869, 1061, 1211, 1286, 1305
FriOI	GRGCYC	3 cut(s)	189, 995, 1443
Fsp4HI	GCNGC	5 cut(s)	5, 87, 283, 358, 719
FspBI	CTAG	1 cut(s)	1473
GlaI	GCGC	6 cut(s)	161, 301, 340, 567, 722, 883
GluI	GCNGC	5 cut(s)	5, 87, 283, 358, 719
HaeII	RGCGCY	3 cut(s)	163, 569, 885
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	4 cut(s)	13, 240, 457, 1196
HgaI	GACGC	2 cut(s)	385, 442
HhaI	GCGC	6 cut(s)	162, 302, 341, 568, 723, 884
Hin1I	GRCGYC	5 cut(s)	198, 396, 453, 566, 882
Hin1II	CATG	3 cut(s)	1093, 1207, 1282
Hin6I	GCGC	6 cut(s)	160, 300, 339, 566, 721, 882
HinP1I	GCGC	6 cut(s)	160, 300, 339, 566, 721, 882
HinfI	GANTC	6 cut(s)	243, 505, 1335, 1448, 1517, 1559
HpaII	CCGG	4 cut(s)	13, 240, 457, 1196
HphI	GGTGA	9 cut(s)	46, 109, 169, 299, 427, 694, 764, 1024, 1562
Hpy166II	GTNNAC	2 cut(s)	526, 1058
Hpy188I	TCNGA	7 cut(s)	331, 353, 444, 504, 540, 1228, 1302
Hpy188III	TCNNGA	6 cut(s)	424, 509, 779, 1196, 1204, 1452
Hpy8I	GTNNAC	2 cut(s)	526, 1058
Hpy99I	CGWCG	4 cut(s)	95, 200, 203, 401
HpyAV	CCTTC	8 cut(s)	43, 76, 430, 908, 1028, 1033, 1132, 1351
HpyCH4III	ACNGT	5 cut(s)	115, 545, 606, 1062, 1514
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	5 cut(s)	357, 632, 659, 1089, 1103
HpyF10VI	GCNNNNNNNGC	4 cut(s)	291, 393, 829, 1469
HpyF3I	CTNAG	1 cut(s)	1539
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	5 cut(s)	198, 396, 453, 566, 882
Hsp92II	CATG	3 cut(s)	1093, 1207, 1282
HspAI	GCGC	6 cut(s)	160, 300, 339, 566, 721, 882
KasI	GGCGCC	2 cut(s)	565, 881
Kpn2I	TCCGGA	1 cut(s)	1195
Ksp22I	TGATCA	3 cut(s)	594, 1171, 1326
Kzo9I	GATC	5 cut(s)	461, 594, 1171, 1326, 1525
LmnI	GCTCC	1 cut(s)	299
Lsp1109I	GCAGC	1 cut(s)	369
LweI	GCATC	2 cut(s)	344, 1039
MabI	ACCWGGT	1 cut(s)	636
MaeI	CTAG	1 cut(s)	1473
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	5 cut(s)	115, 682, 784, 892, 1445
MalI	GATC	5 cut(s)	463, 596, 1173, 1328, 1527
MbiI	CCGCTC	1 cut(s)	294
MboI	GATC	5 cut(s)	461, 594, 1171, 1326, 1525
MboII	GAAGA	7 cut(s)	205, 361, 374, 988, 1078, 1090, 1093
MfeI	CAATTG	1 cut(s)	1497
MflI	RGATCY	1 cut(s)	1525
MhlI	GDGCHC	6 cut(s)	189, 645, 675, 995, 1115, 1443
Mly113I	GGCGCC	2 cut(s)	566, 882
MlyI	GAGTC	1 cut(s)	1442
MmeI	TCCRAC	1 cut(s)	354
MroI	TCCGGA	1 cut(s)	1195
MseI	TTAA	4 cut(s)	846, 951, 1317, 1577
MslI	CAYNNNNRTG	1 cut(s)	803
MspI	CCGG	4 cut(s)	13, 240, 457, 1196
MspR9I	CCNGG	4 cut(s)	240, 638, 1159, 1522
MunI	CAATTG	1 cut(s)	1497
Mva1269I	GAATGC	2 cut(s)	484, 1603
MvaI	CCWGG	3 cut(s)	638, 1159, 1522
