Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Forward (+)

33056358 .. 33057971

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G014800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGCTGCTTCGCCGGAACCTCTCCCCCAAACCCTTCTCTCTCCTCCACTCAATCACCGCCGTCCCCTTCTCCACCTCCACCTCCACCTCCGCCGCCGTTGATTTCCTCCCCTCCTACACCATCACCCCTCCAATCCAAGACTGGCCCCACCACCTCCACCCAAGGCGCCTCATCTCCCTCATCACCCGCGAGCCCAAACTCGACCTCGCCCTCCAAATCTTCCACCACGCCTCCAAATACCACCCCGGGTTTCACCATAATTACCACACCTACCACGCCATCATCCGCCGCCTCCTCCGCTCCCGCGCTTTTCACCTCATCGACCCCCTCCTCTCCGACCTCCGCGCCTCCAATCTCCGATGCAGCGAAGACCTCTTCATCTCCCTAATCCGCAATTACGGCGTCGTTTCACGCCCTAAACTCGCCTTCAAGACATTTATCACCATTCCGAAATTCGGCGCCCAACGATCCGTGAGGTCCTTGAATGCGTTGCTGAACGCTTTGGTTCAGAATCACGAGTATAGATTGGTTCACTCGGTGTTTCGGAACTGTAGGGAGAGGTTCGGGGTGGCGCCGAATGTGTTTAGTTGTAATATATTGATCAAAGCACTGTGTAAGAGAAATGATTTGGAGACTGCACACCAGGTGCTCGATGAAATGCCTGCGATGGGATTTGTGCCCAATGTGGTGACTTTTACTACCATTTTGGGTGGTTATGTGTCGCGGCAAGATATGGTGGGTGCCAAGAGGGTGTTTGGTGAGATTTTGGACAGAGGGTGGTTTCCTGATGTGACTACATATACTATATTGATGGATGGGTATGTGAAGCAGGGGAAGCTGGTTGAGGCTATTAAGGTTATGGATGAGATGGAGGATAATGGGGTTGGCGCCAATGAGGTCACTTATGGGGTTATGATTGAAGCTTATTGTAAGGAAAAGAAGTCGGGTGAAGCGGTTAATTTGCTTGATGATATGGTGGAGAAGAGGTATATACCGAGCTCGGCGCTCTGTTGTAAGGTGATTGATGTTTTGTGTTGCGAAGGGAAGGTGGAGGATGCTTGTGAACTTTGGAAGAGGCTTTTGAAGAAGAATTGCACACCGGATAATGCAGTATTGGGCACGCTCATATACTGGCTTTGTAAGAAGGGAGAAATGTGGGAAGCCAGGAAATTGTTTGATCAGATTGAGATGAGTGAGCCTCCGGATGTCATGACTTACAACGTGCTTATTTCTGGAATGTGTGAAGTGGGGGAGTTGTGTGAGGCTGGGAGGTTGTGGGATGACATGGTGGAGAAAGGATGTTCTCCGAATTCTTTTACATATAATGTATTGATCAAAGGATTCTATAAGATTGGAAAAGCGAAGGAGGGAATAAGGATTTTGGACGAGATGTTCGAAAAAGGCTGTTTGCCAAACAAGTCTACTTATGCTATGTTGATCGAGGGGCTCTGTGACTCAGGAGAGGAAGCTGAAATCACTAGAGTAATATCTATGGCAATGTCAAGTGGAGACATTGACAGTGATTCCTGGGATCTTTTCCTTCCTAAGGTTGTTGGTGATTTGGATACTGGGGAAAGTGTTCTAAACAGAATACTACTGGAGAATGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

537

Amino Acids

60.67

Weight (kDa)

6.34

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	157 - 206	5.8e-07	PPR repeat family
PPR_3	PF13812	180 - 241	9.1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	189 - 220	2.9e-08	PPR repeat
PPR_2	PF13041	192 - 240	9.9e-15	PPR repeat family
PPR_2	PF13041	227 - 276	9.7e-13	PPR repeat family
PPR_3	PF13812	251 - 311	6.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	259 - 291	5.3e-09	PPR repeat
PPR_2	PF13041	262 - 311	2.4e-16	PPR repeat family
PPR	PF01535	266 - 295	3e-08	PPR repeat
PPR_1	PF12854	294 - 326	2.4e-06	PPR repeat
