Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Reverse (-)

32047786 .. 32048333

Gene Structure 548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56732

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCCTTTCCCATCGTCTTCAACACTAGTTCACACTTCACACCATCGGCTCAATCACCAAACCCTTCCCTCTCCTCCGCTCAATCACCGTCGTCCCCTTCTCCACCTCCGCTGTCGATTTCCTCCCTTCCTACACCGTCACCCCTCCGATCCAAGACTGGCCCCACCACCTCCAAATACCACCCCGGATTTCACCATAATTGCCACACCTACCACGTAATCATCTGCCGCCTCCTCCGCTCCCGCGCTTTTCACCTCATCGACCCCCTCCTCTCCGACCTCCGCAGTTTGAATCTCCGATGCATCGCGGACCTCTTCATCTCCCTAATCTGCAACTACAGCGTCGTTTCACGCCCTAAACTCGCATTGAAGACATTTATCACCATTCCGAAATTCGGTGTCCAGCGATCTGTGAGGTCCTTGAATGCGTTGCTGAACGCTTTGGTTCAGAATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

152

Amino Acids

16.71

Weight (kDa)

10.45

Isoelectric Point (pI)

71.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	80, 240
AccII	CGCG	2 cut(s)	246, 308
AciI	CCGC	7 cut(s)	78, 110, 229, 238, 244, 283, 308
AclWI	GGATC	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	395
AgsI	TTSAA	4 cut(s)	22, 292, 370, 424
AhlI	ACTAGT	1 cut(s)	26
AlwI	GGATC	1 cut(s)	144
AoxI	GGCC	2 cut(s)	3, 160
ApoI	RAATTY	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	3 cut(s)	161, 310, 417
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	6 cut(s)	48, 78, 132, 185, 245, 373
AvaII	GGWCC	2 cut(s)	310, 417
BbsI	GAAGAC	2 cut(s)	10, 377
BccI	CCATC	2 cut(s)	20, 52
BcnI	CCSGG	1 cut(s)	186
BcuI	ACTAGT	1 cut(s)	26
BfaI	CTAG	2 cut(s)	27, 457
BfmI	CTRYAG	1 cut(s)	337
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	2 cut(s)	310, 417
BmgT120I	GGNCC	3 cut(s)	161, 310, 417
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	2 cut(s)	290, 312
BpiI	GAAGAC	2 cut(s)	10, 377
BpuMI	CCSGG	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse1I	ACTGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	3 cut(s)	64, 224, 260
Bsh1236I	CGCG	2 cut(s)	246, 308
BshFI	GGCC	2 cut(s)	5, 162
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	2 cut(s)	5, 162
Bsp143I	GATC	2 cut(s)	149, 407
BspACI	CCGC	7 cut(s)	78, 110, 229, 238, 244, 283, 308
BspANI	GGCC	2 cut(s)	5, 162
BspFNI	CGCG	2 cut(s)	246, 308
BspLI	GGNNCC	1 cut(s)	163
BspPI	GGATC	1 cut(s)	144
BsrBI	CCGCTC	2 cut(s)	80, 240
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	2 cut(s)	149, 407
Bst4CI	ACNGT	2 cut(s)	90, 138
Bst6I	CTCTTC	1 cut(s)	320
BstBAI	YACGTR	1 cut(s)	217
BstFNI	CGCG	2 cut(s)	246, 308
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	2 cut(s)	152, 410
BstMBI	GATC	2 cut(s)	149, 407
BstMWI	GCNNNNNNNGC	2 cut(s)	237, 339
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	337
BstUI	CGCG	2 cut(s)	246, 308
BstV2I	GAAGAC	2 cut(s)	10, 377
BsuRI	GGCC	2 cut(s)	5, 162
BtgZI	GCGATG	1 cut(s)	289
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	3 cut(s)	161, 310, 417
CseI	GACGC	1 cut(s)	331
CviJI	RGCY	3 cut(s)	5, 50, 162
CviKI_1	RGCY	3 cut(s)	5, 50, 162
DpnI	GATC	2 cut(s)	151, 409
DpnII	GATC	2 cut(s)	149, 407
