Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001836.1

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Reverse (-)

93086 .. 93622

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001836.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atggggttggcgccaatgaggttacttatggggttatcattgaagcttattgtaaggagaaggaagtcgggcgaagcgattcctttgcttaatgatatggtcgagaagaggtatataccgagctcggtgctctgttgtaaggtgattgatgttttgtgttgcaaaggaaaggtggaggatgcttgtgaactgtggaagaggcttttgaagaagaattgcaagccggccaggaaattgtttgatcagtttgagacgagtgagcccccggatgtcatgacttacaacgtgcttatttctggaatgtgtgaagtgggggagttgtgtgaggcagggaggagaagggatgtgatcaaaggattctgtaagattagaaaagtgaaggagcgaattaggattttggacaagatgttcgaaaatggctgtttgccaaacaagtctacttatgctatgttgattgaggggctctgtgactcgggagaggaagctgaaatcactatagtaatatttatggcaatgtcaagtgggatcttttcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

178

Amino Acids

20.12

Weight (kDa)

8.86

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	10
AccI	GTMKAC	1 cut(s)	437
AclWI	GGATC	1 cut(s)	533
AcoI	YGGCCR	1 cut(s)	225
AcyI	GRCGYC	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	43, 208
AjnI	CCWGG	1 cut(s)	227
AloI	GAACNNNNNNTCC	2 cut(s)	392, 424
AluBI	AGCT	3 cut(s)	46, 123, 485
AluI	AGCT	3 cut(s)	46, 123, 485
Alw21I	GWGCWC	2 cut(s)	125, 132
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	1 cut(s)	533
Ama87I	CYCGRG	1 cut(s)	472
AoxI	GGCC	1 cut(s)	225
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
Asp700I	GAANNNNTTC	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	13
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	154
AsuII	TTCGAA	1 cut(s)	411
AvaI	CYCGRG	1 cut(s)	472
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	3 cut(s)	125, 264, 465
Bbv12I	GWGCWC	2 cut(s)	125, 132
BcgI	CGANNNNNNTGC	4 cut(s)	67, 101, 109, 143
BciT130I	CCWGG	1 cut(s)	229
BclI	TGATCA	2 cut(s)	241, 348
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	495
BfoI	RGCGCY	1 cut(s)	14
Bme1390I	CCNGG	2 cut(s)	229, 266
BmeT110I	CYCGRG	1 cut(s)	472
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	2 cut(s)	229, 266
BmsI	GCATC	1 cut(s)	169
Bpu14I	TTCGAA	1 cut(s)	411
BpuMI	CCSGG	1 cut(s)	266
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	264
Bse118I	RCCGGY	1 cut(s)	223
Bse3DI	GCAATG	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	3 cut(s)	184, 274, 349
BseMI	GCAATG	1 cut(s)	519
BseRI	GAGGAG	1 cut(s)	349
BshFI	GGCC	1 cut(s)	227
BshNI	GGYRCC	1 cut(s)	10
BsiHKAI	GWGCWC	2 cut(s)	125, 132
BsiHKCI	CYCGRG	1 cut(s)	472
BsiSI	CCGG	2 cut(s)	224, 266
BsmAI	GTCTC	1 cut(s)	245
BsmBI	CGTCTC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	227
BsoBI	CYCGRG	1 cut(s)	472
Bsp119I	TTCGAA	1 cut(s)	411
Bsp1286I	GDGCHC	4 cut(s)	125, 132, 264, 465
Bsp143I	GATC	3 cut(s)	241, 348, 525
BspANI	GGCC	1 cut(s)	227
BspHI	TCATGA	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	12
BspPI	GGATC	1 cut(s)	533
BspT104I	TTCGAA	1 cut(s)	411
BspT107I	GGYRCC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	519
BsrFI	RCCGGY	1 cut(s)	223
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	3 cut(s)	241, 348, 525
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	2 cut(s)	101, 191
BstACI	GRCGYC	1 cut(s)	11
BstBI	TTCGAA	1 cut(s)	411
BstC8I	GCNNGC	2 cut(s)	221, 225
BstF5I	GGATG	3 cut(s)	184, 274, 349
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	3 cut(s)	244, 351, 528
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	3 cut(s)	241, 348, 525
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	2 cut(s)	227, 264
BstSFI	CTRYAG	1 cut(s)	495
BstX2I	RGATCY	1 cut(s)	525
BstYI	RGATCY	1 cut(s)	525
BsuRI	GGCC	1 cut(s)	227
BtsCI	GGATG	3 cut(s)	184, 274, 349
Cac8I	GCNNGC	2 cut(s)	221, 225
CciI	TCATGA	1 cut(s)	273