PPR_2	PF13041	298 - 334	5e-07	PPR repeat family
PPR	PF01535	300 - 329	2.3e-06	PPR repeat
PPR_1	PF12854	401 - 430	9e-08	PPR repeat
PPR_2	PF13041	401 - 450	7.7e-19	PPR repeat family
PPR_3	PF13812	401 - 447	3.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	432 - 464	1.1e-07	PPR repeat
PPR_2	PF13041	437 - 485	5.3e-14	PPR repeat family
PPR	PF01535	439 - 469	2.9e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	5 cut(s)	165, 458, 571, 740, 887
AccBSI	CCGCTC	1 cut(s)	300
AccI	GTMKAC	1 cut(s)	1421
AccII	CGCG	4 cut(s)	189, 306, 345, 724
AccIII	TCCGGA	1 cut(s)	1201
AclWI	GGATC	2 cut(s)	462, 1539
AcsI	RAATTY	2 cut(s)	452, 1309
AcyI	GRCGYC	5 cut(s)	166, 402, 459, 572, 888
AdeI	CACNNNGTG	2 cut(s)	538, 646
AfiI	CCNNNNNNNGG	3 cut(s)	455, 668, 1546
AgsI	TTSAA	4 cut(s)	430, 484, 920, 1084
AjnI	CCWGG	3 cut(s)	642, 1163, 1526
AloI	GAACNNNNNNTCC	2 cut(s)	1376, 1408
AluBI	AGCT	4 cut(s)	838, 923, 999, 1469
AluI	AGCT	4 cut(s)	838, 923, 999, 1469
Alw21I	GWGCWC	2 cut(s)	651, 1001
Alw26I	GTCTC	2 cut(s)	626, 1503
AlwI	GGATC	2 cut(s)	462, 1539
Ama87I	CYCGRG	1 cut(s)	245
Aor13HI	TCCGGA	1 cut(s)	1201
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	4, 363
ApoI	RAATTY	2 cut(s)	452, 1309
ArsI	GACNNNNNNTTYG	2 cut(s)	1376, 1408
Asp700I	GAANNNNTTC	1 cut(s)	1578
AspLEI	GCGC	7 cut(s)	168, 308, 347, 461, 574, 890, 1006
AspS9I	GGNCC	2 cut(s)	144, 477
AsuC2I	CCSGG	2 cut(s)	246, 247
AsuII	TTCGAA	1 cut(s)	1395
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	477
AxyI	CCTNAGG	1 cut(s)	1545
BaeGI	GKGCMC	2 cut(s)	681, 1121
BanI	GGYRCC	5 cut(s)	165, 458, 571, 740, 887
BanII	GRGCYC	3 cut(s)	195, 1001, 1449
BauI	CACGAG	1 cut(s)	515
BbsI	GAAGAC	1 cut(s)	375
Bbv12I	GWGCWC	2 cut(s)	651, 1001
BbvI	GCAGC	1 cut(s)	375
BccI	CCATC	6 cut(s)	128, 287, 661, 805, 809, 862
BceAI	ACGGC	3 cut(s)	44, 80, 415
BciT130I	CCWGG	3 cut(s)	644, 1165, 1528
BciVI	GTATCC	1 cut(s)	1558
BclI	TGATCA	3 cut(s)	600, 1177, 1332
BcnI	CCSGG	2 cut(s)	246, 247
BcoDI	GTCTC	2 cut(s)	626, 1503
BfaI	CTAG	1 cut(s)	1479
BfmI	CTRYAG	1 cut(s)	550
BfoI	RGCGCY	5 cut(s)	169, 462, 575, 891, 1007
BfuI	GTATCC	1 cut(s)	1558
BisI	GCNGC	5 cut(s)	5, 93, 289, 364, 725
BlsI	GCNGC	5 cut(s)	6, 94, 290, 365, 726
Bme1390I	CCNGG	5 cut(s)	246, 247, 644, 1165, 1528
Bme18I	GGWCC	1 cut(s)	477
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	2 cut(s)	144, 477
BmiI	GGNNCC	7 cut(s)	17, 146, 167, 460, 573, 742, 889
BmrFI	CCNGG	5 cut(s)	246, 247, 644, 1165, 1528
BmrI	ACTGGG	1 cut(s)	1578
BmsI	GCATC	2 cut(s)	350, 1045
