Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001836.1

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Reverse (-)

86539 .. 86988

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001836.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgcctgccatgggatttgtgcccaatgtggtgacttttactaccattttgggttccaagagagtgtctggtgagtttttggacagagggtggtttcctgatgtgactacttatactatattgatggatgggtatgtcgagcaggggaagctggttgaggctattaaggtcatggatgagatggaggataatgggattggcgccaatgaggttacttatggagttatgattgaaggttattgcaaggtacagaagtcgggcgaagcggttaatttgcttgatgatatggtgcagaagaggtatataccgagctcggcgctctgttgtcaggtgattgatgttttgtgttgccaagggaaggtggaggatgcttgtgaactgttatttgggactggaaatacgacagaaaagcactggggagagagagagagagagagagagagaccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

149

Amino Acids

16.64

Weight (kDa)

4.62

Isoelectric Point (pI)

21.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AciI	CCGC	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	11, 358
AgsI	TTSAA	1 cut(s)	233
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AluBI	AGCT	2 cut(s)	151, 312
AluI	AGCT	2 cut(s)	151, 312
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	436
AspLEI	GCGC	2 cut(s)	203, 319
AsuHPI	GGTGA	3 cut(s)	43, 83, 343
BaeGI	GKGCMC	1 cut(s)	24
BaeI	ACNNNNGTAYC	2 cut(s)	239, 272
BanI	GGYRCC	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	314
BccI	CCATC	3 cut(s)	118, 122, 175
BcoDI	GTCTC	1 cut(s)	436
BfoI	RGCGCY	2 cut(s)	204, 320
BmiI	GGNNCC	2 cut(s)	55, 202
BmrI	ACTGGG	1 cut(s)	424
BmsI	GCATC	1 cut(s)	358
BmuI	ACTGGG	1 cut(s)	424
BsaHI	GRCGYC	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	436
BsaJI	CCNNGG	2 cut(s)	9, 352
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 358
Bse1I	ACTGG	2 cut(s)	397, 419
BseDI	CCNNGG	2 cut(s)	9, 352
BseGI	GGATG	3 cut(s)	133, 181, 373
BseLI	CCNNNNNNNGG	2 cut(s)	11, 358
BseNI	ACTGG	2 cut(s)	397, 419
BseSI	GKGCMC	1 cut(s)	24
BsgI	GTGCAG	1 cut(s)	311
BshNI	GGYRCC	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	2 cut(s)	11, 358
BsmAI	GTCTC	1 cut(s)	436
BsmFI	GGGAC	1 cut(s)	403
Bso31I	GGTCTC	1 cut(s)	436
Bsp1286I	GDGCHC	2 cut(s)	24, 314
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	1 cut(s)	266
BspLI	GGNNCC	2 cut(s)	55, 202
BspT107I	GGYRCC	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	436
BsrI	ACTGG	2 cut(s)	397, 419
BssECI	CCNNGG	2 cut(s)	9, 352
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	2 cut(s)	9, 352
Bst4CI	ACNGT	1 cut(s)	381
Bst6I	CTCTTC	1 cut(s)	290
BstACI	GRCGYC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	6
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	3 cut(s)	133, 181, 373
BstH2I	RGCGCY	2 cut(s)	204, 320
BstHHI	GCGC	2 cut(s)	203, 319
BstMAI	GTCTC	1 cut(s)	436
BstMWI	GCNNNNNNNGC	1 cut(s)	148
BstSLI	GKGCMC	1 cut(s)	24
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	3 cut(s)	133, 181, 373
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	2 cut(s)	203, 319
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	2 cut(s)	10, 172
CviJI	RGCY	3 cut(s)	151, 161, 312
CviKI_1	RGCY	3 cut(s)	151, 161, 312
CviQI	GTAC	1 cut(s)	248
DinI	GGCGCC	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Ecl136II	GAGCTC	1 cut(s)	312
Eco130I	CCWWGG	2 cut(s)	9, 352
Eco24I	GRGCYC	1 cut(s)	314
Eco31I	GGTCTC	1 cut(s)	436
Eco53kI	GAGCTC	1 cut(s)	312
EcoICRI	GAGCTC	1 cut(s)	312
EcoT14I	CCWWGG	2 cut(s)	9, 352
EcoT38I	GRGCYC	1 cut(s)	314
EgeI	GGCGCC	1 cut(s)	202
EheI	GGCGCC	1 cut(s)	202
ErhI	CCWWGG	2 cut(s)	9, 352
FaeI	CATG	2 cut(s)	13, 175
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	2 cut(s)	9, 171
FokI	GGATG	3 cut(s)	140, 188, 380
FriOI	GRGCYC	1 cut(s)	314
GlaI	GCGC	2 cut(s)	202, 318
HaeII	RGCGCY	2 cut(s)	204, 320
HhaI	GCGC	2 cut(s)	203, 319
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	2 cut(s)	13, 175
Hin6I	GCGC	2 cut(s)	201, 317
HinP1I	GCGC	2 cut(s)	201, 317
HphI	GGTGA	3 cut(s)	43, 83, 343
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	1 cut(s)	377
HpyAV	CCTTC	2 cut(s)	227, 352
HpyCH4III	ACNGT	1 cut(s)	381
HpyCH4V	TGCA	2 cut(s)	243, 292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	148
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	13, 175
HspAI	GCGC	2 cut(s)	201, 317
KasI	GGCGCC	1 cut(s)	200
LpnPI	CCDG	8 cut(s)	18, 54, 111, 128, 137, 314, 378, 400
LweI	GCATC	1 cut(s)	358
MaeIII	GTNAC	3 cut(s)	31, 103, 211
MboII	GAAGA	1 cut(s)	307
MhlI	GDGCHC	2 cut(s)	24, 314
MluCI	AATT	1 cut(s)	271
Mly113I	GGCGCC	1 cut(s)	201
MnlI	CCTC	6 cut(s)	80, 151, 178, 202, 291, 358
MseI	TTAA	2 cut(s)	165, 270
MwoI	GCNNNNNNNGC	1 cut(s)	148
NarI	GGCGCC	1 cut(s)	201
NcoI	CCATGG	1 cut(s)	9
NlaIII	CATG	2 cut(s)	13, 175
NlaIV	GGNNCC	2 cut(s)	55, 202
NmeAIII	GCCGAG	1 cut(s)	293
NmuCI	GTSAC	2 cut(s)	31, 103
PluTI	GGCGCC	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	55, 202
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
SacI	GAGCTC	1 cut(s)	314
SaqAI	TTAA	2 cut(s)	165, 270
SduI	GDGCHC	2 cut(s)	24, 314
SetI	ASST	9 cut(s)	153, 171, 213, 238, 249, 302, 314, 333, 363
SfaNI	GCATC	1 cut(s)	358
SfoI	GGCGCC	1 cut(s)	202
Sse9I	AATT	1 cut(s)	271
SsiI	CCGC	1 cut(s)	266
SspDI	GGCGCC	1 cut(s)	200
SstI	GAGCTC	1 cut(s)	314
StyI	CCWWGG	2 cut(s)	9, 352
TaaI	ACNGT	1 cut(s)	381
TaqI	TCGA	1 cut(s)	138
TasI	AATT	1 cut(s)	271
Tru1I	TTAA	2 cut(s)	165, 270
Tru9I	TTAA	2 cut(s)	165, 270
TscAI	CASTG	1 cut(s)	419
TseFI	GTSAC	2 cut(s)	31, 103
Tsp45I	GTSAC	2 cut(s)	31, 103
TspRI	CASTG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.