CfoI	GCGC	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	223
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	9 cut(s)	46, 123, 202, 223, 227, 262, 420, 463, 485
CviKI_1	RGCY	9 cut(s)	46, 123, 202, 223, 227, 262, 420, 463, 485
DinI	GGCGCC	1 cut(s)	12
DpnI	GATC	3 cut(s)	243, 350, 527
DpnII	GATC	3 cut(s)	241, 348, 525
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	2 cut(s)	101, 191
EarI	CTCTTC	2 cut(s)	101, 191
Ecl136II	GAGCTC	1 cut(s)	123
Eco24I	GRGCYC	3 cut(s)	125, 264, 465
Eco53kI	GAGCTC	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	472
EcoICRI	GAGCTC	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	227
EcoT38I	GRGCYC	3 cut(s)	125, 264, 465
EgeI	GGCGCC	1 cut(s)	12
EheI	GGCGCC	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	1 cut(s)	277
FaiI	YATR	9 cut(s)	29, 98, 114, 116, 275, 444, 449, 497, 509
FatI	CATG	1 cut(s)	273
FbaI	TGATCA	2 cut(s)	241, 348
FblI	GTMKAC	1 cut(s)	437
FokI	GGATG	3 cut(s)	191, 281, 356
FriOI	GRGCYC	3 cut(s)	125, 264, 465
GlaI	GCGC	1 cut(s)	12
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	2 cut(s)	224, 266
HhaI	GCGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	277
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	3 cut(s)	79, 357, 470
HpaII	CCGG	2 cut(s)	224, 266
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	2 cut(s)	188, 438
Hpy188III	TCNNGA	5 cut(s)	103, 274, 297, 474, 534
Hpy8I	GTNNAC	2 cut(s)	188, 438
HpyAV	CCTTC	3 cut(s)	54, 333, 373
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	2 cut(s)	162, 219
HpySE526I	ACGT	1 cut(s)	285
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	277
HspAI	GCGC	1 cut(s)	11
KasI	GGCGCC	1 cut(s)	10
KroI	GCCGGC	1 cut(s)	223
KroNI	GCCGGC	1 cut(s)	225
Ksp22I	TGATCA	2 cut(s)	241, 348
Kzo9I	GATC	3 cut(s)	241, 348, 525
LmnI	GCTCC	1 cut(s)	382
LpnPI	CCDG	6 cut(s)	214, 237, 241, 279, 282, 315
LweI	GCATC	1 cut(s)	169
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	2 cut(s)	21, 467
MalI	GATC	3 cut(s)	243, 350, 527
MboI	GATC	3 cut(s)	241, 348, 525
MboII	GAAGA	4 cut(s)	118, 208, 220, 223
MflI	RGATCY	1 cut(s)	525
MhlI	GDGCHC	4 cut(s)	125, 132, 264, 465
MluCI	AATT	3 cut(s)	214, 233, 387
Mly113I	GGCGCC	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	464
MnlI	CCTC	8 cut(s)	12, 102, 169, 192, 319, 327, 451, 472
MroNI	GCCGGC	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	1 cut(s)	90
MspI	CCGG	2 cut(s)	224, 266
MspR9I	CCNGG	2 cut(s)	229, 266
MvaI	CCWGG	1 cut(s)	229
NaeI	GCCGGC	1 cut(s)	225
NarI	GGCGCC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	3 cut(s)	241, 348, 525
NgoMIV	GCCGGC	1 cut(s)	223
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	467
NspV	TTCGAA	1 cut(s)	411
PagI	TCATGA	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PdiI	GCCGGC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	79, 357
PleI	GAGTC	1 cut(s)	464
PluTI	GGCGCC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	464
Psp124BI	GAGCTC	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	90
Sau3AI	GATC	3 cut(s)	241, 348, 525
SchI	GAGTC	1 cut(s)	464
ScrFI	CCNGG	2 cut(s)	229, 266
SduI	GDGCHC	4 cut(s)	125, 132, 264, 465
SetI	ASST	8 cut(s)	23, 48, 113, 125, 144, 174, 288, 487
SfaNI	GCATC	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	495
SfoI	GGCGCC	1 cut(s)	12
SfuI	TTCGAA	1 cut(s)	411
Sse9I	AATT	3 cut(s)	214, 233, 387
SspDI	GGCGCC	1 cut(s)	10
SspI	AATATT	1 cut(s)	504
SstI	GAGCTC	1 cut(s)	125
StyD4I	CCNGG	2 cut(s)	227, 264
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	2 cut(s)	102, 411
TasI	AATT	3 cut(s)	214, 233, 387
TfiI	GAWTC	2 cut(s)	79, 357
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	437
XmnI	GAANNNNTTC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.