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Eco47I	GGWCC	2 cut(s)	310, 417
EcoO109I	RGGNCCY	1 cut(s)	417
EcoT22I	ATGCAT	1 cut(s)	305
FaiI	YATR	1 cut(s)	198
FaqI	GGGAC	1 cut(s)	79
FauI	CCCGC	1 cut(s)	251
Fnu4HI	GCNGC	1 cut(s)	229
Fsp4HI	GCNGC	1 cut(s)	229
FspBI	CTAG	2 cut(s)	27, 457
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	1 cut(s)	229
HaeIII	GGCC	2 cut(s)	5, 162
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	1 cut(s)	331
HhaI	GCGC	1 cut(s)	248
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HinfI	GANTC	2 cut(s)	292, 451
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	6 cut(s)	48, 78, 132, 185, 245, 373
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	5 cut(s)	149, 277, 299, 390, 450
Hpy8I	GTNNAC	1 cut(s)	32
Hpy99I	CGWCG	2 cut(s)	94, 347
HpyAV	CCTTC	3 cut(s)	75, 108, 137
HpyCH4III	ACNGT	2 cut(s)	90, 138
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	2 cut(s)	303, 333
HpyF10VI	GCNNNNNNNGC	2 cut(s)	237, 339
HpySE526I	ACGT	1 cut(s)	216
HspAI	GCGC	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	149, 407
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	3 cut(s)	144, 199, 416
LweI	GCATC	2 cut(s)	290, 312
MaeI	CTAG	2 cut(s)	27, 457
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	138
MalI	GATC	2 cut(s)	151, 409
MbiI	CCGCTC	2 cut(s)	80, 240
MboI	GATC	2 cut(s)	149, 407
MboII	GAAGA	3 cut(s)	10, 307, 382
MluCI	AATT	2 cut(s)	199, 392
MmeI	TCCRAC	1 cut(s)	300
Mph1103I	ATGCAT	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	112
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	430
MvnI	CGCG	2 cut(s)	246, 308
MwoI	GCNNNNNNNGC	2 cut(s)	237, 339
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	2 cut(s)	149, 407
NlaIV	GGNNCC	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	138
NsiI	ATGCAT	1 cut(s)	305
PctI	GAATGC	1 cut(s)	430
PfeI	GAWTC	2 cut(s)	292, 451
PkrI	GCNGC	1 cut(s)	230
Ppu21I	YACGTR	1 cut(s)	217
PpuMI	RGGWCCY	1 cut(s)	417
Psp5II	RGGWCCY	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	3 cut(s)	161, 310, 417
PspPPI	RGGWCCY	1 cut(s)	417
SatI	GCNGC	1 cut(s)	229
Sau3AI	GATC	2 cut(s)	149, 407
Sau96I	GGNCC	3 cut(s)	161, 310, 417
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	8 cut(s)	109, 173, 212, 219, 258, 282, 315, 419
SfaNI	GCATC	2 cut(s)	290, 312
SfcI	CTRYAG	1 cut(s)	337
SinI	GGWCC	2 cut(s)	310, 417
SpeI	ACTAGT	1 cut(s)	26
Sse9I	AATT	2 cut(s)	199, 392
SsiI	CCGC	7 cut(s)	78, 110, 229, 238, 244, 283, 308
SspMI	CTAG	2 cut(s)	27, 457
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	2 cut(s)	90, 138
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	116, 261
TasI	AATT	2 cut(s)	199, 392
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	2 cut(s)	292, 451
TseFI	GTSAC	1 cut(s)	138
Tsp45I	GTSAC	1 cut(s)	138
TspDTI	ATGAA	1 cut(s)	307
VpaK11BI	GGWCC	2 cut(s)	310, 417
XapI	RAATTY	1 cut(s)	392
XspI	CTAG	2 cut(s)	27, 457
Zsp2I	ATGCAT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.