Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005167.1

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Forward (+)

40038 .. 40613

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005167.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atggtggagaagaggtatataccgagctcggcgctctgttgtaaggtgattgatgttctgtattgcgaagggaaggtggaggatgcttgcgaactgtggaagaggcttttgacgaagaattgcacgccggataatgcagtattgggcacactcatatactcgctttgtgagaagggagaagtgtgggaagccaggaaattgtttgatcagtttgagacgaggatgtactctgtattgatgaaaggattctgtaagattagaaaagcgaagaagggaattaggattttggacgagatgttcgaaaaaggctgtttggcaaacaagtctacttatgctatgttgattgaggggctctgtgactccggagaggaagctgaagtcactagagtaatatctatggcaatgtcaagtgggatcttttccttactaaggttgttggtgatttggatactggggaaagtgttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

155

Amino Acids

17.63

Weight (kDa)

8.34

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	326
AccIII	TCCGGA	1 cut(s)	362
AclWI	GGATC	1 cut(s)	422
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	429
AjnI	CCWGG	1 cut(s)	191
AloI	GAACNNNNNNTCC	2 cut(s)	281, 313
AluBI	AGCT	2 cut(s)	27, 374
AluI	AGCT	2 cut(s)	27, 374
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	422
Aor13HI	TCCGGA	1 cut(s)	362
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
Asp700I	GAANNNNTTC	2 cut(s)	245, 461
AspLEI	GCGC	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	58, 451
AsuII	TTCGAA	1 cut(s)	300
BaeGI	GKGCMC	1 cut(s)	149
BanII	GRGCYC	2 cut(s)	29, 354
Bbv12I	GWGCWC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	193
BciVI	GTATCC	1 cut(s)	441
BclI	TGATCA	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	1 cut(s)	384
BfoI	RGCGCY	1 cut(s)	35
BfuI	GTATCC	1 cut(s)	441
Bme1390I	CCNGG	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	193
BmrI	ACTGGG	1 cut(s)	461
BmsI	GCATC	1 cut(s)	73
BmuI	ACTGGG	1 cut(s)	461
Bpu14I	TTCGAA	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	362
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	429
Bse1I	ACTGG	1 cut(s)	456
Bse3DI	GCAATG	1 cut(s)	408
BseAI	TCCGGA	1 cut(s)	362
BseBI	CCWGG	1 cut(s)	193
BseGI	GGATG	2 cut(s)	88, 228
BseLI	CCNNNNNNNGG	1 cut(s)	429
BseMI	GCAATG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	456
BseSI	GKGCMC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	2 cut(s)	128, 363
BslI	CCNNNNNNNGG	1 cut(s)	429
BsmAI	GTCTC	1 cut(s)	209
BsmBI	CGTCTC	1 cut(s)	209
Bsp119I	TTCGAA	1 cut(s)	300
Bsp1286I	GDGCHC	3 cut(s)	29, 149, 354
Bsp13I	TCCGGA	1 cut(s)	362
Bsp143I	GATC	2 cut(s)	205, 414
BspEI	TCCGGA	1 cut(s)	362
BspPI	GGATC	1 cut(s)	422
BspT104I	TTCGAA	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	408
BsrI	ACTGG	1 cut(s)	456
BssMI	GATC	2 cut(s)	205, 414
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	1 cut(s)	96
Bst6I	CTCTTC	2 cut(s)	5, 95
BstBI	TTCGAA	1 cut(s)	300
BstC8I	GCNNGC	2 cut(s)	88, 125
BstDEI	CTNAG	1 cut(s)	428
BstENI	CCTNNNNNAGG	1 cut(s)	427
BstF5I	GGATG	2 cut(s)	88, 228
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	2 cut(s)	208, 417
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	2 cut(s)	205, 414
BstNI	CCWGG	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	191