BmuI	ACTGGG	1 cut(s)	1578
BpiI	GAAGAC	1 cut(s)	375
BplI	GAGNNNNNCTC	2 cut(s)	1183, 1215
Bpu14I	TTCGAA	1 cut(s)	1395
BpuMI	CCSGG	2 cut(s)	246, 247
BsaHI	GRCGYC	5 cut(s)	166, 402, 459, 572, 888
BsaJI	CCNNGG	4 cut(s)	161, 244, 245, 1527
BsaWI	WCCGGW	2 cut(s)	1099, 1201
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 971, 1001
Bsc4I	CCNNNNNNNGG	3 cut(s)	455, 668, 1546
Bse1I	ACTGG	4 cut(s)	146, 1136, 1573, 1602
Bse21I	CCTNAGG	1 cut(s)	1545
Bse3DI	GCAATG	1 cut(s)	1503
BseAI	TCCGGA	1 cut(s)	1201
BseBI	CCWGG	3 cut(s)	644, 1165, 1528
BseDI	CCNNGG	4 cut(s)	161, 244, 245, 1527
BseGI	GGATG	7 cut(s)	282, 820, 868, 1060, 1210, 1285, 1304
BseLI	CCNNNNNNNGG	3 cut(s)	455, 668, 1546
BseMI	GCAATG	1 cut(s)	1503
BseMII	CTCAG	1 cut(s)	1470
BseNI	ACTGG	4 cut(s)	146, 1136, 1573, 1602
BseRI	GAGGAG	3 cut(s)	32, 284, 320
BseSI	GKGCMC	2 cut(s)	681, 1121
BseXI	GCAGC	1 cut(s)	375
BseYI	CCCAGC	1 cut(s)	1265
BsgI	GTGCAG	1 cut(s)	621
Bsh1236I	CGCG	4 cut(s)	189, 306, 345, 724
BshFI	GGCC	1 cut(s)	145
BshNI	GGYRCC	5 cut(s)	165, 458, 571, 740, 887
BsiHKAI	GWGCWC	2 cut(s)	651, 1001
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	4 cut(s)	13, 246, 1100, 1202
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	3 cut(s)	455, 668, 1546
BsmAI	GTCTC	2 cut(s)	626, 1503
BsmFI	GGGAC	1 cut(s)	47
BsmI	GAATGC	2 cut(s)	490, 1609
BsnI	GGCC	1 cut(s)	145
BsoBI	CYCGRG	1 cut(s)	245
Bsp119I	TTCGAA	1 cut(s)	1395
Bsp1286I	GDGCHC	6 cut(s)	195, 651, 681, 1001, 1121, 1449
Bsp13I	TCCGGA	1 cut(s)	1201
Bsp143I	GATC	6 cut(s)	467, 600, 1177, 1332, 1437, 1531
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	1 cut(s)	1469
BspEI	TCCGGA	1 cut(s)	1201
BspFNI	CGCG	4 cut(s)	189, 306, 345, 724
BspHI	TCATGA	1 cut(s)	1209
BspLI	GGNNCC	7 cut(s)	17, 146, 167, 460, 573, 742, 889
BspPI	GGATC	2 cut(s)	462, 1539
BspT104I	TTCGAA	1 cut(s)	1395
BspT107I	GGYRCC	5 cut(s)	165, 458, 571, 740, 887
BsrBI	CCGCTC	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	1503
BsrI	ACTGG	4 cut(s)	146, 1136, 1573, 1602
BssECI	CCNNGG	4 cut(s)	161, 244, 245, 1527
BssMI	GATC	6 cut(s)	467, 600, 1177, 1332, 1437, 1531
BssNI	GRCGYC	5 cut(s)	166, 402, 459, 572, 888
BssSI	CACGAG	1 cut(s)	515
BssT1I	CCWWGG	1 cut(s)	161
Bst2BI	CACGAG	1 cut(s)	515
Bst2UI	CCWGG	3 cut(s)	644, 1165, 1528
Bst4CI	ACNGT	3 cut(s)	551, 612, 1520
Bst6I	CTCTTC	3 cut(s)	380, 977, 1067
BstACI	GRCGYC	5 cut(s)	166, 402, 459, 572, 888
BstBI	TTCGAA	1 cut(s)	1395
BstC8I	GCNNGC	3 cut(s)	191, 663, 1121
BstDEI	CTNAG	2 cut(s)	1456, 1545
