Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Reverse (-)

31738975 .. 31739838

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029032

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGATTTGTGCCCAATGTGGTGACTTTTACTACCATTTTGGGTGGTTATGTGTCGTGGCGTGATATGGTTGGTGCCAAGAGGGTGTTTGGTGAGATTTTGGACAGAGGGTGGTTTCCTGATGTGACTACTTATACTATATTGATGGATGGGTACGTGAAGCAGGGGAAGCTGGTTGAGGCTATTAAGGTTATGGATGAGATGGAGGATAATGGGATTGGCACCAATGAGGTTACTTATGGGGTTATGATTGAAGCTTATTGTAAGGAGAAGAAATCGGGTGAAGCGGTTAATTTGCTTAATGATATGGTGGAGAAGAGGTATATACCGAGCTCGGCGCTCTGTTGTAAGGTGATTGATGTCTTGTGTTGCGAAGGGAAGGTGGAGGATGCTTGTGAACTGTGGAAGAGGCTTTTGAAGAAGAATTGCACGACGGATAATGCGGTATTGGGCACGCTCATATACTGGCTTTGTAAGAAGGGAGAGGTGTGGGAAGCCAGGAGTTTGTTTGATCAGTTTGAGACGAGTGAGCCTCCGGATGTCATGACTTACAACATGCTTATTTCTGGAATGTGTGAAGTGGGGGAGTTGTGTGAGGCAGGGAGGTTATGGGATGACATGGTGGAGAAAGGATATTCTTCGAATTCTTTTACATATAATGTATTGATCAAAGGATTCTGTAAGATTGGAAAAGCGAAGGAGGGAATTCGGATTTTGGACAAGATGTTCGAAAAAGGCTATTTGCCAAACAAGTCTACTTATGCTATGTTGATTGAGGGGCTCTGTGACTCGGTAGAGGATGCTGAAATGGCTAGAGTAATATCTATGTCAATATCAAGTGCAGACATTAACAGTGATTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

288

Amino Acids

32.17

Weight (kDa)

4.73

Isoelectric Point (pI)