BstSLI	GKGCMC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BsuI	GTATCC	1 cut(s)	441
BtsCI	GGATG	2 cut(s)	88, 228
Cac8I	GCNNGC	2 cut(s)	88, 125
CfoI	GCGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	226
CviJI	RGCY	6 cut(s)	27, 106, 191, 309, 352, 374
CviKI_1	RGCY	6 cut(s)	27, 106, 191, 309, 352, 374
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	1 cut(s)	428
DpnI	GATC	2 cut(s)	207, 416
DpnII	GATC	2 cut(s)	205, 414
Eam1104I	CTCTTC	2 cut(s)	5, 95
EarI	CTCTTC	2 cut(s)	5, 95
Ecl136II	GAGCTC	1 cut(s)	27
Eco24I	GRGCYC	2 cut(s)	29, 354
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	396
EcoICRI	GAGCTC	1 cut(s)	27
EcoNI	CCTNNNNNAGG	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	191
EcoT38I	GRGCYC	2 cut(s)	29, 354
Esp3I	CGTCTC	1 cut(s)	209
FaiI	YATR	7 cut(s)	18, 20, 155, 157, 333, 338, 398
FbaI	TGATCA	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	326
FokI	GGATG	2 cut(s)	95, 235
FriOI	GRGCYC	2 cut(s)	29, 354
FspBI	CTAG	1 cut(s)	384
GlaI	GCGC	1 cut(s)	33
HaeII	RGCGCY	1 cut(s)	35
HapII	CCGG	2 cut(s)	128, 363
HhaI	GCGC	1 cut(s)	34
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	2 cut(s)	246, 359
HpaII	CCGG	2 cut(s)	128, 363
HphI	GGTGA	2 cut(s)	58, 451
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188III	TCNNGA	1 cut(s)	363
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	4 cut(s)	62, 67, 166, 265
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4V	TGCA	2 cut(s)	123, 137
HpyF3I	CTNAG	1 cut(s)	428
HspAI	GCGC	1 cut(s)	32
Kpn2I	TCCGGA	1 cut(s)	362
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	205, 414
LpnPI	CCDG	5 cut(s)	141, 178, 205, 376, 437
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	384
MaeIII	GTNAC	2 cut(s)	356, 379
MalI	GATC	2 cut(s)	207, 416
MboI	GATC	2 cut(s)	205, 414
MboII	GAAGA	4 cut(s)	22, 112, 127, 280
MflI	RGATCY	1 cut(s)	414
MhlI	GDGCHC	3 cut(s)	29, 149, 354
MluCI	AATT	3 cut(s)	118, 197, 276
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	6 cut(s)	6, 73, 96, 213, 340, 361
MroI	TCCGGA	1 cut(s)	362
MroXI	GAANNNNTTC	2 cut(s)	245, 461
MspI	CCGG	2 cut(s)	128, 363
MspR9I	CCNGG	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	193
NdeII	GATC	2 cut(s)	205, 414
NmeAIII	GCCGAG	1 cut(s)	8
NmuCI	GTSAC	2 cut(s)	356, 379
NspV	TTCGAA	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PdmI	GAANNNNTTC	2 cut(s)	245, 461
PfeI	GAWTC	1 cut(s)	246
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	414
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SacI	GAGCTC	1 cut(s)	29
Sau3AI	GATC	2 cut(s)	205, 414
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	1 cut(s)	193
SduI	GDGCHC	3 cut(s)	29, 149, 354
SetI	ASST	6 cut(s)	17, 29, 48, 78, 376, 434
SfaNI	GCATC	1 cut(s)	73
SfuI	TTCGAA	1 cut(s)	300
Sse9I	AATT	3 cut(s)	118, 197, 276
SspMI	CTAG	1 cut(s)	384
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	300
TasI	AATT	3 cut(s)	118, 197, 276
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	1 cut(s)	246
TseFI	GTSAC	2 cut(s)	356, 379
Tsp45I	GTSAC	2 cut(s)	356, 379
TspDTI	ATGAA	1 cut(s)	254
XagI	CCTNNNNNAGG	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	326
XmnI	GAANNNNTTC	2 cut(s)	245, 461
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.