BstENI	CCTNNNNNAGG	1 cut(s)	1544
BstF5I	GGATG	7 cut(s)	282, 820, 868, 1060, 1210, 1285, 1304
BstFNI	CGCG	4 cut(s)	189, 306, 345, 724
BstH2I	RGCGCY	5 cut(s)	169, 462, 575, 891, 1007
BstHHI	GCGC	7 cut(s)	168, 308, 347, 461, 574, 890, 1006
BstKTI	GATC	6 cut(s)	470, 603, 1180, 1335, 1440, 1534
BstMAI	GTCTC	2 cut(s)	626, 1503
BstMBI	GATC	6 cut(s)	467, 600, 1177, 1332, 1437, 1531
BstMWI	GCNNNNNNNGC	3 cut(s)	297, 399, 835
BstNI	CCWGG	3 cut(s)	644, 1165, 1528
BstSCI	CCNGG	5 cut(s)	244, 245, 642, 1163, 1526
BstSFI	CTRYAG	1 cut(s)	550
BstSLI	GKGCMC	2 cut(s)	681, 1121
BstUI	CGCG	4 cut(s)	189, 306, 345, 724
BstV1I	GCAGC	1 cut(s)	375
BstV2I	GAAGAC	1 cut(s)	375
BstX2I	RGATCY	1 cut(s)	1531
BstYI	RGATCY	1 cut(s)	1531
Bsu36I	CCTNAGG	1 cut(s)	1545
BsuI	GTATCC	1 cut(s)	1558
BsuRI	GGCC	1 cut(s)	145
BtgZI	GCGATG	1 cut(s)	680
BtsCI	GGATG	7 cut(s)	282, 820, 868, 1060, 1210, 1285, 1304
BtsIMutI	CAGTG	2 cut(s)	608, 1525
Cac8I	GCNNGC	3 cut(s)	191, 663, 1121
CciI	TCATGA	1 cut(s)	1209
CfoI	GCGC	7 cut(s)	168, 308, 347, 461, 574, 890, 1006
Cfr13I	GGNCC	2 cut(s)	144, 477
Cfr9I	CCCGGG	1 cut(s)	245
CseI	GACGC	1 cut(s)	391
CsiI	ACCWGGT	1 cut(s)	642
CviAII	CATG	2 cut(s)	1210, 1285
DdeI	CTNAG	2 cut(s)	1456, 1545
DinI	GGCGCC	4 cut(s)	167, 460, 573, 889
DpnI	GATC	6 cut(s)	469, 602, 1179, 1334, 1439, 1533
DpnII	GATC	6 cut(s)	467, 600, 1177, 1332, 1437, 1531
DraIII	CACNNNGTG	2 cut(s)	538, 646
Eam1104I	CTCTTC	3 cut(s)	380, 977, 1067
EarI	CTCTTC	3 cut(s)	380, 977, 1067
EciI	GGCGGA	2 cut(s)	79, 275
Ecl136II	GAGCTC	1 cut(s)	999
Eco130I	CCWWGG	1 cut(s)	161
Eco24I	GRGCYC	3 cut(s)	195, 1001, 1449
Eco47I	GGWCC	1 cut(s)	477
Eco53kI	GAGCTC	1 cut(s)	999
Eco81I	CCTNAGG	1 cut(s)	1545
Eco88I	CYCGRG	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	999
EcoNI	CCTNNNNNAGG	1 cut(s)	1544
EcoO109I	RGGNCCY	1 cut(s)	477
EcoRI	GAATTC	1 cut(s)	1309
EcoRII	CCWGG	3 cut(s)	642, 1163, 1526
EcoT14I	CCWWGG	1 cut(s)	161
EcoT38I	GRGCYC	3 cut(s)	195, 1001, 1449
EgeI	GGCGCC	4 cut(s)	167, 460, 573, 889
EheI	GGCGCC	4 cut(s)	167, 460, 573, 889
ErhI	CCWWGG	1 cut(s)	161
FaeI	CATG	2 cut(s)	1213, 1288
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	2 cut(s)	1209, 1284
FauI	CCCGC	2 cut(s)	194, 311
FbaI	TGATCA	3 cut(s)	600, 1177, 1332
FblI	GTMKAC	1 cut(s)	1421
Fnu4HI	GCNGC	5 cut(s)	5, 93, 289, 364, 725
FokI	GGATG	7 cut(s)	269, 827, 875, 1067, 1217, 1292, 1311
FriOI	GRGCYC	3 cut(s)	195, 1001, 1449
Fsp4HI	GCNGC	5 cut(s)	5, 93, 289, 364, 725
FspBI	CTAG	1 cut(s)	1479