MvnI	CGCG	5 cut(s)	183, 300, 339, 718, 723
MwoI	GCNNNNNNNGC	4 cut(s)	291, 393, 829, 1469
NarI	GGCGCC	2 cut(s)	566, 882
NciI	CCSGG	1 cut(s)	240
NdeII	GATC	5 cut(s)	461, 594, 1171, 1326, 1525
NlaIII	CATG	3 cut(s)	1093, 1207, 1282
NlaIV	GGNNCC	5 cut(s)	17, 140, 567, 736, 883
NmeAIII	GCCGAG	1 cut(s)	974
NmuCI	GTSAC	4 cut(s)	115, 682, 784, 1445
NspI	RCATGY	1 cut(s)	1093
NspV	TTCGAA	1 cut(s)	1389
PaeI	GCATGC	1 cut(s)	1093
PagI	TCATGA	1 cut(s)	1203
PaqCI	CACCTGC	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	2 cut(s)	479, 1386
PctI	GAATGC	2 cut(s)	484, 1603
PfeI	GAWTC	5 cut(s)	243, 505, 1335, 1517, 1559
PkrI	GCNGC	5 cut(s)	6, 88, 284, 359, 720
PleI	GAGTC	1 cut(s)	1442
PluTI	GGCGCC	2 cut(s)	569, 885
PpsI	GAGTC	1 cut(s)	1442
Psp124BI	GAGCTC	1 cut(s)	995
Psp6I	CCWGG	3 cut(s)	636, 1157, 1520
PspGI	CCWGG	3 cut(s)	636, 1157, 1520
PspN4I	GGNNCC	5 cut(s)	17, 140, 567, 736, 883
PspPI	GGNCC	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	1525
RsaI	GTAC	1 cut(s)	1107
RsaNI	GTAC	1 cut(s)	1106
RseI	CAYNNNNRTG	1 cut(s)	803
SacI	GAGCTC	1 cut(s)	995
SaqAI	TTAA	4 cut(s)	846, 951, 1317, 1577
SatI	GCNGC	5 cut(s)	5, 87, 283, 358, 719
Sau3AI	GATC	5 cut(s)	461, 594, 1171, 1326, 1525
Sau96I	GGNCC	1 cut(s)	138
ScaI	AGTACT	1 cut(s)	1107
SchI	GAGTC	1 cut(s)	1442
ScrFI	CCNGG	4 cut(s)	240, 638, 1159, 1522
SduI	GDGCHC	6 cut(s)	189, 645, 675, 995, 1115, 1443
SexAI	ACCWGGT	1 cut(s)	636
SfaNI	GCATC	2 cut(s)	344, 1039
SfcI	CTRYAG	1 cut(s)	544
SfoI	GGCGCC	2 cut(s)	567, 883
SfuI	TTCGAA	1 cut(s)	1389
SmiMI	CAYNNNNRTG	1 cut(s)	803
SphI	GCATGC	1 cut(s)	1093
SspDI	GGCGCC	2 cut(s)	565, 881
SspMI	CTAG	1 cut(s)	1473
SstI	GAGCTC	1 cut(s)	995
StyD4I	CCNGG	4 cut(s)	238, 636, 1157, 1520
TaaI	ACNGT	5 cut(s)	115, 545, 606, 1062, 1514
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	5 cut(s)	93, 195, 315, 645, 1389
TatI	WGTACW	1 cut(s)	1105
TauI	GCSGC	3 cut(s)	89, 285, 721
TfiI	GAWTC	5 cut(s)	243, 505, 1335, 1517, 1559
Tru1I	TTAA	4 cut(s)	846, 951, 1317, 1577
Tru9I	TTAA	4 cut(s)	846, 951, 1317, 1577
TscAI	CASTG	2 cut(s)	609, 1519
TseFI	GTSAC	4 cut(s)	115, 682, 784, 1445
TseI	GCWGC	2 cut(s)	4, 357
Tsp45I	GTSAC	4 cut(s)	115, 682, 784, 1445
TspDTI	ATGAA	2 cut(s)	361, 663
TspGWI	ACGGA	1 cut(s)	454
TspRI	CASTG	2 cut(s)	609, 1519
XagI	CCTNNNNNAGG	1 cut(s)	1538
XapI	RAATTY	2 cut(s)	446, 1303
XceI	RCATGY	1 cut(s)	1093
XcmI	CCANNNNNNNNNTGG	1 cut(s)	132
XspI	CTAG	1 cut(s)	1473
ZraI	GACGTC	1 cut(s)	199
ZrmI	AGTACT	1 cut(s)	1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.