29.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	5 - 52	8.5e-12	PPR repeat family
PPR_3	PF13812	29 - 89	1.5e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	37 - 69	2.3e-09	PPR repeat
PPR_2	PF13041	40 - 89	1.3e-16	PPR repeat family
PPR	PF01535	44 - 73	1.2e-08	PPR repeat
PPR_2	PF13041	76 - 112	1.2e-07	PPR repeat family
PPR_1	PF12854	76 - 104	4.6e-06	PPR repeat
PPR	PF01535	78 - 107	1.3e-06	PPR repeat
PPR_2	PF13041	179 - 228	3.9e-18	PPR repeat family
PPR_1	PF12854	179 - 208	1.4e-08	PPR repeat
PPR_3	PF13812	202 - 259	5.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	210 - 242	6.9e-09	PPR repeat
PPR_2	PF13041	215 - 263	3.8e-14	PPR repeat family
PPR	PF01535	217 - 246	3.2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	74, 221
AccI	GTMKAC	1 cut(s)	755
AccIII	TCCGGA	1 cut(s)	535
AciI	CCGC	2 cut(s)	287, 443
AcsI	RAATTY	2 cut(s)	643, 705
AfaI	GTAC	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	254, 418
AjnI	CCWGG	1 cut(s)	497
AloI	GAACNNNNNNTCC	2 cut(s)	710, 742
AluBI	AGCT	3 cut(s)	172, 257, 333
AluI	AGCT	3 cut(s)	172, 257, 333
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	1 cut(s)	515
Aor13HI	TCCGGA	1 cut(s)	535
ApoI	RAATTY	2 cut(s)	643, 705
ArsI	GACNNNNNNTTYG	2 cut(s)	710, 742
AspLEI	GCGC	1 cut(s)	340
AsuHPI	GGTGA	4 cut(s)	34, 104, 293, 364
AsuII	TTCGAA	2 cut(s)	641, 729
BaeGI	GKGCMC	2 cut(s)	15, 455
BanI	GGYRCC	2 cut(s)	74, 221
BanII	GRGCYC	2 cut(s)	335, 783
Bbv12I	GWGCWC	1 cut(s)	335
BccI	CCATC	3 cut(s)	139, 143, 196
BciT130I	CCWGG	1 cut(s)	499
BclI	TGATCA	2 cut(s)	511, 666
BcoDI	GTCTC	1 cut(s)	515
BfaI	CTAG	2 cut(s)	813, 862
BfoI	RGCGCY	1 cut(s)	341
Bme1390I	CCNGG	1 cut(s)	499
BmiI	GGNNCC	2 cut(s)	76, 223
BmrFI	CCNGG	1 cut(s)	499
BmsI	GCATC	2 cut(s)	379, 790
BplI	GAGNNNNNCTC	2 cut(s)	517, 549
Bpu14I	TTCGAA	2 cut(s)	641, 729
BsaAI	YACGTR	1 cut(s)	157
BsaWI	WCCGGW	1 cut(s)	535
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bse1I	ACTGG	1 cut(s)	470
BseAI	TCCGGA	1 cut(s)	535
BseBI	CCWGG	1 cut(s)	499
BseGI	GGATG	6 cut(s)	154, 202, 394, 544, 619, 805
BseNI	ACTGG	1 cut(s)	470
BseSI	GKGCMC	2 cut(s)	15, 455
BsgI	GTGCAG	1 cut(s)	861
BshNI	GGYRCC	2 cut(s)	74, 221
BsiHKAI	GWGCWC	1 cut(s)	335
BsiSI	CCGG	1 cut(s)	536
BsmAI	GTCTC	1 cut(s)	515
BsmBI	CGTCTC	1 cut(s)	515
Bsp119I	TTCGAA	2 cut(s)	641, 729
Bsp1286I	GDGCHC	4 cut(s)	15, 335, 455, 783
Bsp13I	TCCGGA	1 cut(s)	535
Bsp143I	GATC	2 cut(s)	511, 666
BspACI	CCGC	2 cut(s)	287, 443
BspEI	TCCGGA	1 cut(s)	535
BspHI	TCATGA	1 cut(s)	543
BspLI	GGNNCC	2 cut(s)	76, 223
BspT104I	TTCGAA	2 cut(s)	641, 729
BspT107I	GGYRCC	2 cut(s)	74, 221
BsrI	ACTGG	1 cut(s)	470
BssMI	GATC	2 cut(s)	511, 666
Bst2UI	CCWGG	1 cut(s)	499
Bst4CI	ACNGT	2 cut(s)	402, 854
Bst6I	CTCTTC	2 cut(s)	311, 401
BstBAI	YACGTR	1 cut(s)	157
BstBI	TTCGAA	2 cut(s)	641, 729
BstC8I	GCNNGC	1 cut(s)	455
BstF5I	GGATG	6 cut(s)	154, 202, 394, 544, 619, 805
BstH2I	RGCGCY	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	2 cut(s)	514, 669
BstMAI	GTCTC	1 cut(s)	515
BstMBI	GATC	2 cut(s)	511, 666
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 809
BstNI	CCWGG	1 cut(s)	499
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	1 cut(s)	497
BstSLI	GKGCMC	2 cut(s)	15, 455
BtsCI	GGATG	6 cut(s)	154, 202, 394, 544, 619, 805
BtsIMutI	CAGTG	1 cut(s)	859
Cac8I	GCNNGC	1 cut(s)	455
CciI	TCATGA	1 cut(s)	543
CfoI	GCGC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	3 cut(s)	544, 556, 619
CviQI	GTAC	1 cut(s)	154
DpnI	GATC	2 cut(s)	513, 668
DpnII	GATC	2 cut(s)	511, 666