GlaI	GCGC	7 cut(s)	167, 307, 346, 460, 573, 889, 1005
GluI	GCNGC	5 cut(s)	5, 93, 289, 364, 725
GsaI	CCCAGC	1 cut(s)	1269
HaeII	RGCGCY	5 cut(s)	169, 462, 575, 891, 1007
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	4 cut(s)	13, 246, 1100, 1202
HgaI	GACGC	1 cut(s)	391
HhaI	GCGC	7 cut(s)	168, 308, 347, 461, 574, 890, 1006
Hin1I	GRCGYC	5 cut(s)	166, 402, 459, 572, 888
Hin1II	CATG	2 cut(s)	1213, 1288
Hin6I	GCGC	7 cut(s)	166, 306, 345, 459, 572, 888, 1004
HinP1I	GCGC	7 cut(s)	166, 306, 345, 459, 572, 888, 1004
HindIII	AAGCTT	1 cut(s)	921
HinfI	GANTC	4 cut(s)	511, 1341, 1454, 1523
HpaII	CCGG	4 cut(s)	13, 246, 1100, 1202
Hpy166II	GTNNAC	3 cut(s)	532, 1064, 1422
Hpy188I	TCNGA	7 cut(s)	337, 359, 450, 510, 546, 1182, 1308
Hpy188III	TCNNGA	7 cut(s)	430, 515, 785, 1202, 1210, 1233, 1458
Hpy8I	GTNNAC	3 cut(s)	532, 1064, 1422
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	8 cut(s)	43, 76, 436, 1034, 1039, 1138, 1357, 1550
HpyCH4III	ACNGT	3 cut(s)	551, 612, 1520
HpyCH4IV	ACGT	1 cut(s)	1221
HpyCH4V	TGCA	4 cut(s)	363, 638, 1095, 1109
HpyF10VI	GCNNNNNNNGC	3 cut(s)	297, 399, 835
HpyF3I	CTNAG	2 cut(s)	1456, 1545
HpySE526I	ACGT	1 cut(s)	1221
Hsp92I	GRCGYC	5 cut(s)	166, 402, 459, 572, 888
Hsp92II	CATG	2 cut(s)	1213, 1288
HspAI	GCGC	7 cut(s)	166, 306, 345, 459, 572, 888, 1004
KasI	GGCGCC	4 cut(s)	165, 458, 571, 887
Kpn2I	TCCGGA	1 cut(s)	1201
Ksp22I	TGATCA	3 cut(s)	600, 1177, 1332
Kzo9I	GATC	6 cut(s)	467, 600, 1177, 1332, 1437, 1531
LmnI	GCTCC	1 cut(s)	305
Lsp1109I	GCAGC	1 cut(s)	375
LweI	GCATC	2 cut(s)	350, 1045
MabI	ACCWGGT	1 cut(s)	642
MaeI	CTAG	1 cut(s)	1479
MaeII	ACGT	1 cut(s)	1221
MaeIII	GTNAC	4 cut(s)	688, 790, 898, 1451
MalI	GATC	6 cut(s)	469, 602, 1179, 1334, 1439, 1533
MbiI	CCGCTC	1 cut(s)	300
MboI	GATC	6 cut(s)	467, 600, 1177, 1332, 1437, 1531
MboII	GAAGA	7 cut(s)	211, 367, 380, 994, 1084, 1096, 1099
MflI	RGATCY	1 cut(s)	1531
MhlI	GDGCHC	6 cut(s)	195, 651, 681, 1001, 1121, 1449
MluCI	AATT	7 cut(s)	259, 394, 452, 958, 1090, 1169, 1309
Mly113I	GGCGCC	4 cut(s)	166, 459, 572, 888
MlyI	GAGTC	1 cut(s)	1448
MmeI	TCCRAC	1 cut(s)	360
MroI	TCCGGA	1 cut(s)	1201
MroXI	GAANNNNTTC	1 cut(s)	1578
MseI	TTAA	2 cut(s)	852, 957
MspI	CCGG	4 cut(s)	13, 246, 1100, 1202
MspR9I	CCNGG	5 cut(s)	246, 247, 644, 1165, 1528
Mva1269I	GAATGC	2 cut(s)	490, 1609
MvaI	CCWGG	3 cut(s)	644, 1165, 1528
MvnI	CGCG	4 cut(s)	189, 306, 345, 724
MwoI	GCNNNNNNNGC	3 cut(s)	297, 399, 835
NarI	GGCGCC	4 cut(s)	166, 459, 572, 888
NciI	CCSGG	2 cut(s)	246, 247