Eam1104I	CTCTTC	2 cut(s)	311, 401
EarI	CTCTTC	2 cut(s)	311, 401
Ecl136II	GAGCTC	1 cut(s)	333
Eco24I	GRGCYC	2 cut(s)	335, 783
Eco53kI	GAGCTC	1 cut(s)	333
EcoICRI	GAGCTC	1 cut(s)	333
EcoRI	GAATTC	2 cut(s)	643, 705
EcoRII	CCWGG	1 cut(s)	497
EcoT38I	GRGCYC	2 cut(s)	335, 783
Esp3I	CGTCTC	1 cut(s)	515
FaeI	CATG	3 cut(s)	547, 559, 622
FatI	CATG	3 cut(s)	543, 555, 618
FbaI	TGATCA	2 cut(s)	511, 666
FblI	GTMKAC	1 cut(s)	755
FokI	GGATG	6 cut(s)	161, 209, 401, 551, 626, 812
FriOI	GRGCYC	2 cut(s)	335, 783
FspBI	CTAG	2 cut(s)	813, 862
GlaI	GCGC	1 cut(s)	339
HaeII	RGCGCY	1 cut(s)	341
HapII	CCGG	1 cut(s)	536
HhaI	GCGC	1 cut(s)	340
Hin1II	CATG	3 cut(s)	547, 559, 622
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	3 cut(s)	675, 788, 857
HpaII	CCGG	1 cut(s)	536
HphI	GGTGA	4 cut(s)	34, 104, 293, 364
Hpy166II	GTNNAC	2 cut(s)	398, 756
Hpy188I	TCNGA	1 cut(s)	711
Hpy188III	TCNNGA	4 cut(s)	119, 536, 544, 567
Hpy8I	GTNNAC	2 cut(s)	398, 756
Hpy99I	CGWCG	1 cut(s)	436
HpyAV	CCTTC	4 cut(s)	368, 373, 472, 691
HpyCH4III	ACNGT	2 cut(s)	402, 854
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	2 cut(s)	429, 842
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 809
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	3 cut(s)	547, 559, 622
HspAI	GCGC	1 cut(s)	338
Kpn2I	TCCGGA	1 cut(s)	535
Ksp22I	TGATCA	2 cut(s)	511, 666
Kzo9I	GATC	2 cut(s)	511, 666
LpnPI	CCDG	9 cut(s)	132, 149, 158, 451, 484, 511, 549, 552, 585
LweI	GCATC	2 cut(s)	379, 790
MaeI	CTAG	2 cut(s)	813, 862
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	4 cut(s)	22, 124, 232, 785
MalI	GATC	2 cut(s)	513, 668
MboI	GATC	2 cut(s)	511, 666
MboII	GAAGA	6 cut(s)	283, 328, 418, 430, 433, 630
MhlI	GDGCHC	4 cut(s)	15, 335, 455, 783
MluCI	AATT	4 cut(s)	292, 424, 643, 705
MlyI	GAGTC	1 cut(s)	782
MroI	TCCGGA	1 cut(s)	535
MseI	TTAA	4 cut(s)	186, 291, 300, 849
MspI	CCGG	1 cut(s)	536
MspR9I	CCNGG	1 cut(s)	499
MvaI	CCWGG	1 cut(s)	499
MwoI	GCNNNNNNNGC	2 cut(s)	169, 809
NdeII	GATC	2 cut(s)	511, 666
NlaIII	CATG	3 cut(s)	547, 559, 622
NlaIV	GGNNCC	2 cut(s)	76, 223
NmeAIII	GCCGAG	1 cut(s)	314
NmuCI	GTSAC	3 cut(s)	22, 124, 785
NspI	RCATGY	1 cut(s)	559
NspV	TTCGAA	2 cut(s)	641, 729
PagI	TCATGA	1 cut(s)	543
PfeI	GAWTC	2 cut(s)	675, 857
PleI	GAGTC	1 cut(s)	782
PpsI	GAGTC	1 cut(s)	782
Ppu21I	YACGTR	1 cut(s)	157
Psp124BI	GAGCTC	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	497
PspGI	CCWGG	1 cut(s)	497
PspN4I	GGNNCC	2 cut(s)	76, 223
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SacI	GAGCTC	1 cut(s)	335
SaqAI	TTAA	4 cut(s)	186, 291, 300, 849
Sau3AI	GATC	2 cut(s)	511, 666
SchI	GAGTC	1 cut(s)	782
ScrFI	CCNGG	1 cut(s)	499
SduI	GDGCHC	4 cut(s)	15, 335, 455, 783
SfaNI	GCATC	2 cut(s)	379, 790
SfuI	TTCGAA	2 cut(s)	641, 729
Sse9I	AATT	4 cut(s)	292, 424, 643, 705
SsiI	CCGC	2 cut(s)	287, 443
SspMI	CTAG	2 cut(s)	813, 862
SstI	GAGCTC	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	497
TaaI	ACNGT	2 cut(s)	402, 854
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	2 cut(s)	641, 729
TasI	AATT	4 cut(s)	292, 424, 643, 705
TfiI	GAWTC	2 cut(s)	675, 857
Tru1I	TTAA	4 cut(s)	186, 291, 300, 849
Tru9I	TTAA	4 cut(s)	186, 291, 300, 849
TscAI	CASTG	1 cut(s)	859
TseFI	GTSAC	3 cut(s)	22, 124, 785
Tsp45I	GTSAC	3 cut(s)	22, 124, 785
TspGWI	ACGGA	1 cut(s)	449
TspRI	CASTG	1 cut(s)	859
XapI	RAATTY	2 cut(s)	643, 705
XceI	RCATGY	1 cut(s)	559
XmiI	GTMKAC	1 cut(s)	755
XspI	CTAG	2 cut(s)	813, 862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.