NdeII	GATC	6 cut(s)	467, 600, 1177, 1332, 1437, 1531
NlaIII	CATG	2 cut(s)	1213, 1288
NlaIV	GGNNCC	7 cut(s)	17, 146, 167, 460, 573, 742, 889
NmeAIII	GCCGAG	1 cut(s)	980
NmuCI	GTSAC	4 cut(s)	688, 790, 898, 1451
NspV	TTCGAA	1 cut(s)	1395
PagI	TCATGA	1 cut(s)	1209
PcsI	WCGNNNNNNNCGW	1 cut(s)	1392
PctI	GAATGC	2 cut(s)	490, 1609
PdmI	GAANNNNTTC	1 cut(s)	1578
PfeI	GAWTC	3 cut(s)	511, 1341, 1523
PkrI	GCNGC	5 cut(s)	6, 94, 290, 365, 726
PleI	GAGTC	1 cut(s)	1448
PluTI	GGCGCC	4 cut(s)	169, 462, 575, 891
PpsI	GAGTC	1 cut(s)	1448
PpuMI	RGGWCCY	1 cut(s)	477
Psp124BI	GAGCTC	1 cut(s)	1001
Psp5II	RGGWCCY	1 cut(s)	477
Psp6I	CCWGG	3 cut(s)	642, 1163, 1526
PspFI	CCCAGC	1 cut(s)	1265
PspGI	CCWGG	3 cut(s)	642, 1163, 1526
PspN4I	GGNNCC	7 cut(s)	17, 146, 167, 460, 573, 742, 889
PspPI	GGNCC	2 cut(s)	144, 477
PspPPI	RGGWCCY	1 cut(s)	477
PsuI	RGATCY	1 cut(s)	1531
SacI	GAGCTC	1 cut(s)	1001
SaqAI	TTAA	2 cut(s)	852, 957
SatI	GCNGC	5 cut(s)	5, 93, 289, 364, 725
Sau3AI	GATC	6 cut(s)	467, 600, 1177, 1332, 1437, 1531
Sau96I	GGNCC	2 cut(s)	144, 477
SchI	GAGTC	1 cut(s)	1448
ScrFI	CCNGG	5 cut(s)	246, 247, 644, 1165, 1528
SduI	GDGCHC	6 cut(s)	195, 651, 681, 1001, 1121, 1449
SexAI	ACCWGGT	1 cut(s)	642
SfaNI	GCATC	2 cut(s)	350, 1045
SfcI	CTRYAG	1 cut(s)	550
SfoI	GGCGCC	4 cut(s)	167, 460, 573, 889
SfuI	TTCGAA	1 cut(s)	1395
SinI	GGWCC	1 cut(s)	477
SmaI	CCCGGG	1 cut(s)	247
Sse9I	AATT	7 cut(s)	259, 394, 452, 958, 1090, 1169, 1309
SspDI	GGCGCC	4 cut(s)	165, 458, 571, 887
SspMI	CTAG	1 cut(s)	1479
SstI	GAGCTC	1 cut(s)	1001
StyD4I	CCNGG	5 cut(s)	244, 245, 642, 1163, 1526
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	3 cut(s)	551, 612, 1520
TaiI	ACGT	1 cut(s)	1224
TaqI	TCGA	5 cut(s)	201, 321, 651, 1395, 1440
TasI	AATT	7 cut(s)	259, 394, 452, 958, 1090, 1169, 1309
TauI	GCSGC	3 cut(s)	95, 291, 727
TfiI	GAWTC	3 cut(s)	511, 1341, 1523
Tru1I	TTAA	2 cut(s)	852, 957
Tru9I	TTAA	2 cut(s)	852, 957
TscAI	CASTG	2 cut(s)	615, 1525
TseFI	GTSAC	4 cut(s)	688, 790, 898, 1451
TseI	GCWGC	2 cut(s)	4, 363
Tsp45I	GTSAC	4 cut(s)	688, 790, 898, 1451
TspDTI	ATGAA	2 cut(s)	367, 669
TspGWI	ACGGA	1 cut(s)	460
TspMI	CCCGGG	1 cut(s)	245
TspRI	CASTG	2 cut(s)	615, 1525
VpaK11BI	GGWCC	1 cut(s)	477
XagI	CCTNNNNNAGG	1 cut(s)	1544
XapI	RAATTY	2 cut(s)	452, 1309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	138
XmaI	CCCGGG	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	1421
XmnI	GAANNNNTTC	1 cut(s)	1578
XspI	CTAG	1 cut(s)	1479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.